RNA–Protein interactions for RNA: ENST00000478451.1

GPNMB-210, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 862 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-210ENST00000478451 AEBP2Q6ZN18 517 aaPredicted RBP24.28■■□□□ 1.48
GPNMB-210ENST00000478451 CHIC1Q5VXU3 224 aa22.79■■□□□ 1.24
GPNMB-210ENST00000478451 SENP3Q9H4L4 574 aaPredicted RBP20.96■□□□□ 0.95
GPNMB-210ENST00000478451 PHF23Q9BUL5 403 aaPredicted RBP20.5■□□□□ 0.87
GPNMB-210ENST00000478451 POTEDQ86YR6 584 aa19.56■□□□□ 0.72
GPNMB-210ENST00000478451 FOXD1Q16676 465 aa19.55■□□□□ 0.72
GPNMB-210ENST00000478451 MSH5O43196 834 aa18.71■□□□□ 0.59
GPNMB-210ENST00000478451 PIAS4Q8N2W9 510 aaPredicted RBP18.07■□□□□ 0.48
GPNMB-210ENST00000478451 PPP6R1Q9UPN7 881 aa17.6■□□□□ 0.41
GPNMB-210ENST00000478451 PLPPR3Q6T4P5 718 aa17.52■□□□□ 0.4
GPNMB-210ENST00000478451 ADRA2BP18089 450 aa17.49■□□□□ 0.39
GPNMB-210ENST00000478451 DMRT2Q9Y5R5 561 aa16.48■□□□□ 0.23
GPNMB-210ENST00000478451 CACNB1Q02641 598 aaPredicted RBP16.47■□□□□ 0.23
GPNMB-210ENST00000478451 MAPK8IP2Q13387 824 aaPredicted RBP16.29■□□□□ 0.2
GPNMB-210ENST00000478451 SCAF1Q9H7N4 1312 aaKnown RBP16.17■□□□□ 0.18
GPNMB-210ENST00000478451 RNF39Q9H2S5 420 aa15.85■□□□□ 0.13
GPNMB-210ENST00000478451 DCAF8L1A6NGE4 600 aa15.72■□□□□ 0.11
GPNMB-210ENST00000478451 C1QBPQ07021 282 aaKnown RBP15.62■□□□□ 0.09
GPNMB-210ENST00000478451 HOXD11P31277 338 aaPredicted RBP15.57■□□□□ 0.08
GPNMB-210ENST00000478451 DNAJC5BQ9UF47 199 aa15.33■□□□□ 0.04
GPNMB-210ENST00000478451 RNF216Q9NWF9 866 aaPredicted RBP15.24■□□□□ 0.03
GPNMB-210ENST00000478451 PPP4R3CPQ6ZMV5 832 aa15.19■□□□□ 0.02
GPNMB-210ENST00000478451 POTEHQ6S545 545 aa15.18■□□□□ 0.02
GPNMB-210ENST00000478451 CNKSR2Q8WXI2 1034 aa15.15■□□□□ 0.02
GPNMB-210ENST00000478451 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.77□□□□□ -0.05
GPNMB-210ENST00000478451 DSG3P32926 999 aa14.55□□□□□ -0.08
GPNMB-210ENST00000478451 NCBP3Q53F19 620 aaKnown RBP14.44□□□□□ -0.1
GPNMB-210ENST00000478451 CAPN15O75808 1086 aa14.39□□□□□ -0.11
GPNMB-210ENST00000478451 U3KPZ7 1027 aaPredicted RBP14.37□□□□□ -0.11
GPNMB-210ENST00000478451 SPINK5Q9NQ38 1064 aaPredicted RBP14.35□□□□□ -0.11
GPNMB-210ENST00000478451 NPM3O75607 178 aaKnown RBP14.15□□□□□ -0.14
GPNMB-210ENST00000478451 KCNA4P22459 653 aa14.07□□□□□ -0.16
GPNMB-210ENST00000478451 APLP2Q06481 763 aa14.02□□□□□ -0.17
GPNMB-210ENST00000478451 ZNF219Q9P2Y4 722 aaPredicted RBP14.01□□□□□ -0.17
GPNMB-210ENST00000478451 RBM42Q9BTD8 480 aaKnown RBP13.98□□□□□ -0.17
GPNMB-210ENST00000478451 TRHP20396 242 aaPredicted RBP13.94□□□□□ -0.18
GPNMB-210ENST00000478451 ABCB7O75027 752 aa13.93□□□□□ -0.18
GPNMB-210ENST00000478451 CHRDL2Q6WN34 429 aa13.92□□□□□ -0.18
GPNMB-210ENST00000478451 SP7Q8TDD2 431 aaPredicted RBP13.86□□□□□ -0.19
GPNMB-210ENST00000478451 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.79□□□□□ -0.2
GPNMB-210ENST00000478451 HNRNPUL2Q1KMD3 747 aaKnown RBP13.79□□□□□ -0.2
GPNMB-210ENST00000478451 SLC4A2P04920 1241 aa13.71□□□□□ -0.21
GPNMB-210ENST00000478451 SAMD1Q6SPF0 538 aaPredicted RBP13.64□□□□□ -0.23
GPNMB-210ENST00000478451 AKT1S1Q96B36 256 aa13.46□□□□□ -0.25
GPNMB-210ENST00000478451 POLA2Q14181 598 aa13.41□□□□□ -0.26
GPNMB-210ENST00000478451 PIP4P2Q8N4L2 257 aa13.4□□□□□ -0.26
GPNMB-210ENST00000478451 SLC4A1APQ9BWU0 796 aaKnown RBP13.38□□□□□ -0.27
GPNMB-210ENST00000478451 HAX1O00165 279 aa13.36□□□□□ -0.27
GPNMB-210ENST00000478451 REM2Q8IYK8 340 aaPredicted RBP13.28□□□□□ -0.28
GPNMB-210ENST00000478451 FXR2P51116 673 aaKnown RBP eCLIP13.23□□□□□ -0.29
GPNMB-210ENST00000478451 ZBTB12Q9Y330 459 aaPredicted RBP13.21□□□□□ -0.29
GPNMB-210ENST00000478451 MYCNP04198 464 aaPredicted RBP13.16□□□□□ -0.3
GPNMB-210ENST00000478451 PITPNM1O00562 1244 aa13.13□□□□□ -0.31
GPNMB-210ENST00000478451 EVX2Q03828 476 aa13.08□□□□□ -0.32
GPNMB-210ENST00000478451 FOXD4L1Q9NU39 408 aa13.02□□□□□ -0.33
GPNMB-210ENST00000478451 OSCARQ8IYS5 282 aa13□□□□□ -0.33
GPNMB-210ENST00000478451 LHX8Q68G74 356 aa12.97□□□□□ -0.33
GPNMB-210ENST00000478451 ZBTB22O15209 634 aa12.95□□□□□ -0.34
GPNMB-210ENST00000478451 C19orf67A6NJJ6 358 aa12.83□□□□□ -0.36
GPNMB-210ENST00000478451 GABBR2O75899 941 aa12.81□□□□□ -0.36
GPNMB-210ENST00000478451 EHMT2Q96KQ7 1210 aa12.81□□□□□ -0.36
GPNMB-210ENST00000478451 ATF5Q9Y2D1 282 aaPredicted RBP12.8□□□□□ -0.36
GPNMB-210ENST00000478451 PRKAR2AP13861 404 aaKnown RBP12.78□□□□□ -0.36
GPNMB-210ENST00000478451 PLSCR2Q9NRY7 297 aa12.75□□□□□ -0.37
GPNMB-210ENST00000478451 CSRNP3Q8WYN3 585 aa12.72□□□□□ -0.37
GPNMB-210ENST00000478451 SPDYE2BA6NHP3 402 aa12.69□□□□□ -0.38
GPNMB-210ENST00000478451 SPDYE6P0CI01 402 aa12.69□□□□□ -0.38
GPNMB-210ENST00000478451 SPDYE2Q495Y8 402 aa12.69□□□□□ -0.38
GPNMB-210ENST00000478451 SPDYE1Q8NFV5 336 aaPredicted RBP12.66□□□□□ -0.38
GPNMB-210ENST00000478451 CLEC11AQ9Y240 323 aa12.58□□□□□ -0.4
GPNMB-210ENST00000478451 ATXN8OSP0DMR3 200 aa12.57□□□□□ -0.4
GPNMB-210ENST00000478451 CLCN6P51797 869 aa12.51□□□□□ -0.41
GPNMB-210ENST00000478451 POTEIP0CG38 1075 aa12.5□□□□□ -0.41
GPNMB-210ENST00000478451 FBLN2P98095 1184 aa12.47□□□□□ -0.41
GPNMB-210ENST00000478451 SSUH2Q9Y2M2 353 aa12.41□□□□□ -0.42
GPNMB-210ENST00000478451 CHADLQ6NUI6 762 aa12.39□□□□□ -0.43
GPNMB-210ENST00000478451 ZNF692Q9BU19 519 aaPredicted RBP12.35□□□□□ -0.43
GPNMB-210ENST00000478451 CD44P16070 742 aaKnown RBP12.33□□□□□ -0.44
GPNMB-210ENST00000478451 PRR29P0C7W0 189 aa12.31□□□□□ -0.44
GPNMB-210ENST00000478451 DCBLD2Q96PD2 775 aa12.3□□□□□ -0.44
GPNMB-210ENST00000478451 POTEMA6NI47 508 aa12.24□□□□□ -0.45
GPNMB-210ENST00000478451 PCDH10Q9P2E7 1040 aa12.24□□□□□ -0.45
GPNMB-210ENST00000478451 OTUD5Q96G74 571 aa12.22□□□□□ -0.45
GPNMB-210ENST00000478451 FARP1Q9Y4F1 1045 aaPredicted RBP12.22□□□□□ -0.45
GPNMB-210ENST00000478451 MKRN4PQ13434 485 aaPredicted RBP12.2□□□□□ -0.46
GPNMB-210ENST00000478451 POTEGQ6S5H5 508 aa12.18□□□□□ -0.46
GPNMB-210ENST00000478451 ZNF579Q8NAF0 562 aaKnown RBP12.16□□□□□ -0.46
GPNMB-210ENST00000478451 PABPN1Q86U42 306 aaKnown RBP eCLIP12.12□□□□□ -0.47
GPNMB-210ENST00000478451 POTEB2H3BUK9 544 aa12.06□□□□□ -0.48
GPNMB-210ENST00000478451 ZRANB1Q9UGI0 708 aa12.02□□□□□ -0.49
GPNMB-210ENST00000478451 GALR2O43603 387 aaPredicted RBP11.98□□□□□ -0.49
GPNMB-210ENST00000478451 MAMSTRQ6ZN01 415 aa11.86□□□□□ -0.51
GPNMB-210ENST00000478451 PAK3O75914 559 aaPredicted RBP11.81□□□□□ -0.52
GPNMB-210ENST00000478451 LCE2DQ5TA82 110 aaPredicted RBP11.81□□□□□ -0.52
GPNMB-210ENST00000478451 PELP1Q8IZL8 1130 aaKnown RBP11.81□□□□□ -0.52
GPNMB-210ENST00000478451 CREBZFQ9NS37 354 aa11.8□□□□□ -0.52
GPNMB-210ENST00000478451 C7P10643 843 aa11.78□□□□□ -0.52
GPNMB-210ENST00000478451 METRNQ9UJH8 293 aa11.78□□□□□ -0.52
GPNMB-210ENST00000478451 SLC39A7Q92504 469 aa11.77□□□□□ -0.53
GPNMB-210ENST00000478451 ASTLQ6HA08 431 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms