RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 CHMP4AQ9BY43 222 aa16.33■□□□□ 0.21
HLA-DMA-208ENST00000477541 TSPYL4Q9UJ04 414 aa16.33■□□□□ 0.21
HLA-DMA-208ENST00000477541 ANO2Q9NQ90 1003 aa16.33■□□□□ 0.2
HLA-DMA-208ENST00000477541 NSFL1CQ9UNZ2 370 aaKnown RBP16.33■□□□□ 0.2
HLA-DMA-208ENST00000477541 SBNO1A3KN83 1393 aa16.33■□□□□ 0.2
HLA-DMA-208ENST00000477541 RPAP1Q9BWH6 1393 aaPredicted RBP16.33■□□□□ 0.2
HLA-DMA-208ENST00000477541 PTPRUQ92729 1446 aa16.32■□□□□ 0.2
HLA-DMA-208ENST00000477541 APBB1O00213 710 aa16.32■□□□□ 0.2
HLA-DMA-208ENST00000477541 KRT24Q2M2I5 525 aa16.32■□□□□ 0.2
HLA-DMA-208ENST00000477541 MYRIPQ8NFW9 859 aa16.32■□□□□ 0.2
HLA-DMA-208ENST00000477541 PIBF1Q8WXW3 757 aa16.32■□□□□ 0.2
HLA-DMA-208ENST00000477541 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.32■□□□□ 0.2
HLA-DMA-208ENST00000477541 FLT4P35916 1363 aa16.32■□□□□ 0.2
HLA-DMA-208ENST00000477541 GTF2F1P35269 517 aaKnown RBP eCLIP16.31■□□□□ 0.2
HLA-DMA-208ENST00000477541 USP54Q70EL1 1684 aa16.31■□□□□ 0.2
HLA-DMA-208ENST00000477541 PRR36Q9H6K5 1346 aa16.31■□□□□ 0.2
HLA-DMA-208ENST00000477541 UBE2HP62256 183 aa16.31■□□□□ 0.2
HLA-DMA-208ENST00000477541 SMAP1Q8IYB5 467 aaPredicted RBP16.31■□□□□ 0.2
HLA-DMA-208ENST00000477541 CHD2O14647 1828 aaKnown RBP16.3■□□□□ 0.2
HLA-DMA-208ENST00000477541 RAD50Q92878 1312 aa16.3■□□□□ 0.2
HLA-DMA-208ENST00000477541 SLC4A10Q6U841 1118 aa16.3■□□□□ 0.2
HLA-DMA-208ENST00000477541 FAM13BQ9NYF5 915 aa16.3■□□□□ 0.2
HLA-DMA-208ENST00000477541 PALD1Q9ULE6 856 aa16.3■□□□□ 0.2
HLA-DMA-208ENST00000477541 EXOC6BQ9Y2D4 811 aa16.3■□□□□ 0.2
HLA-DMA-208ENST00000477541 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.3■□□□□ 0.2
HLA-DMA-208ENST00000477541 TRIM6-TRIM34B2RNG4 842 aa16.29■□□□□ 0.2
HLA-DMA-208ENST00000477541 FLIIQ13045 1269 aa16.29■□□□□ 0.2
HLA-DMA-208ENST00000477541 USP48Q86UV5 1035 aa16.29■□□□□ 0.2
HLA-DMA-208ENST00000477541 SSH3Q8TE77 659 aa16.29■□□□□ 0.2
HLA-DMA-208ENST00000477541 IGSF1Q8N6C5 1336 aa16.29■□□□□ 0.2
HLA-DMA-208ENST00000477541 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.29■□□□□ 0.2
HLA-DMA-208ENST00000477541 TXNDC2Q86VQ3 553 aa16.28■□□□□ 0.2
HLA-DMA-208ENST00000477541 SPTLC3Q9NUV7 552 aa16.28■□□□□ 0.2
HLA-DMA-208ENST00000477541 TCHHQ07283 1943 aa16.28■□□□□ 0.2
HLA-DMA-208ENST00000477541 MAP3K5Q99683 1374 aa16.28■□□□□ 0.2
HLA-DMA-208ENST00000477541 ZSCAN22P10073 491 aaPredicted RBP16.28■□□□□ 0.2
HLA-DMA-208ENST00000477541 HSP90AB4PQ58FF6 505 aa16.28■□□□□ 0.2
HLA-DMA-208ENST00000477541 G2E3Q7L622 706 aa16.28■□□□□ 0.2
HLA-DMA-208ENST00000477541 RILPL2Q969X0 211 aa16.28■□□□□ 0.2
HLA-DMA-208ENST00000477541 USP42Q9H9J4 1324 aaKnown RBP16.27■□□□□ 0.2
HLA-DMA-208ENST00000477541 DIP2AQ14689 1571 aa16.27■□□□□ 0.19
HLA-DMA-208ENST00000477541 RNF214Q8ND24 703 aa16.27■□□□□ 0.19
HLA-DMA-208ENST00000477541 ACEP12821 1306 aa16.27■□□□□ 0.19
HLA-DMA-208ENST00000477541 MAP3K19Q56UN5 1328 aa16.27■□□□□ 0.19
HLA-DMA-208ENST00000477541 UBR1Q8IWV7 1749 aa16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 SGSM2O43147 1006 aa16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 RBM10P98175 930 aaKnown RBP16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 MTHFSDQ2M296 383 aaKnown RBP16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 UPF1Q92900 1129 aaKnown RBP eCLIP16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 ZSCAN31Q96LW9 406 aaPredicted RBP16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 TTC14Q96N46 770 aa16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 USP25Q9UHP3 1055 aa16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 LIMCH1Q9UPQ0 1083 aa16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 XIRP1Q702N8 1843 aaKnown RBP16.26■□□□□ 0.19
