RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CHRNA4P43681 627 aa8.77□□□□□ -1.01
CCDC88A-212ENST00000474059 SMTNP53814 917 aa8.77□□□□□ -1.01
CCDC88A-212ENST00000474059 TNP2Q05952 138 aa8.77□□□□□ -1.01
CCDC88A-212ENST00000474059 CD163Q86VB7 1156 aa8.77□□□□□ -1.01
CCDC88A-212ENST00000474059 C1QTNF9BB2RNN3 333 aa8.76□□□□□ -1.01
CCDC88A-212ENST00000474059 MAPTP10636 758 aaKnown RBP8.76□□□□□ -1.01
CCDC88A-212ENST00000474059 GTF2E1P29083 439 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-212ENST00000474059 MTFR1Q15390 333 aa8.76□□□□□ -1.01
CCDC88A-212ENST00000474059 NLRP8Q86W28 1048 aa8.76□□□□□ -1.01
CCDC88A-212ENST00000474059 PLPP7Q8NBV4 271 aa8.76□□□□□ -1.01
CCDC88A-212ENST00000474059 SLC4A9Q96Q91 983 aa8.76□□□□□ -1.01
CCDC88A-212ENST00000474059 GDPD2Q9HCC8 539 aa8.76□□□□□ -1.01
CCDC88A-212ENST00000474059 A0A1W2PNR3 127 aa8.75□□□□□ -1.01
CCDC88A-212ENST00000474059 DCDC2BA2VCK2 349 aa8.75□□□□□ -1.01
CCDC88A-212ENST00000474059 PIK3CDO00329 1044 aa8.75□□□□□ -1.01
CCDC88A-212ENST00000474059 GNB5O14775 395 aa8.75□□□□□ -1.01
CCDC88A-212ENST00000474059 CD33P20138 364 aa8.75□□□□□ -1.01
CCDC88A-212ENST00000474059 FAM182BQ5T319 152 aa8.75□□□□□ -1.01
CCDC88A-212ENST00000474059 C1orf216Q8TAB5 229 aa8.75□□□□□ -1.01
CCDC88A-212ENST00000474059 MDFIQ99750 246 aa8.75□□□□□ -1.01
CCDC88A-212ENST00000474059 STRN4Q9NRL3 753 aa8.75□□□□□ -1.01
CCDC88A-212ENST00000474059 ATXN7O15265 892 aaPredicted RBP8.74□□□□□ -1.01
CCDC88A-212ENST00000474059 AMPD1P23109 780 aa8.74□□□□□ -1.01
CCDC88A-212ENST00000474059 FIGNL1Q6PIW4 674 aa8.74□□□□□ -1.01
CCDC88A-212ENST00000474059 CHSY3Q70JA7 882 aa8.74□□□□□ -1.01
CCDC88A-212ENST00000474059 TRIM11Q96F44 468 aa8.74□□□□□ -1.01
CCDC88A-212ENST00000474059 ZIC5Q96T25 663 aa8.74□□□□□ -1.01
CCDC88A-212ENST00000474059 NIFKQ9BYG3 293 aaKnown RBP8.74□□□□□ -1.01
CCDC88A-212ENST00000474059 PCDHGA11Q9Y5H2 935 aa8.74□□□□□ -1.01
CCDC88A-212ENST00000474059 SERTAD1Q9UHV2 236 aa8.73□□□□□ -1.01
CCDC88A-212ENST00000474059 MAP7D1Q3KQU3 841 aa8.72□□□□□ -1.01
CCDC88A-212ENST00000474059 Q8N3U1 123 aa8.72□□□□□ -1.01
CCDC88A-212ENST00000474059 ZDHHC1Q8WTX9 485 aa8.72□□□□□ -1.01
CCDC88A-212ENST00000474059 KRTAP4-8Q9BYQ9 185 aa8.72□□□□□ -1.01
CCDC88A-212ENST00000474059 CDK2AP1O14519 115 aa8.71□□□□□ -1.02
CCDC88A-212ENST00000474059 EFSO43281 561 aa8.71□□□□□ -1.02
CCDC88A-212ENST00000474059 FAM157BP0CG42 384 aa8.71□□□□□ -1.02
CCDC88A-212ENST00000474059 AIDAQ96BJ3 306 aa8.71□□□□□ -1.02
CCDC88A-212ENST00000474059 SIRT1Q96EB6 747 aa8.71□□□□□ -1.02
CCDC88A-212ENST00000474059 ZDHHC3Q9NYG2 299 aa8.71□□□□□ -1.02
CCDC88A-212ENST00000474059 A6NJY4 79 aa8.7□□□□□ -1.02
CCDC88A-212ENST00000474059 ADH6P28332 368 aa8.7□□□□□ -1.02
CCDC88A-212ENST00000474059 TXLNAP40222 546 aa8.7□□□□□ -1.02
CCDC88A-212ENST00000474059 C7orf43Q8WVR3 580 aa8.7□□□□□ -1.02
CCDC88A-212ENST00000474059 AVENQ9NQS1 362 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-212ENST00000474059 KHNYNO15037 678 aaKnown RBP8.69□□□□□ -1.02
CCDC88A-212ENST00000474059 ABL2P42684 1182 aa8.69□□□□□ -1.02
CCDC88A-212ENST00000474059 PCBP4P57723 403 aaKnown RBP8.69□□□□□ -1.02
CCDC88A-212ENST00000474059 SAMD5Q5TGI4 173 aa8.69□□□□□ -1.02
CCDC88A-212ENST00000474059 ZNF468Q5VIY5 522 aaPredicted RBP8.69□□□□□ -1.02
CCDC88A-212ENST00000474059 PARP3Q9Y6F1 533 aa8.69□□□□□ -1.02
CCDC88A-212ENST00000474059 EPHA4P54764 986 aa8.68□□□□□ -1.02
CCDC88A-212ENST00000474059 COL9A3Q14050 684 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-212ENST00000474059 MCM6Q14566 821 aa8.67□□□□□ -1.02
CCDC88A-212ENST00000474059 ARSJQ5FYB0 599 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-212ENST00000474059 NBPF1Q3BBV0 1214 aa8.66□□□□□ -1.02
CCDC88A-212ENST00000474059 SCHIP1Q9P0W5 487 aaPredicted RBP8.66□□□□□ -1.02
CCDC88A-212ENST00000474059 WASHC4Q2M389 1173 aa8.65□□□□□ -1.02
CCDC88A-212ENST00000474059 SH3PXD2AQ5TCZ1 1133 aa8.65□□□□□ -1.02
CCDC88A-212ENST00000474059 NOP53Q9NZM5 478 aaKnown RBP8.65□□□□□ -1.02
CCDC88A-212ENST00000474059 CABP1Q9NZU7 370 aa8.65□□□□□ -1.02
CCDC88A-212ENST00000474059 PLVAPQ9BX97 442 aa8.64□□□□□ -1.03
CCDC88A-212ENST00000474059 ZNF358Q9NW07 568 aa8.64□□□□□ -1.03
CCDC88A-212ENST00000474059 EML1O00423 815 aa8.63□□□□□ -1.03
CCDC88A-212ENST00000474059 SLC24A1O60721 1099 aa8.63□□□□□ -1.03
CCDC88A-212ENST00000474059 TATP17735 454 aaPredicted RBP8.63□□□□□ -1.03
CCDC88A-212ENST00000474059 DOC2BQ14184 412 aa8.63□□□□□ -1.03
CCDC88A-212ENST00000474059 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.63□□□□□ -1.03
CCDC88A-212ENST00000474059 ALG2Q9H553 416 aa8.63□□□□□ -1.03
CCDC88A-212ENST00000474059 PRM3Q9NNZ6 103 aa8.63□□□□□ -1.03
CCDC88A-212ENST00000474059 MARK1Q9P0L2 795 aa8.63□□□□□ -1.03
CCDC88A-212ENST00000474059 PIK3R2O00459 728 aa8.62□□□□□ -1.03
CCDC88A-212ENST00000474059 SOX11P35716 441 aa8.62□□□□□ -1.03
CCDC88A-212ENST00000474059 SEMA3FQ13275 785 aa8.62□□□□□ -1.03
CCDC88A-212ENST00000474059 TEAD4Q15561 434 aa8.62□□□□□ -1.03
CCDC88A-212ENST00000474059 FOXD4L6Q3SYB3 417 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-212ENST00000474059 FOXD4L3Q6VB84 417 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-212ENST00000474059 COG6Q9Y2V7 657 aa8.62□□□□□ -1.03
CCDC88A-212ENST00000474059 STARD13Q9Y3M8 1113 aa8.62□□□□□ -1.03
CCDC88A-212ENST00000474059 ELOA3CA0A087WX78 387 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-212ENST00000474059 ELOA3DA6NLF2 546 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-212ENST00000474059 GTF2IP78347 998 aa8.61□□□□□ -1.03
CCDC88A-212ENST00000474059 LAMC2Q13753 1193 aa8.61□□□□□ -1.03
CCDC88A-212ENST00000474059 ELOA3BQ3SY89 546 aa8.61□□□□□ -1.03
CCDC88A-212ENST00000474059 TBCELQ5QJ74 424 aa8.61□□□□□ -1.03
CCDC88A-212ENST00000474059 SYT9Q86SS6 491 aa8.61□□□□□ -1.03
CCDC88A-212ENST00000474059 ELOA3Q8NG57 546 aa8.61□□□□□ -1.03
CCDC88A-212ENST00000474059 SLC30A3Q99726 388 aa8.61□□□□□ -1.03
CCDC88A-212ENST00000474059 SFSWAPQ12872 951 aaKnown RBP8.6□□□□□ -1.03
CCDC88A-212ENST00000474059 SLC9A9Q8IVB4 645 aa8.6□□□□□ -1.03
CCDC88A-212ENST00000474059 L3MBTL2Q969R5 705 aa8.6□□□□□ -1.03
CCDC88A-212ENST00000474059 KIAA1024Q9UPX6 916 aa8.6□□□□□ -1.03
CCDC88A-212ENST00000474059 SPATA31C1P0DKV0 1188 aa8.59□□□□□ -1.03
CCDC88A-212ENST00000474059 SKIP12755 728 aa8.59□□□□□ -1.03
CCDC88A-212ENST00000474059 NCOA4Q13772 614 aa8.59□□□□□ -1.03
CCDC88A-212ENST00000474059 RSPO4Q2I0M5 234 aaPredicted RBP8.59□□□□□ -1.03
CCDC88A-212ENST00000474059 POTEAQ6S8J7 498 aa8.59□□□□□ -1.03
CCDC88A-212ENST00000474059 LRRC69Q6ZNQ3 347 aa8.59□□□□□ -1.03
CCDC88A-212ENST00000474059 ADAMTS19Q8TE59 1207 aa8.59□□□□□ -1.03
CCDC88A-212ENST00000474059 PRR12Q9ULL5 1215 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms