RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 TFIP11Q9UBB9 837 aaKnown RBP7.74□□□□□ -1.17
VPS13A-210ENST00000471439 ZNF777Q9ULD5 760 aaPredicted RBP7.74□□□□□ -1.17
VPS13A-210ENST00000471439 PEG3Q9GZU2 1588 aa7.73□□□□□ -1.17
VPS13A-210ENST00000471439 SMTNP53814 917 aa7.73□□□□□ -1.17
VPS13A-210ENST00000471439 TBCELQ5QJ74 424 aa7.73□□□□□ -1.17
VPS13A-210ENST00000471439 PPARGC1BQ86YN6 1023 aaKnown RBP7.73□□□□□ -1.17
VPS13A-210ENST00000471439 ZNF295-AS1Q8N0V1 137 aa7.73□□□□□ -1.17
VPS13A-210ENST00000471439 RHBDD1Q8TEB9 315 aa7.73□□□□□ -1.17
VPS13A-210ENST00000471439 GTPBP3Q969Y2 492 aaKnown RBP7.73□□□□□ -1.17
VPS13A-210ENST00000471439 CALR3Q96L12 384 aaKnown RBP7.73□□□□□ -1.17
VPS13A-210ENST00000471439 IQSEC3Q9UPP2 1182 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-210ENST00000471439 MAFBQ9Y5Q3 323 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-210ENST00000471439 PALM3A6NDB9 673 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-210ENST00000471439 ZBTB7BO15156 539 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-210ENST00000471439 GNASQ5JWF2 1037 aa7.72□□□□□ -1.17
VPS13A-210ENST00000471439 TRIM22Q8IYM9 498 aa7.72□□□□□ -1.17
VPS13A-210ENST00000471439 ZSCAN1Q8NBB4 408 aa7.72□□□□□ -1.17
VPS13A-210ENST00000471439 TPCN2Q8NHX9 752 aa7.72□□□□□ -1.17
VPS13A-210ENST00000471439 ZNF594Q96JF6 807 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-210ENST00000471439 ZMYND15Q9H091 742 aa7.72□□□□□ -1.17
VPS13A-210ENST00000471439 RUBCNLQ9H714 662 aa7.72□□□□□ -1.17
VPS13A-210ENST00000471439 MSX1P28360 303 aa7.71□□□□□ -1.18
VPS13A-210ENST00000471439 WHAMMQ8TF30 809 aa7.71□□□□□ -1.18
VPS13A-210ENST00000471439 MKRN1Q9UHC7 482 aaKnown RBP7.71□□□□□ -1.18
VPS13A-210ENST00000471439 PARP3Q9Y6F1 533 aa7.71□□□□□ -1.18
VPS13A-210ENST00000471439 A6NJY4 79 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 F11P03951 625 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 ATP4AP20648 1035 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 EPHA4P54764 986 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 MTFR1Q15390 333 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 WDR44Q5JSH3 913 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 TNS4Q8IZW8 715 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 OGFOD1Q8N543 542 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 SLC4A9Q96Q91 983 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 PPP1R12CQ9BZL4 782 aa7.7□□□□□ -1.18
VPS13A-210ENST00000471439 NUCKS1Q9H1E3 243 aaKnown RBP7.7□□□□□ -1.18
VPS13A-210ENST00000471439 PCF11O94913 1555 aaKnown RBP7.7□□□□□ -1.18
VPS13A-210ENST00000471439 SRCAPQ6ZRS2 3230 aa7.69□□□□□ -1.18
VPS13A-210ENST00000471439 A0A1B0GTH6 734 aa7.69□□□□□ -1.18
VPS13A-210ENST00000471439 SFI1A8K8P3 1242 aa7.69□□□□□ -1.18
VPS13A-210ENST00000471439 DKK1O94907 266 aa7.69□□□□□ -1.18
VPS13A-210ENST00000471439 SH3PXD2AQ5TCZ1 1133 aa7.69□□□□□ -1.18
VPS13A-210ENST00000471439 CHMP7Q8WUX9 453 aaPredicted RBP7.69□□□□□ -1.18
VPS13A-210ENST00000471439 FAM181BA6NEQ2 426 aa7.68□□□□□ -1.18
VPS13A-210ENST00000471439 LZTS3O60299 673 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-210ENST00000471439 LGR5O75473 907 aa7.68□□□□□ -1.18
VPS13A-210ENST00000471439 GTF2E1P29083 439 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-210ENST00000471439 UBAP2LQ14157 1087 aaKnown RBP7.68□□□□□ -1.18
VPS13A-210ENST00000471439 CRTC2Q53ET0 693 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-210ENST00000471439 CCDC102BQ68D86 513 aa7.68□□□□□ -1.18
VPS13A-210ENST00000471439 ZDHHC1Q8WTX9 485 aa7.68□□□□□ -1.18
VPS13A-210ENST00000471439 KLRG1Q96E93 195 aa7.68□□□□□ -1.18
VPS13A-210ENST00000471439 DNAAF2Q9NVR5 837 aaKnown RBP7.68□□□□□ -1.18
VPS13A-210ENST00000471439 SNAPC4Q5SXM2 1469 aa7.68□□□□□ -1.18
VPS13A-210ENST00000471439 CFAP70Q5T0N1 1121 aa7.67□□□□□ -1.18
VPS13A-210ENST00000471439 TRIM50Q86XT4 487 aa7.67□□□□□ -1.18
VPS13A-210ENST00000471439 TSEN2Q8NCE0 465 aaKnown RBP7.67□□□□□ -1.18
VPS13A-210ENST00000471439 AIDAQ96BJ3 306 aa7.67□□□□□ -1.18
VPS13A-210ENST00000471439 SCHIP1Q9P0W5 487 aaPredicted RBP7.67□□□□□ -1.18
VPS13A-210ENST00000471439 LMOD1P29536 600 aaPredicted RBP7.66□□□□□ -1.18
VPS13A-210ENST00000471439 TXLNAP40222 546 aa7.66□□□□□ -1.18
VPS13A-210ENST00000471439 FOXK2Q01167 660 aa7.66□□□□□ -1.18
VPS13A-210ENST00000471439 KANK4Q5T7N3 995 aaPredicted RBP7.66□□□□□ -1.18
VPS13A-210ENST00000471439 ZNF385CQ66K41 422 aaPredicted RBP7.66□□□□□ -1.18
VPS13A-210ENST00000471439 SLC9A9Q8IVB4 645 aa7.66□□□□□ -1.18
VPS13A-210ENST00000471439 GAS2L2Q8NHY3 880 aa7.66□□□□□ -1.18
VPS13A-210ENST00000471439 NIFKQ9BYG3 293 aaKnown RBP7.66□□□□□ -1.18
VPS13A-210ENST00000471439 TSPAN10Q9H1Z9 355 aaPredicted RBP7.66□□□□□ -1.18
VPS13A-210ENST00000471439 CABP1Q9NZU7 370 aa7.66□□□□□ -1.18
VPS13A-210ENST00000471439 TARBP1Q13395 1621 aaKnown RBP7.66□□□□□ -1.18
VPS13A-210ENST00000471439 H7C1W4 665 aa7.65□□□□□ -1.18
VPS13A-210ENST00000471439 CDK2AP1O14519 115 aa7.65□□□□□ -1.18
VPS13A-210ENST00000471439 MAPKBP1O60336 1514 aa7.65□□□□□ -1.18
VPS13A-210ENST00000471439 ADAMTS2O95450 1211 aa7.65□□□□□ -1.18
VPS13A-210ENST00000471439 RASA1P20936 1047 aa7.65□□□□□ -1.18
VPS13A-210ENST00000471439 ATP1A2P50993 1020 aa7.65□□□□□ -1.18
VPS13A-210ENST00000471439 MED1Q15648 1581 aaPredicted RBP7.65□□□□□ -1.18
VPS13A-210ENST00000471439 SIX5Q8N196 739 aa7.65□□□□□ -1.18
VPS13A-210ENST00000471439 C1orf115Q9H7X2 142 aa7.65□□□□□ -1.18
VPS13A-210ENST00000471439 HCN2Q9UL51 889 aa7.65□□□□□ -1.18
VPS13A-210ENST00000471439 COL17A1Q9UMD9 1497 aaPredicted RBP7.65□□□□□ -1.18
VPS13A-210ENST00000471439 CFTRP13569 1480 aa7.64□□□□□ -1.19
VPS13A-210ENST00000471439 ARID3CA6NKF2 412 aa7.64□□□□□ -1.19
VPS13A-210ENST00000471439 BACH1O14867 736 aa7.64□□□□□ -1.19
VPS13A-210ENST00000471439 SLURP2P0DP57 97 aa7.64□□□□□ -1.19
VPS13A-210ENST00000471439 HSPA2P54652 639 aa7.64□□□□□ -1.19
VPS13A-210ENST00000471439 CDCA8Q53HL2 280 aa7.64□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L15C9J2P7 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L10C9JJH3 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L13C9JLJ4 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L12C9JPN9 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L11C9JVI0 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L21D6R901 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L18D6R9N7 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L22D6RA61 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L17D6RBQ6 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L19D6RCP7 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L20D6RJB6 530 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 RFX1P22670 979 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 USP17L24Q0WX57 530 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 159.5 ms