RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MTMR2Q13614 643 aa10.18□□□□□ -0.78
CCDC88A-213ENST00000476903 LYPD8Q6UX82 237 aa10.18□□□□□ -0.78
CCDC88A-213ENST00000476903 FOXJ1Q92949 421 aa10.18□□□□□ -0.78
CCDC88A-213ENST00000476903 ITPKCQ96DU7 683 aa10.18□□□□□ -0.78
CCDC88A-213ENST00000476903 TMEM94Q12767 1356 aa10.17□□□□□ -0.78
CCDC88A-213ENST00000476903 ZIC2O95409 532 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-213ENST00000476903 GRM5P41594 1212 aa10.17□□□□□ -0.78
CCDC88A-213ENST00000476903 NUTM2DQ5VT03 806 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-213ENST00000476903 PROSER2Q86WR7 435 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-213ENST00000476903 KCTD17Q8N5Z5 321 aa10.17□□□□□ -0.78
CCDC88A-213ENST00000476903 FAM174AQ8TBP5 190 aa10.17□□□□□ -0.78
CCDC88A-213ENST00000476903 TBX22Q9Y458 520 aa10.17□□□□□ -0.78
CCDC88A-213ENST00000476903 ADAMTS13Q76LX8 1427 aa10.16□□□□□ -0.78
CCDC88A-213ENST00000476903 SPDYE5A6NIY4 337 aa10.16□□□□□ -0.78
CCDC88A-213ENST00000476903 KRT76Q01546 638 aa10.16□□□□□ -0.78
CCDC88A-213ENST00000476903 ZNF326Q5BKZ1 582 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-213ENST00000476903 C4orf48Q5BLP8 95 aa10.16□□□□□ -0.78
CCDC88A-213ENST00000476903 PIK3R4Q99570 1358 aa10.15□□□□□ -0.78
CCDC88A-213ENST00000476903 NRXN3Q9Y4C0 1643 aa10.15□□□□□ -0.78
CCDC88A-213ENST00000476903 SETBP1Q9Y6X0 1596 aa10.15□□□□□ -0.78
CCDC88A-213ENST00000476903 F12P00748 615 aaPredicted RBP10.15□□□□□ -0.78
CCDC88A-213ENST00000476903 NEXMIFQ5QGS0 1516 aa10.15□□□□□ -0.78
CCDC88A-213ENST00000476903 MSH6P52701 1360 aa10.14□□□□□ -0.79
CCDC88A-213ENST00000476903 MAN1A2O60476 641 aa10.14□□□□□ -0.79
CCDC88A-213ENST00000476903 C6orf118Q5T5N4 469 aa10.14□□□□□ -0.79
CCDC88A-213ENST00000476903 ROBO1Q9Y6N7 1651 aa10.13□□□□□ -0.79
CCDC88A-213ENST00000476903 CFAP99D6REC4 459 aa10.13□□□□□ -0.79
CCDC88A-213ENST00000476903 ILDR2Q71H61 639 aa10.13□□□□□ -0.79
CCDC88A-213ENST00000476903 GPR161Q8N6U8 529 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-213ENST00000476903 KRI1Q8N9T8 703 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-213ENST00000476903 NCOA3Q9Y6Q9 1424 aa10.13□□□□□ -0.79
CCDC88A-213ENST00000476903 MED1Q15648 1581 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-213ENST00000476903 SOS2Q07890 1332 aaPredicted RBP10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 ACIN1Q9UKV3 1341 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 PPLO60437 1756 aa10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 GJA5P36382 358 aa10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 NR5A1Q13285 461 aa10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 MAP10Q9P2G4 905 aa10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 DNMT3LQ9UJW3 386 aa10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 PCDHB15Q9Y5E8 787 aa10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 FAM135BQ49AJ0 1406 aa10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 XRN1Q8IZH2 1706 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-213ENST00000476903 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-213ENST00000476903 SOCS7O14512 581 aa10.11□□□□□ -0.79
CCDC88A-213ENST00000476903 MEIOBQ8N635 442 aa10.11□□□□□ -0.79
CCDC88A-213ENST00000476903 PTPRUQ92729 1446 aa10.1□□□□□ -0.79
CCDC88A-213ENST00000476903 CTHP32929 405 aa10.1□□□□□ -0.79
CCDC88A-213ENST00000476903 ARID5BQ14865 1188 aa10.1□□□□□ -0.79
CCDC88A-213ENST00000476903 C14orf37Q86TY3 774 aa10.1□□□□□ -0.79
CCDC88A-213ENST00000476903 AMOTL2Q9Y2J4 779 aa10.1□□□□□ -0.79
CCDC88A-213ENST00000476903 RPGRIP1LQ68CZ1 1315 aa10.09□□□□□ -0.79
CCDC88A-213ENST00000476903 CCDC144AA2RUR9 1427 aa10.09□□□□□ -0.79
CCDC88A-213ENST00000476903 SETD5Q9C0A6 1442 aa10.09□□□□□ -0.79
CCDC88A-213ENST00000476903 RSBN1LQ6PCB5 846 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-213ENST00000476903 LINC00528Q8N1L1 170 aa10.09□□□□□ -0.79
CCDC88A-213ENST00000476903 MPHOSPH9Q99550 1183 aa10.09□□□□□ -0.79
CCDC88A-213ENST00000476903 SETD1AO15047 1707 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-213ENST00000476903 PHLPP1O60346 1717 aa10.09□□□□□ -0.79
CCDC88A-213ENST00000476903 BMP2P12643 396 aa10.08□□□□□ -0.8
CCDC88A-213ENST00000476903 RASSF7Q02833 373 aa10.08□□□□□ -0.8
CCDC88A-213ENST00000476903 AMHR2Q16671 573 aa10.08□□□□□ -0.8
CCDC88A-213ENST00000476903 TMEM151AQ8N4L1 468 aa10.08□□□□□ -0.8
CCDC88A-213ENST00000476903 SLAIN2Q9P270 581 aa10.08□□□□□ -0.8
CCDC88A-213ENST00000476903 METP08581 1390 aa10.08□□□□□ -0.8
CCDC88A-213ENST00000476903 IFT172Q9UG01 1749 aa10.07□□□□□ -0.8
CCDC88A-213ENST00000476903 TULP1O00294 542 aaPredicted RBP10.07□□□□□ -0.8
CCDC88A-213ENST00000476903 ATF3P18847 181 aa10.07□□□□□ -0.8
CCDC88A-213ENST00000476903 C1QTNF2Q9BXJ5 285 aa10.07□□□□□ -0.8
CCDC88A-213ENST00000476903 C19orf44Q9H6X5 657 aa10.07□□□□□ -0.8
CCDC88A-213ENST00000476903 ADAMTS8Q9UP79 889 aa10.07□□□□□ -0.8
CCDC88A-213ENST00000476903 DCCP43146 1447 aa10.07□□□□□ -0.8
CCDC88A-213ENST00000476903 HRCP23327 699 aa10.06□□□□□ -0.8
CCDC88A-213ENST00000476903 GIGYF2Q6Y7W6 1299 aaKnown RBP10.06□□□□□ -0.8
CCDC88A-213ENST00000476903 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.06□□□□□ -0.8
CCDC88A-213ENST00000476903 BEGAINQ9BUH8 593 aa10.06□□□□□ -0.8
CCDC88A-213ENST00000476903 TBC1D2Q9BYX2 928 aa10.06□□□□□ -0.8
CCDC88A-213ENST00000476903 RAB3GAP2Q9H2M9 1393 aa10.05□□□□□ -0.8
CCDC88A-213ENST00000476903 SPTLC1O15269 473 aa10.05□□□□□ -0.8
CCDC88A-213ENST00000476903 PER1O15534 1290 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-213ENST00000476903 GDF11O95390 407 aa10.05□□□□□ -0.8
CCDC88A-213ENST00000476903 CNTNAP3BQ96NU0 1288 aa10.05□□□□□ -0.8
CCDC88A-213ENST00000476903 CNTNAP3Q9BZ76 1288 aa10.05□□□□□ -0.8
CCDC88A-213ENST00000476903 NALCNQ8IZF0 1738 aa10.04□□□□□ -0.8
CCDC88A-213ENST00000476903 SH3RF1Q7Z6J0 888 aa10.04□□□□□ -0.8
CCDC88A-213ENST00000476903 PTCH1Q13635 1447 aa10.04□□□□□ -0.8
CCDC88A-213ENST00000476903 SPATA31E1Q6ZUB1 1445 aa10.04□□□□□ -0.8
CCDC88A-213ENST00000476903 COL16A1Q07092 1604 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-213ENST00000476903 ANKRD30BQ9BXX2 1392 aa10.03□□□□□ -0.8
CCDC88A-213ENST00000476903 BARGINQ6ZT62 677 aa10.03□□□□□ -0.8
CCDC88A-213ENST00000476903 NANOS1Q8WY41 292 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-213ENST00000476903 ADGRL3Q9HAR2 1447 aa10.03□□□□□ -0.8
CCDC88A-213ENST00000476903 AHDC1Q5TGY3 1603 aaPredicted RBP10.03□□□□□ -0.8
CCDC88A-213ENST00000476903 PRAG1Q86YV5 1406 aa10.02□□□□□ -0.81
CCDC88A-213ENST00000476903 TTLL12Q14166 644 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-213ENST00000476903 RGL3Q3MIN7 710 aa10.02□□□□□ -0.81
CCDC88A-213ENST00000476903 ZNF385CQ66K41 422 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-213ENST00000476903 BPHLQ86WA6 291 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-213ENST00000476903 UPP2O95045 317 aa10.01□□□□□ -0.81
CCDC88A-213ENST00000476903 HAP1P54257 671 aaPredicted RBP10.01□□□□□ -0.81
CCDC88A-213ENST00000476903 PTSQ03393 145 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms