RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	EFHC2	Q5JST6	749 aa		6.96	□□□□□ -1.3
PTCD3-212	ENST00000477520	GNAS	Q5JWF2	1037 aa		6.96	□□□□□ -1.3
PTCD3-212	ENST00000477520	CCDC85A	Q96PX6	553 aa	Predicted RBP	6.96	□□□□□ -1.3
PTCD3-212	ENST00000477520	ESF1	Q9H501	851 aa	Known RBP	6.96	□□□□□ -1.3
PTCD3-212	ENST00000477520	KLF15	Q9UIH9	416 aa		6.96	□□□□□ -1.3
PTCD3-212	ENST00000477520	ARAF	P10398	606 aa		6.95	□□□□□ -1.3
PTCD3-212	ENST00000477520	ZMYM1	Q5SVZ6	1142 aa		6.95	□□□□□ -1.3
PTCD3-212	ENST00000477520	TMEM214	Q6NUQ4	689 aa	Known RBP	6.95	□□□□□ -1.3
PTCD3-212	ENST00000477520	MCCD1	P59942	119 aa	Predicted RBP	6.94	□□□□□ -1.3
PTCD3-212	ENST00000477520	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	6.94	□□□□□ -1.3
PTCD3-212	ENST00000477520	TMEM259	Q4ZIN3	620 aa		6.94	□□□□□ -1.3
PTCD3-212	ENST00000477520	FOXD4L3	Q6VB84	417 aa	Predicted RBP	6.94	□□□□□ -1.3
PTCD3-212	ENST00000477520	CRISPLD1	Q9H336	500 aa		6.94	□□□□□ -1.3
PTCD3-212	ENST00000477520	DNAAF2	Q9NVR5	837 aa	Known RBP	6.94	□□□□□ -1.3
PTCD3-212	ENST00000477520	NOP53	Q9NZM5	478 aa	Known RBP	6.94	□□□□□ -1.3
PTCD3-212	ENST00000477520	PIK3R2	O00459	728 aa		6.93	□□□□□ -1.3
PTCD3-212	ENST00000477520	CHSY3	Q70JA7	882 aa		6.93	□□□□□ -1.3
PTCD3-212	ENST00000477520	TRIM11	Q96F44	468 aa		6.93	□□□□□ -1.3
PTCD3-212	ENST00000477520	ZCCHC2	Q9C0B9	1178 aa	Known RBP	6.93	□□□□□ -1.3
PTCD3-212	ENST00000477520	FCHSD1	Q86WN1	690 aa		6.92	□□□□□ -1.3
PTCD3-212	ENST00000477520	MYC	P01106	439 aa	Predicted RBP	6.91	□□□□□ -1.3
PTCD3-212	ENST00000477520	GTF2E1	P29083	439 aa	Predicted RBP	6.91	□□□□□ -1.3
PTCD3-212	ENST00000477520	RSPO4	Q2I0M5	234 aa	Predicted RBP	6.91	□□□□□ -1.3
PTCD3-212	ENST00000477520	TSGA10IP	Q3SY00	556 aa		6.91	□□□□□ -1.3
PTCD3-212	ENST00000477520	RHBDD1	Q8TEB9	315 aa		6.91	□□□□□ -1.3
PTCD3-212	ENST00000477520	ETNK1	Q9HBU6	452 aa		6.91	□□□□□ -1.3
PTCD3-212	ENST00000477520	ATP4A	P20648	1035 aa		6.9	□□□□□ -1.3
PTCD3-212	ENST00000477520	GATA4	P43694	442 aa		6.9	□□□□□ -1.3
PTCD3-212	ENST00000477520	PLA2G4A	P47712	749 aa		6.9	□□□□□ -1.3
PTCD3-212	ENST00000477520	DIEXF	Q68CQ4	756 aa	Known RBP	6.9	□□□□□ -1.3
PTCD3-212	ENST00000477520	KRTAP4-12	Q9BQ66	201 aa		6.9	□□□□□ -1.3
PTCD3-212	ENST00000477520	PCDHGC4	Q9Y5F7	938 aa		6.9	□□□□□ -1.3
PTCD3-212	ENST00000477520	CD33	P20138	364 aa		6.89	□□□□□ -1.31
PTCD3-212	ENST00000477520	TLR1	Q15399	786 aa		6.89	□□□□□ -1.31
PTCD3-212	ENST00000477520	PLVAP	Q9BX97	442 aa		6.89	□□□□□ -1.31
PTCD3-212	ENST00000477520	CEP126	Q9P2H0	1117 aa		6.89	□□□□□ -1.31
PTCD3-212	ENST00000477520	CCDC88B	A6NC98	1476 aa		6.89	□□□□□ -1.31
PTCD3-212	ENST00000477520	DCDC2B	A2VCK2	349 aa		6.88	□□□□□ -1.31
PTCD3-212	ENST00000477520	ADH6	P28332	368 aa		6.88	□□□□□ -1.31
PTCD3-212	ENST00000477520	ESCO1	Q5FWF5	840 aa		6.88	□□□□□ -1.31
PTCD3-212	ENST00000477520	NKAPL	Q5M9Q1	402 aa		6.88	□□□□□ -1.31
PTCD3-212	ENST00000477520	FIGNL1	Q6PIW4	674 aa		6.88	□□□□□ -1.31
PTCD3-212	ENST00000477520	TBC1D9	Q6ZT07	1266 aa		6.88	□□□□□ -1.31
PTCD3-212	ENST00000477520	FAM9A	Q8IZU1	332 aa	Predicted RBP	6.88	□□□□□ -1.31
PTCD3-212	ENST00000477520	PCMTD1	Q96MG8	357 aa	Predicted RBP	6.88	□□□□□ -1.31
PTCD3-212	ENST00000477520	ZNF330	Q9Y3S2	320 aa	Predicted RBP	6.88	□□□□□ -1.31
PTCD3-212	ENST00000477520	ATXN7	O15265	892 aa	Predicted RBP	6.87	□□□□□ -1.31
PTCD3-212	ENST00000477520	MAPT	P10636	758 aa	Known RBP	6.87	□□□□□ -1.31
PTCD3-212	ENST00000477520	TNP2	Q05952	138 aa		6.87	□□□□□ -1.31
PTCD3-212	ENST00000477520	LCE3B	Q5TA77	95 aa		6.87	□□□□□ -1.31
PTCD3-212	ENST00000477520	ZNF592	Q92610	1267 aa		6.87	□□□□□ -1.31
PTCD3-212	ENST00000477520	GOPC	Q9HD26	462 aa		6.87	□□□□□ -1.31
PTCD3-212	ENST00000477520	CADPS	Q9ULU8	1353 aa		6.86	□□□□□ -1.31
PTCD3-212	ENST00000477520	SCO2	A0A1W2PP80	73 aa		6.86	□□□□□ -1.31
PTCD3-212	ENST00000477520	SPATA31C1	P0DKV0	1188 aa		6.86	□□□□□ -1.31
PTCD3-212	ENST00000477520	PCBP4	P57723	403 aa	Known RBP	6.86	□□□□□ -1.31
PTCD3-212	ENST00000477520	NLRP8	Q86W28	1048 aa		6.86	□□□□□ -1.31
PTCD3-212	ENST00000477520	TPSG1	Q9NRR2	321 aa		6.86	□□□□□ -1.31
PTCD3-212	ENST00000477520	LAMC3	Q9Y6N6	1575 aa		6.86	□□□□□ -1.31
PTCD3-212	ENST00000477520		A0A1W2PNR3	127 aa		6.85	□□□□□ -1.31
PTCD3-212	ENST00000477520	FAM182B	Q5T319	152 aa		6.85	□□□□□ -1.31
PTCD3-212	ENST00000477520	MTMR14	Q8NCE2	650 aa		6.85	□□□□□ -1.31
PTCD3-212	ENST00000477520	KHNYN	O15037	678 aa	Known RBP	6.84	□□□□□ -1.31
PTCD3-212	ENST00000477520	SCNN1D	P51172	638 aa		6.84	□□□□□ -1.31
PTCD3-212	ENST00000477520	PHTF2	Q8N3S3	785 aa		6.84	□□□□□ -1.31
PTCD3-212	ENST00000477520	AIDA	Q96BJ3	306 aa		6.84	□□□□□ -1.31
PTCD3-212	ENST00000477520	AVEN	Q9NQS1	362 aa	Predicted RBP	6.84	□□□□□ -1.31
PTCD3-212	ENST00000477520	STRN4	Q9NRL3	753 aa		6.84	□□□□□ -1.31
PTCD3-212	ENST00000477520	CFTR	P13569	1480 aa		6.84	□□□□□ -1.31
PTCD3-212	ENST00000477520	DYRK3	O43781	588 aa		6.83	□□□□□ -1.32
PTCD3-212	ENST00000477520	ZNF468	Q5VIY5	522 aa	Predicted RBP	6.83	□□□□□ -1.32
PTCD3-212	ENST00000477520	ZNF295-AS1	Q8N0V1	137 aa		6.83	□□□□□ -1.32
PTCD3-212	ENST00000477520	C1orf216	Q8TAB5	229 aa		6.83	□□□□□ -1.32
PTCD3-212	ENST00000477520	DOLK	Q9UPQ8	538 aa		6.83	□□□□□ -1.32
PTCD3-212	ENST00000477520	NDUFB9	Q9Y6M9	179 aa		6.83	□□□□□ -1.32
PTCD3-212	ENST00000477520	PDS5B	Q9NTI5	1447 aa		6.83	□□□□□ -1.32
PTCD3-212	ENST00000477520	USP4	Q13107	963 aa		6.82	□□□□□ -1.32
PTCD3-212	ENST00000477520	ARTN	Q5T4W7	220 aa		6.82	□□□□□ -1.32
PTCD3-212	ENST00000477520	MDFI	Q99750	246 aa		6.82	□□□□□ -1.32
PTCD3-212	ENST00000477520	FAM229A	H3BQW9	127 aa		6.81	□□□□□ -1.32
PTCD3-212	ENST00000477520	INHA	P05111	366 aa		6.81	□□□□□ -1.32
PTCD3-212	ENST00000477520	GDF10	P55107	478 aa		6.81	□□□□□ -1.32
PTCD3-212	ENST00000477520	COL9A3	Q14050	684 aa	Predicted RBP	6.81	□□□□□ -1.32
PTCD3-212	ENST00000477520	ARSJ	Q5FYB0	599 aa	Predicted RBP	6.81	□□□□□ -1.32
PTCD3-212	ENST00000477520	ZIC5	Q96T25	663 aa		6.81	□□□□□ -1.32
PTCD3-212	ENST00000477520	NIFK	Q9BYG3	293 aa	Known RBP	6.81	□□□□□ -1.32
PTCD3-212	ENST00000477520	NES	P48681	1621 aa		6.8	□□□□□ -1.32
PTCD3-212	ENST00000477520	FAM157B	P0CG42	384 aa		6.8	□□□□□ -1.32
PTCD3-212	ENST00000477520	OXLD1	Q5BKU9	147 aa		6.8	□□□□□ -1.32
PTCD3-212	ENST00000477520	ZFP64	Q9NPA5	681 aa		6.8	□□□□□ -1.32
PTCD3-212	ENST00000477520	SNRK	Q9NRH2	765 aa		6.8	□□□□□ -1.32
PTCD3-212	ENST00000477520	PRR12	Q9ULL5	1215 aa		6.8	□□□□□ -1.32
PTCD3-212	ENST00000477520	USP3	Q9Y6I4	520 aa		6.8	□□□□□ -1.32
PTCD3-212	ENST00000477520	PRDM2	Q13029	1718 aa		6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	ELOA3C	A0A087WX78	387 aa	Predicted RBP	6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	ELOA3D	A6NLF2	546 aa	Predicted RBP	6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	SOCS7	O14512	581 aa		6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	EFS	O43281	561 aa		6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	SMTN	P53814	917 aa		6.79	□□□□□ -1.32
PTCD3-212	ENST00000477520	ELOA3B	Q3SY89	546 aa		6.79	□□□□□ -1.32

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