HLA-DMA-208ENST00000477541 F6X3S4 739 aa16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 FKBP5Q13451 457 aaPredicted RBP16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 POLA2Q14181 598 aa16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 HSP90AB2PQ58FF8 381 aa16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 CNTROBQ8N137 903 aa16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 SH2B1Q9NRF2 756 aaPredicted RBP16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 PNMA6EA0A0J9YXQ4 647 aa16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 UBTFL1P0CB47 393 aaPredicted RBP16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 NOLC1Q14978 699 aaKnown RBP eCLIP16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 CCDC94Q9BW85 323 aaPredicted RBP16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 TM6SF1Q9BZW5 370 aa16.25■□□□□ 0.19
HLA-DMA-208ENST00000477541 TTC41PQ6P2S7 1318 aa16.24■□□□□ 0.19
HLA-DMA-208ENST00000477541 STX6O43752 255 aa16.24■□□□□ 0.19
HLA-DMA-208ENST00000477541 RUFY2Q8WXA3 655 aa16.24■□□□□ 0.19
HLA-DMA-208ENST00000477541 KIF1BPQ96EK5 621 aa16.24■□□□□ 0.19
HLA-DMA-208ENST00000477541 ROBO2Q9HCK4 1378 aa16.24■□□□□ 0.19
HLA-DMA-208ENST00000477541 GOLGA6L6A8MZA4 724 aa16.23■□□□□ 0.19
HLA-DMA-208ENST00000477541 KDM4AO75164 1064 aa16.23■□□□□ 0.19
HLA-DMA-208ENST00000477541 F13A1P00488 732 aa16.23■□□□□ 0.19
HLA-DMA-208ENST00000477541 HOXB7P09629 217 aa16.23■□□□□ 0.19
HLA-DMA-208ENST00000477541 FOXD4L5Q5VV16 416 aaPredicted RBP16.23■□□□□ 0.19
HLA-DMA-208ENST00000477541 FOXD4L4Q8WXT5 416 aaPredicted RBP16.23■□□□□ 0.19
HLA-DMA-208ENST00000477541 TMEM2Q9UHN6 1383 aa16.23■□□□□ 0.19
HLA-DMA-208ENST00000477541 ADAMTS13Q76LX8 1427 aa16.23■□□□□ 0.19
HLA-DMA-208ENST00000477541 GADD45BO75293 160 aaPredicted RBP16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 ADCY5O95622 1261 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 SMC3Q9UQE7 1217 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 SNX14Q9Y5W7 946 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 LRRFIP2Q9Y608 721 aaKnown RBP16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 CCDC171Q6TFL3 1326 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 PLEKHG1Q9ULL1 1385 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 GNAT3A8MTJ3 354 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 DNTTIP2Q5QJE6 756 aaKnown RBP16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 PI4K2BQ8TCG2 481 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 KCNB2Q92953 911 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 FUCA2Q9BTY2 467 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 UPF3BQ9BZI7 483 aaKnown RBP16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 LSG1Q9H089 658 aaKnown RBP16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 USP44Q9H0E7 712 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 DIAPH3Q9NSV4 1193 aa16.22■□□□□ 0.19
HLA-DMA-208ENST00000477541 VPS53Q5VIR6 699 aa16.21■□□□□ 0.19
HLA-DMA-208ENST00000477541 HDAC5Q9UQL6 1122 aa16.21■□□□□ 0.19
HLA-DMA-208ENST00000477541 SYT1P21579 422 aa16.2■□□□□ 0.18
HLA-DMA-208ENST00000477541 UTP14CQ5TAP6 766 aaKnown RBP16.2■□□□□ 0.18
HLA-DMA-208ENST00000477541 RHPN1Q8TCX5 695 aa16.2■□□□□ 0.18
HLA-DMA-208ENST00000477541 CHAMP1Q96JM3 812 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms