RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 LGR6Q9HBX8 967 aa8.54□□□□□ -1.04
ATG4A-207ENST00000474825 THRAP3Q9Y2W1 955 aaKnown RBP8.54□□□□□ -1.04
ATG4A-207ENST00000474825 AFF2P51816 1311 aa8.54□□□□□ -1.04
ATG4A-207ENST00000474825 MRC1P22897 1456 aa8.53□□□□□ -1.04
ATG4A-207ENST00000474825 HEG1Q9ULI3 1381 aa8.53□□□□□ -1.04
ATG4A-207ENST00000474825 ADAMTS2O95450 1211 aa8.53□□□□□ -1.04
ATG4A-207ENST00000474825 HSP90AB1P08238 724 aaKnown RBP8.53□□□□□ -1.04
ATG4A-207ENST00000474825 HOXB3P14651 431 aaPredicted RBP8.53□□□□□ -1.04
ATG4A-207ENST00000474825 EVA1CP58658 441 aa8.53□□□□□ -1.04
ATG4A-207ENST00000474825 C1orf141Q5JVX7 400 aa8.53□□□□□ -1.04
ATG4A-207ENST00000474825 TSPYL6Q8N831 410 aa8.53□□□□□ -1.04
ATG4A-207ENST00000474825 SSH1Q8WYL5 1049 aa8.53□□□□□ -1.04
ATG4A-207ENST00000474825 KDM6AO15550 1401 aaPredicted RBP8.53□□□□□ -1.04
ATG4A-207ENST00000474825 HOXB1P14653 301 aaPredicted RBP8.52□□□□□ -1.05
ATG4A-207ENST00000474825 TWISTNBQ3B726 338 aaPredicted RBP8.52□□□□□ -1.05
ATG4A-207ENST00000474825 ZCRB1Q8TBF4 217 aaKnown RBP8.52□□□□□ -1.05
ATG4A-207ENST00000474825 ARHGAP45Q92619 1136 aa8.52□□□□□ -1.05
ATG4A-207ENST00000474825 DCAF5Q96JK2 942 aa8.52□□□□□ -1.05
ATG4A-207ENST00000474825 CDCA7Q9BWT1 371 aaPredicted RBP8.52□□□□□ -1.05
ATG4A-207ENST00000474825 SPATA31A1Q5TZJ5 1347 aa8.52□□□□□ -1.05
ATG4A-207ENST00000474825 NRAPQ86VF7 1730 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 NWD2Q9ULI1 1742 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 HOXB7P09629 217 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 CHRM1P11229 460 aaPredicted RBP8.51□□□□□ -1.05
ATG4A-207ENST00000474825 RBM6P78332 1123 aaKnown RBP8.51□□□□□ -1.05
ATG4A-207ENST00000474825 GSE1Q14687 1217 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 MPRIPQ6WCQ1 1025 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 BARGINQ6ZT62 677 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 MRPL50Q8N5N7 158 aaKnown RBP8.51□□□□□ -1.05
ATG4A-207ENST00000474825 RNF166Q96A37 237 aaPredicted RBP8.51□□□□□ -1.05
ATG4A-207ENST00000474825 SLC52A2Q9HAB3 445 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 STRN4Q9NRL3 753 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 PPP4R2Q9NY27 417 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 TSPYL4Q9UJ04 414 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 LAS1LQ9Y4W2 734 aaKnown RBP8.51□□□□□ -1.05
ATG4A-207ENST00000474825 PARP4Q9UKK3 1724 aaKnown RBP8.51□□□□□ -1.05
ATG4A-207ENST00000474825 SPATA31A5Q5VU36 1347 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 SPATA31A7Q8IWB4 1347 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 PCDH11XQ9BZA7 1347 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 PCDH11YQ9BZA8 1340 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 BCL9LQ86UU0 1499 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 LRP6O75581 1613 aa8.51□□□□□ -1.05
ATG4A-207ENST00000474825 PLCH1Q4KWH8 1693 aa8.5□□□□□ -1.05
ATG4A-207ENST00000474825 ERVV-2B6SEH9 535 aa8.5□□□□□ -1.05
ATG4A-207ENST00000474825 PLIN1O60240 522 aa8.5□□□□□ -1.05
ATG4A-207ENST00000474825 PSEN1P49768 467 aa8.5□□□□□ -1.05
ATG4A-207ENST00000474825 EIF4A1P60842 406 aaKnown RBP8.5□□□□□ -1.05
ATG4A-207ENST00000474825 AAMPQ13685 434 aa8.5□□□□□ -1.05
ATG4A-207ENST00000474825 C20orf194Q5TEA3 1177 aa8.5□□□□□ -1.05
ATG4A-207ENST00000474825 UNC5CLQ8IV45 518 aa8.5□□□□□ -1.05
ATG4A-207ENST00000474825 USP21Q9UK80 565 aa8.5□□□□□ -1.05
ATG4A-207ENST00000474825 KIF16BQ96L93 1317 aa8.5□□□□□ -1.05
ATG4A-207ENST00000474825 SIPA1L3O60292 1781 aaPredicted RBP8.49□□□□□ -1.05
ATG4A-207ENST00000474825 MS4A1P11836 297 aa8.49□□□□□ -1.05
ATG4A-207ENST00000474825 TEFQ10587 303 aa8.49□□□□□ -1.05
ATG4A-207ENST00000474825 VPS72Q15906 364 aa8.49□□□□□ -1.05
ATG4A-207ENST00000474825 KRT24Q2M2I5 525 aa8.49□□□□□ -1.05
ATG4A-207ENST00000474825 CHMP4AQ9BY43 222 aa8.49□□□□□ -1.05
ATG4A-207ENST00000474825 SMC4Q9NTJ3 1288 aa8.49□□□□□ -1.05
ATG4A-207ENST00000474825 MIS18AQ9NYP9 233 aa8.49□□□□□ -1.05
ATG4A-207ENST00000474825 TRPC5Q9UL62 973 aaPredicted RBP8.49□□□□□ -1.05
ATG4A-207ENST00000474825 KDM3BQ7LBC6 1761 aa8.48□□□□□ -1.05
ATG4A-207ENST00000474825 BTBD11A6QL63 1104 aa8.48□□□□□ -1.05
ATG4A-207ENST00000474825 IPO8O15397 1037 aaKnown RBP8.48□□□□□ -1.05
ATG4A-207ENST00000474825 IRX6P78412 446 aaPredicted RBP8.48□□□□□ -1.05
ATG4A-207ENST00000474825 ZKSCAN2Q63HK3 967 aa8.48□□□□□ -1.05
ATG4A-207ENST00000474825 ATF7IPQ6VMQ6 1270 aa8.48□□□□□ -1.05
ATG4A-207ENST00000474825 EXOC6Q8TAG9 804 aa8.48□□□□□ -1.05
ATG4A-207ENST00000474825 UPF1Q92900 1129 aaKnown RBP eCLIP8.48□□□□□ -1.05
ATG4A-207ENST00000474825 SHANK3Q9BYB0 1731 aa8.48□□□□□ -1.05
ATG4A-207ENST00000474825 SCN11AQ9UI33 1791 aa8.48□□□□□ -1.05
ATG4A-207ENST00000474825 TNS2Q63HR2 1409 aa8.47□□□□□ -1.05
ATG4A-207ENST00000474825 TRIM27P14373 513 aa8.47□□□□□ -1.05
ATG4A-207ENST00000474825 CRBNQ96SW2 442 aa8.47□□□□□ -1.05
ATG4A-207ENST00000474825 NOB1Q9ULX3 412 aaKnown RBP8.47□□□□□ -1.05
ATG4A-207ENST00000474825 BOLA1Q9Y3E2 137 aa8.47□□□□□ -1.05
ATG4A-207ENST00000474825 EXOC5O00471 708 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 ELL2O00472 640 aaPredicted RBP8.46□□□□□ -1.06
ATG4A-207ENST00000474825 KCNQ3O43525 872 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 ONECUT3O60422 494 aaPredicted RBP8.46□□□□□ -1.06
ATG4A-207ENST00000474825 GIGYF1O75420 1035 aaPredicted RBP8.46□□□□□ -1.06
ATG4A-207ENST00000474825 RLBP1P12271 317 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 DOK7Q18PE1 504 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 CCDC30Q5VVM6 783 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 ZNF790Q6PG37 636 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 DZIP1LQ8IYY4 767 aaKnown RBP8.46□□□□□ -1.06
ATG4A-207ENST00000474825 ZNF710Q8N1W2 664 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 NFATC2IPQ8NCF5 419 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 BCL2L13Q9BXK5 485 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 ABCC4O15439 1325 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 PTPRCP08575 1304 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.46□□□□□ -1.06
ATG4A-207ENST00000474825 RGS12O14924 1447 aa8.46□□□□□ -1.06
ATG4A-207ENST00000474825 G3V3G9 751 aa8.45□□□□□ -1.06
ATG4A-207ENST00000474825 DPY19L2Q6NUT2 758 aa8.45□□□□□ -1.06
ATG4A-207ENST00000474825 API5Q9BZZ5 524 aaKnown RBP8.45□□□□□ -1.06
ATG4A-207ENST00000474825 TNNQ9UQP3 1299 aa8.45□□□□□ -1.06
ATG4A-207ENST00000474825 CABP4P57796 275 aa8.44□□□□□ -1.06
ATG4A-207ENST00000474825 MVPQ14764 893 aaKnown RBP8.44□□□□□ -1.06
ATG4A-207ENST00000474825 PANK1Q8TE04 598 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms