RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 RBM6P78332 1123 aaKnown RBP16.24■□□□□ 0.19
VPS13D-205ENST00000473099 INTS3Q68E01 1043 aaKnown RBP16.24■□□□□ 0.19
VPS13D-205ENST00000473099 ZNF496Q96IT1 587 aaPredicted RBP16.24■□□□□ 0.19
VPS13D-205ENST00000473099 QTRT2Q9H974 415 aaKnown RBP16.24■□□□□ 0.19
VPS13D-205ENST00000473099 HYPKQ9NX55 129 aa16.24■□□□□ 0.19
VPS13D-205ENST00000473099 BCL9O00512 1426 aa16.24■□□□□ 0.19
VPS13D-205ENST00000473099 ATRNO75882 1429 aa16.24■□□□□ 0.19
VPS13D-205ENST00000473099 ZNF831Q5JPB2 1677 aa16.24■□□□□ 0.19
VPS13D-205ENST00000473099 CCT4P50991 539 aaKnown RBP16.23■□□□□ 0.19
VPS13D-205ENST00000473099 CENPQQ7L2Z9 268 aaPredicted RBP16.23■□□□□ 0.19
VPS13D-205ENST00000473099 TRPC5Q9UL62 973 aaPredicted RBP16.23■□□□□ 0.19
VPS13D-205ENST00000473099 FKBP5Q13451 457 aaPredicted RBP16.22■□□□□ 0.19
VPS13D-205ENST00000473099 TEX13AQ9BXU3 409 aaPredicted RBP16.22■□□□□ 0.19
VPS13D-205ENST00000473099 DDX21Q9NR30 783 aaKnown RBP eCLIP16.22■□□□□ 0.19
VPS13D-205ENST00000473099 CHPF2Q9P2E5 772 aa16.22■□□□□ 0.19
VPS13D-205ENST00000473099 AFDNP55196 1824 aaKnown RBP16.22■□□□□ 0.19
VPS13D-205ENST00000473099 NHSQ6T4R5 1651 aa16.21■□□□□ 0.19
VPS13D-205ENST00000473099 ARFGEF2Q9Y6D5 1785 aa16.21■□□□□ 0.19
VPS13D-205ENST00000473099 FAM98CQ17RN3 349 aaKnown RBP16.21■□□□□ 0.19
VPS13D-205ENST00000473099 G2E3Q7L622 706 aa16.21■□□□□ 0.19
VPS13D-205ENST00000473099 VSIG10Q8N0Z9 540 aa16.21■□□□□ 0.19
VPS13D-205ENST00000473099 NECTIN2Q92692 538 aa16.21■□□□□ 0.19
VPS13D-205ENST00000473099 UPF1Q92900 1129 aaKnown RBP eCLIP16.2■□□□□ 0.18
VPS13D-205ENST00000473099 GJD4Q96KN9 370 aaPredicted RBP16.2■□□□□ 0.18
VPS13D-205ENST00000473099 ZBTB40Q9NUA8 1239 aa16.2■□□□□ 0.18
VPS13D-205ENST00000473099 TJP1Q07157 1748 aa16.19■□□□□ 0.18
VPS13D-205ENST00000473099 DDX58O95786 925 aaKnown RBP16.19■□□□□ 0.18
VPS13D-205ENST00000473099 MARCH10Q8NA82 808 aaPredicted RBP16.19■□□□□ 0.18
VPS13D-205ENST00000473099 PIGBQ92521 554 aa16.19■□□□□ 0.18
VPS13D-205ENST00000473099 BTAF1O14981 1849 aa16.19■□□□□ 0.18
VPS13D-205ENST00000473099 KDM2BQ8NHM5 1336 aa16.19■□□□□ 0.18
VPS13D-205ENST00000473099 BRWD3Q6RI45 1802 aa16.18■□□□□ 0.18
VPS13D-205ENST00000473099 ZBTB7BO15156 539 aaPredicted RBP16.18■□□□□ 0.18
VPS13D-205ENST00000473099 RWDD1Q9H446 243 aaPredicted RBP16.18■□□□□ 0.18
VPS13D-205ENST00000473099 NUP188Q5SRE5 1749 aa16.18■□□□□ 0.18
VPS13D-205ENST00000473099 ATP10DQ9P241 1426 aa16.18■□□□□ 0.18
VPS13D-205ENST00000473099 IBTKQ9P2D0 1353 aaPredicted RBP16.16■□□□□ 0.18
VPS13D-205ENST00000473099 ONECUT3O60422 494 aaPredicted RBP16.16■□□□□ 0.18
VPS13D-205ENST00000473099 PHAXQ9H814 394 aaKnown RBP16.16■□□□□ 0.18
VPS13D-205ENST00000473099 ATG3Q9NT62 314 aa16.16■□□□□ 0.18
VPS13D-205ENST00000473099 USP16Q9Y5T5 823 aa16.16■□□□□ 0.18
VPS13D-205ENST00000473099 A0A0G2JS52 829 aa16.15■□□□□ 0.18
VPS13D-205ENST00000473099 PRAMEF22A3QJZ6 481 aa16.15■□□□□ 0.18
VPS13D-205ENST00000473099 COL5A3P25940 1745 aaPredicted RBP16.15■□□□□ 0.18
VPS13D-205ENST00000473099 PRIM1P49642 420 aaKnown RBP16.15■□□□□ 0.18
VPS13D-205ENST00000473099 MYT1Q01538 1121 aa16.15■□□□□ 0.18
VPS13D-205ENST00000473099 HDAC1Q13547 482 aaPredicted RBP16.15■□□□□ 0.18
VPS13D-205ENST00000473099 PDIA6Q15084 440 aa16.15■□□□□ 0.18
VPS13D-205ENST00000473099 SLC4A10Q6U841 1118 aa16.15■□□□□ 0.18
VPS13D-205ENST00000473099 DNAAF4Q8WXU2 420 aa16.15■□□□□ 0.18
VPS13D-205ENST00000473099 SMARCC1Q92922 1105 aaPredicted RBP16.15■□□□□ 0.18
VPS13D-205ENST00000473099 RREB1Q92766 1687 aa16.14■□□□□ 0.18
VPS13D-205ENST00000473099 ANKRD36CQ5JPF3 1778 aa16.14■□□□□ 0.17
VPS13D-205ENST00000473099 F6X3S4 739 aa16.14■□□□□ 0.17
VPS13D-205ENST00000473099 PTCD1O75127 700 aaKnown RBP16.14■□□□□ 0.17
VPS13D-205ENST00000473099 GNAI3P08754 354 aa16.14■□□□□ 0.17
VPS13D-205ENST00000473099 KSR2Q6VAB6 950 aa16.14■□□□□ 0.17
VPS13D-205ENST00000473099 SYTL4Q96C24 671 aaPredicted RBP16.14■□□□□ 0.17
VPS13D-205ENST00000473099 ASAP1Q9ULH1 1129 aa16.14■□□□□ 0.17
VPS13D-205ENST00000473099 PCDHB15Q9Y5E8 787 aa16.14■□□□□ 0.17
VPS13D-205ENST00000473099 EP400Q96L91 3159 aa16.13■□□□□ 0.17
VPS13D-205ENST00000473099 STARD3NLO95772 234 aa16.13■□□□□ 0.17
VPS13D-205ENST00000473099 SRCIN1Q9C0H9 1055 aa16.13■□□□□ 0.17
VPS13D-205ENST00000473099 LY75O60449 1722 aa16.13■□□□□ 0.17
VPS13D-205ENST00000473099 ADCY9O60503 1353 aa16.13■□□□□ 0.17
VPS13D-205ENST00000473099 PI4KAP2A4QPH2 592 aa16.12■□□□□ 0.17
VPS13D-205ENST00000473099 ALDH1L1O75891 902 aa16.12■□□□□ 0.17
VPS13D-205ENST00000473099 PROSER3Q2NL68 480 aa16.12■□□□□ 0.17
VPS13D-205ENST00000473099 PI4KAP1Q8N8J0 262 aa16.12■□□□□ 0.17
VPS13D-205ENST00000473099 HDAC5Q9UQL6 1122 aa16.12■□□□□ 0.17
VPS13D-205ENST00000473099 NUP98P52948 1817 aa16.11■□□□□ 0.17
VPS13D-205ENST00000473099 TAF1LQ8IZX4 1826 aa16.11■□□□□ 0.17
VPS13D-205ENST00000473099 ANXA1P04083 346 aa16.11■□□□□ 0.17
VPS13D-205ENST00000473099 RBM42Q9BTD8 480 aaKnown RBP16.11■□□□□ 0.17
VPS13D-205ENST00000473099 MYL6BP14649 208 aa16.1■□□□□ 0.17
VPS13D-205ENST00000473099 NEXNQ0ZGT2 675 aa16.1■□□□□ 0.17
VPS13D-205ENST00000473099 LRP10Q7Z4F1 713 aa16.1■□□□□ 0.17
VPS13D-205ENST00000473099 RPAP2Q8IXW5 612 aaPredicted RBP16.1■□□□□ 0.17
VPS13D-205ENST00000473099 MYH14Q7Z406 1995 aaKnown RBP16.09■□□□□ 0.17
VPS13D-205ENST00000473099 IGHDP01880 384 aa16.09■□□□□ 0.17
VPS13D-205ENST00000473099 BEND3Q5T5X7 828 aa16.09■□□□□ 0.17
VPS13D-205ENST00000473099 RIC3Q7Z5B4 369 aa16.09■□□□□ 0.17
VPS13D-205ENST00000473099 LINS1Q8NG48 757 aa16.09■□□□□ 0.17
VPS13D-205ENST00000473099 XAGE3Q8WTP9 111 aa16.09■□□□□ 0.17
VPS13D-205ENST00000473099 ACSBG1Q96GR2 724 aa16.09■□□□□ 0.17
VPS13D-205ENST00000473099 MAP3K2Q9Y2U5 619 aa16.09■□□□□ 0.17
VPS13D-205ENST00000473099 GNAI2P04899 355 aa16.08■□□□□ 0.16
VPS13D-205ENST00000473099 ANKRD13DQ6ZTN6 518 aa16.08■□□□□ 0.16
VPS13D-205ENST00000473099 COPS6Q7L5N1 327 aa16.08■□□□□ 0.16
VPS13D-205ENST00000473099 SEPT12Q8IYM1 358 aa16.08■□□□□ 0.16
VPS13D-205ENST00000473099 MEIS3Q99687 375 aa16.08■□□□□ 0.16
VPS13D-205ENST00000473099 PALLDQ8WX93 1383 aa16.08■□□□□ 0.16
VPS13D-205ENST00000473099 HMMRO75330 724 aa16.07■□□□□ 0.16
VPS13D-205ENST00000473099 AIMP1Q12904 312 aaKnown RBP16.07■□□□□ 0.16
VPS13D-205ENST00000473099 DNAJC10Q8IXB1 793 aa16.07■□□□□ 0.16
VPS13D-205ENST00000473099 ANKRD44Q8N8A2 993 aa16.07■□□□□ 0.16
VPS13D-205ENST00000473099 PLBD2Q8NHP8 589 aa16.07■□□□□ 0.16
VPS13D-205ENST00000473099 GCC1Q96CN9 775 aa16.07■□□□□ 0.16
VPS13D-205ENST00000473099 METTL22Q9BUU2 404 aaPredicted RBP16.07■□□□□ 0.16
VPS13D-205ENST00000473099 NBPF26B4DH59 902 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms