RNA–Protein interactions for RNA: ENST00000475952.1

NUDCD3-206, Transcript of NudC domain containing 3, humanhuman

TSL 2

Gene NUDCD3, Length 983 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-206ENST00000475952 NEFMP07197 916 aa15.17■□□□□ 0.02
NUDCD3-206ENST00000475952 CRKLP46109 303 aaKnown RBP15.17■□□□□ 0.02
NUDCD3-206ENST00000475952 DDX10Q13206 875 aaKnown RBP15.17■□□□□ 0.02
NUDCD3-206ENST00000475952 SLC39A6Q13433 755 aa15.17■□□□□ 0.02
NUDCD3-206ENST00000475952 RALBP1Q15311 655 aa15.17■□□□□ 0.02
NUDCD3-206ENST00000475952 PHACTR3Q96KR7 559 aa15.17■□□□□ 0.02
NUDCD3-206ENST00000475952 SCN7AQ01118 1682 aa15.16■□□□□ 0.02
NUDCD3-206ENST00000475952 ZEB1P37275 1124 aaPredicted RBP15.16■□□□□ 0.02
NUDCD3-206ENST00000475952 HTRA3P83110 453 aa15.16■□□□□ 0.02
NUDCD3-206ENST00000475952 MMP10P09238 476 aa15.15■□□□□ 0.02
NUDCD3-206ENST00000475952 RFC4P35249 363 aa15.15■□□□□ 0.02
NUDCD3-206ENST00000475952 VSIG10Q8N0Z9 540 aa15.15■□□□□ 0.02
NUDCD3-206ENST00000475952 JMYQ8N9B5 988 aa15.15■□□□□ 0.02
NUDCD3-206ENST00000475952 IL17REQ8NFR9 667 aa15.15■□□□□ 0.02
NUDCD3-206ENST00000475952 RTF1Q92541 710 aaKnown RBP15.15■□□□□ 0.02
NUDCD3-206ENST00000475952 KLRG1Q96E93 195 aa15.15■□□□□ 0.02
NUDCD3-206ENST00000475952 BCORQ6W2J9 1755 aa15.15■□□□□ 0.02
NUDCD3-206ENST00000475952 CAPN15O75808 1086 aa15.14■□□□□ 0.01
NUDCD3-206ENST00000475952 DNAJC10Q8IXB1 793 aa15.14■□□□□ 0.01
NUDCD3-206ENST00000475952 RBM46Q8TBY0 533 aaKnown RBP15.14■□□□□ 0.01
NUDCD3-206ENST00000475952 ARHGEF1Q92888 912 aaKnown RBP15.14■□□□□ 0.01
NUDCD3-206ENST00000475952 BCS1LQ9Y276 419 aa15.14■□□□□ 0.01
NUDCD3-206ENST00000475952 NLGN1Q8N2Q7 840 aa15.13■□□□□ 0.01
NUDCD3-206ENST00000475952 CCDC87Q9NVE4 849 aa15.13■□□□□ 0.01
NUDCD3-206ENST00000475952 MYBBP1AQ9BQG0 1328 aaKnown RBP15.13■□□□□ 0.01
NUDCD3-206ENST00000475952 A0A0G2JLW4 131 aa15.12■□□□□ 0.01
NUDCD3-206ENST00000475952 TGFB2P61812 414 aa15.12■□□□□ 0.01
NUDCD3-206ENST00000475952 ZNF790Q6PG37 636 aa15.12■□□□□ 0.01
NUDCD3-206ENST00000475952 PNNQ9H307 717 aaKnown RBP15.12■□□□□ 0.01
NUDCD3-206ENST00000475952 NRXN2Q9P2S2 1712 aa15.12■□□□□ 0.01
NUDCD3-206ENST00000475952 COL15A1P39059 1388 aa15.11■□□□□ 0.01
NUDCD3-206ENST00000475952 HEG1Q9ULI3 1381 aa15.11■□□□□ 0.01
NUDCD3-206ENST00000475952 DLEC1Q9Y238 1755 aa15.11■□□□□ 0.01
NUDCD3-206ENST00000475952 BTBD11A6QL63 1104 aa15.11■□□□□ 0.01
NUDCD3-206ENST00000475952 HTATSF1O43719 755 aaKnown RBP15.11■□□□□ 0.01
NUDCD3-206ENST00000475952 CYP19A1P11511 503 aaPredicted RBP15.11■□□□□ 0.01
NUDCD3-206ENST00000475952 ARHGAP27Q6ZUM4 889 aa15.11■□□□□ 0.01
NUDCD3-206ENST00000475952 USP42Q9H9J4 1324 aaKnown RBP15.11■□□□□ 0.01
NUDCD3-206ENST00000475952 MAPK8IP3Q9UPT6 1336 aa15.11■□□□□ 0.01
NUDCD3-206ENST00000475952 GYS1P13807 737 aa15.1■□□□□ 0.01
NUDCD3-206ENST00000475952 INTS5Q6P9B9 1019 aaKnown RBP15.1■□□□□ 0.01
NUDCD3-206ENST00000475952 FMNL2Q96PY5 1086 aa15.1■□□□□ 0.01
NUDCD3-206ENST00000475952 SOS1Q07889 1333 aaPredicted RBP15.1■□□□□ 0.01
NUDCD3-206ENST00000475952 STARD3NLO95772 234 aa15.09■□□□□ 0.01
NUDCD3-206ENST00000475952 PRELPP51888 382 aa15.09■□□□□ 0.01
NUDCD3-206ENST00000475952 FSTL1Q12841 308 aa15.09■□□□□ 0.01
NUDCD3-206ENST00000475952 MCM10Q7L590 875 aa15.09■□□□□ 0.01
NUDCD3-206ENST00000475952 TNS4Q8IZW8 715 aa15.09■□□□□ 0.01
NUDCD3-206ENST00000475952 ZNF496Q96IT1 587 aaPredicted RBP15.09■□□□□ 0.01
NUDCD3-206ENST00000475952 TEX13AQ9BXU3 409 aaPredicted RBP15.09■□□□□ 0.01
NUDCD3-206ENST00000475952 ZBTB1Q9Y2K1 713 aa15.09■□□□□ 0.01
NUDCD3-206ENST00000475952 ZPR1O75312 459 aa15.08■□□□□ 0
NUDCD3-206ENST00000475952 DPEP1P16444 411 aa15.08■□□□□ 0
NUDCD3-206ENST00000475952 C9orf131Q5VYM1 1079 aa15.08■□□□□ 0
NUDCD3-206ENST00000475952 C16orf71Q8IYS4 520 aaPredicted RBP15.08■□□□□ 0
NUDCD3-206ENST00000475952 PARP3Q9Y6F1 533 aa15.08■□□□□ 0
NUDCD3-206ENST00000475952 CACNA1SQ13698 1873 aa15.08■□□□□ 0
NUDCD3-206ENST00000475952 PLEKHF1Q96S99 279 aa15.07■□□□□ 0
NUDCD3-206ENST00000475952 SRP68Q9UHB9 627 aaKnown RBP15.07■□□□□ 0
NUDCD3-206ENST00000475952 CCDC88AQ3V6T2 1871 aa15.07■□□□□ 0
NUDCD3-206ENST00000475952 KCNA3P22001 575 aa15.06■□□□□ 0
NUDCD3-206ENST00000475952 DCTN1Q14203 1278 aa15.06■□□□□ 0
NUDCD3-206ENST00000475952 TIAM2Q8IVF5 1701 aa15.06■□□□□ 0
NUDCD3-206ENST00000475952 NUP98P52948 1817 aa15.06■□□□□ 0
NUDCD3-206ENST00000475952 CANXP27824 592 aaKnown RBP15.05■□□□□ -0
NUDCD3-206ENST00000475952 NFE2L2Q16236 605 aa15.05■□□□□ -0
NUDCD3-206ENST00000475952 NARFQ9UHQ1 456 aa15.05■□□□□ -0
NUDCD3-206ENST00000475952 ANKRD31Q8N7Z5 1873 aa15.05■□□□□ -0
NUDCD3-206ENST00000475952 KDM2BQ8NHM5 1336 aa15.04■□□□□ -0
NUDCD3-206ENST00000475952 A0A087WZG4 1122 aa15.04■□□□□ -0
NUDCD3-206ENST00000475952 FKBP8Q14318 412 aa15.04■□□□□ -0
NUDCD3-206ENST00000475952 USPL1Q5W0Q7 1092 aa15.04■□□□□ -0
NUDCD3-206ENST00000475952 NPM2Q86SE8 214 aaKnown RBP15.04■□□□□ -0
NUDCD3-206ENST00000475952 KCNQ3O43525 872 aa15.03■□□□□ -0
NUDCD3-206ENST00000475952 IL6STP40189 918 aaPredicted RBP15.03■□□□□ -0
NUDCD3-206ENST00000475952 WDR43Q15061 677 aaKnown RBP eCLIP15.03■□□□□ -0
NUDCD3-206ENST00000475952 TAF7Q15545 349 aaPredicted RBP15.03■□□□□ -0
NUDCD3-206ENST00000475952 PNISRQ8TF01 805 aaKnown RBP15.03■□□□□ -0
NUDCD3-206ENST00000475952 PRKRIP1Q9H875 184 aaPredicted RBP15.03■□□□□ -0
NUDCD3-206ENST00000475952 SNRPA1P09661 255 aaKnown RBP15.02■□□□□ -0
NUDCD3-206ENST00000475952 EIF5P55010 431 aaKnown RBP15.02■□□□□ -0
NUDCD3-206ENST00000475952 RRAGCQ9HB90 399 aa15.02■□□□□ -0
NUDCD3-206ENST00000475952 RNF181Q9P0P0 153 aa15.02■□□□□ -0
NUDCD3-206ENST00000475952 ZNF330Q9Y3S2 320 aaPredicted RBP15.02■□□□□ -0
NUDCD3-206ENST00000475952 ARFGEF2Q9Y6D5 1785 aa15.01□□□□□ -0.01
NUDCD3-206ENST00000475952 DDR1Q08345 913 aa15.01□□□□□ -0.01
NUDCD3-206ENST00000475952 COL11A2P13942 1736 aaPredicted RBP15□□□□□ -0.01
NUDCD3-206ENST00000475952 POLRMTO00411 1230 aaKnown RBP15□□□□□ -0.01
NUDCD3-206ENST00000475952 LMOD3Q0VAK6 560 aa15□□□□□ -0.01
NUDCD3-206ENST00000475952 SMC1BQ8NDV3 1235 aa15□□□□□ -0.01
NUDCD3-206ENST00000475952 PIM2Q9P1W9 311 aa15□□□□□ -0.01
NUDCD3-206ENST00000475952 ANKRD36CQ5JPF3 1778 aa15□□□□□ -0.01
NUDCD3-206ENST00000475952 A1BGP04217 495 aa14.99□□□□□ -0.01
NUDCD3-206ENST00000475952 HSPA1AP0DMV8 641 aaKnown RBP14.99□□□□□ -0.01
NUDCD3-206ENST00000475952 HSPA1BP0DMV9 641 aaKnown RBP14.99□□□□□ -0.01
NUDCD3-206ENST00000475952 TM4SF1P30408 202 aa14.99□□□□□ -0.01
NUDCD3-206ENST00000475952 DALRD3Q5D0E6 543 aaKnown RBP14.99□□□□□ -0.01
NUDCD3-206ENST00000475952 RIPK4P57078 832 aa14.98□□□□□ -0.01
NUDCD3-206ENST00000475952 NFIXQ14938 502 aa14.98□□□□□ -0.01
NUDCD3-206ENST00000475952 BCL2L12Q9HB09 334 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms