RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 ANXA1P04083 346 aa12.81□□□□□ -0.36
SF3A1-207ENST00000471342 SMIM5Q71RC9 77 aa12.81□□□□□ -0.36
SF3A1-207ENST00000471342 RCAN3Q9UKA8 241 aa12.81□□□□□ -0.36
SF3A1-207ENST00000471342 PIP4K2AP48426 406 aaPredicted RBP12.8□□□□□ -0.36
SF3A1-207ENST00000471342 ALDH1L2Q3SY69 923 aa12.8□□□□□ -0.36
SF3A1-207ENST00000471342 SMARCC1Q92922 1105 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-207ENST00000471342 ZNF428Q96B54 188 aa12.79□□□□□ -0.36
SF3A1-207ENST00000471342 BCL2L13Q9BXK5 485 aa12.79□□□□□ -0.36
SF3A1-207ENST00000471342 PHAXQ9H814 394 aaKnown RBP12.79□□□□□ -0.36
SF3A1-207ENST00000471342 MYH14Q7Z406 1995 aaKnown RBP12.78□□□□□ -0.36
SF3A1-207ENST00000471342 RLBP1P12271 317 aa12.78□□□□□ -0.36
SF3A1-207ENST00000471342 EIF5P55010 431 aaKnown RBP12.78□□□□□ -0.36
SF3A1-207ENST00000471342 C20orf194Q5TEA3 1177 aa12.78□□□□□ -0.36
SF3A1-207ENST00000471342 UPF1Q92900 1129 aaKnown RBP eCLIP12.78□□□□□ -0.36
SF3A1-207ENST00000471342 CHPF2Q9P2E5 772 aa12.78□□□□□ -0.36
SF3A1-207ENST00000471342 ZBTB1Q9Y2K1 713 aa12.78□□□□□ -0.36
SF3A1-207ENST00000471342 COL5A3P25940 1745 aaPredicted RBP12.77□□□□□ -0.36
SF3A1-207ENST00000471342 PLIN1O60240 522 aa12.77□□□□□ -0.37
SF3A1-207ENST00000471342 TXNRD1Q16881 649 aa12.77□□□□□ -0.37
SF3A1-207ENST00000471342 HDGFL1Q5TGJ6 251 aa12.77□□□□□ -0.37
SF3A1-207ENST00000471342 DEFB132Q7Z7B7 95 aa12.77□□□□□ -0.37
SF3A1-207ENST00000471342 TTC5Q8N0Z6 440 aa12.77□□□□□ -0.37
SF3A1-207ENST00000471342 NECTIN2Q92692 538 aa12.77□□□□□ -0.37
SF3A1-207ENST00000471342 AKT1S1Q96B36 256 aa12.77□□□□□ -0.37
SF3A1-207ENST00000471342 RBM42Q9BTD8 480 aaKnown RBP12.77□□□□□ -0.37
SF3A1-207ENST00000471342 DDX21Q9NR30 783 aaKnown RBP eCLIP12.77□□□□□ -0.37
SF3A1-207ENST00000471342 APBA3O96018 575 aa12.76□□□□□ -0.37
SF3A1-207ENST00000471342 SLC4A2P04920 1241 aa12.76□□□□□ -0.37
SF3A1-207ENST00000471342 EIF2S2P20042 333 aaKnown RBP12.76□□□□□ -0.37
SF3A1-207ENST00000471342 ATP6V1AP38606 617 aa12.76□□□□□ -0.37
SF3A1-207ENST00000471342 CRKLP46109 303 aaKnown RBP12.76□□□□□ -0.37
SF3A1-207ENST00000471342 EZH2Q15910 746 aaKnown RBP12.76□□□□□ -0.37
SF3A1-207ENST00000471342 SUPT16HQ9Y5B9 1047 aaKnown RBP12.76□□□□□ -0.37
SF3A1-207ENST00000471342 CNTNAP4Q9C0A0 1308 aa12.76□□□□□ -0.37
SF3A1-207ENST00000471342 ADCY9O60503 1353 aa12.76□□□□□ -0.37
SF3A1-207ENST00000471342 LAMB4A4D0S4 1761 aa12.75□□□□□ -0.37
SF3A1-207ENST00000471342 ERBB4Q15303 1308 aa12.75□□□□□ -0.37
SF3A1-207ENST00000471342 ZNF827Q17R98 1081 aa12.75□□□□□ -0.37
SF3A1-207ENST00000471342 RC3H1Q5TC82 1133 aaKnown RBP12.75□□□□□ -0.37
SF3A1-207ENST00000471342 TTLL7Q6ZT98 887 aa12.75□□□□□ -0.37
SF3A1-207ENST00000471342 ANO8Q9HCE9 1232 aaPredicted RBP12.75□□□□□ -0.37
SF3A1-207ENST00000471342 NOB1Q9ULX3 412 aaKnown RBP12.75□□□□□ -0.37
SF3A1-207ENST00000471342 TRIM27P14373 513 aa12.74□□□□□ -0.37
SF3A1-207ENST00000471342 EN1Q05925 392 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-207ENST00000471342 SLC27A3Q5K4L6 730 aa12.74□□□□□ -0.37
SF3A1-207ENST00000471342 CCDC30Q5VVM6 783 aa12.74□□□□□ -0.37
SF3A1-207ENST00000471342 BCL2L12Q9HB09 334 aa12.74□□□□□ -0.37
SF3A1-207ENST00000471342 RGPD3A6NKT7 1758 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-207ENST00000471342 RGPD4Q7Z3J3 1758 aa12.74□□□□□ -0.37
SF3A1-207ENST00000471342 RRP1P56182 461 aaKnown RBP12.73□□□□□ -0.37
SF3A1-207ENST00000471342 ARHGAP45Q92619 1136 aa12.73□□□□□ -0.37
SF3A1-207ENST00000471342 TEX13AQ9BXU3 409 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-207ENST00000471342 CCDC87Q9NVE4 849 aa12.73□□□□□ -0.37
SF3A1-207ENST00000471342 DBF4Q9UBU7 674 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-207ENST00000471342 CCNL1Q9UK58 526 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-207ENST00000471342 TAF1LQ8IZX4 1826 aa12.72□□□□□ -0.37
SF3A1-207ENST00000471342 ABCC4O15439 1325 aa12.72□□□□□ -0.37
SF3A1-207ENST00000471342 RPS6KA4O75676 772 aa12.72□□□□□ -0.37
SF3A1-207ENST00000471342 FLIIQ13045 1269 aa12.72□□□□□ -0.37
SF3A1-207ENST00000471342 COPS6Q7L5N1 327 aa12.72□□□□□ -0.37
SF3A1-207ENST00000471342 C4BP0C0L5 1744 aa12.71□□□□□ -0.37
SF3A1-207ENST00000471342 F6X3S4 739 aa12.71□□□□□ -0.37
SF3A1-207ENST00000471342 IL6STP40189 918 aaPredicted RBP12.71□□□□□ -0.37
SF3A1-207ENST00000471342 XAGE3Q8WTP9 111 aa12.71□□□□□ -0.37
SF3A1-207ENST00000471342 SMC4Q9NTJ3 1288 aa12.71□□□□□ -0.37
SF3A1-207ENST00000471342 IGKV5-2P06315 115 aa12.7□□□□□ -0.38
SF3A1-207ENST00000471342 MYL6BP14649 208 aa12.7□□□□□ -0.38
SF3A1-207ENST00000471342 HLFQ16534 295 aa12.7□□□□□ -0.38
SF3A1-207ENST00000471342 CAMTA2O94983 1202 aa12.69□□□□□ -0.38
SF3A1-207ENST00000471342 STARD3NLO95772 234 aa12.69□□□□□ -0.38
SF3A1-207ENST00000471342 CANXP27824 592 aaKnown RBP12.69□□□□□ -0.38
SF3A1-207ENST00000471342 BEND3Q5T5X7 828 aa12.69□□□□□ -0.38
SF3A1-207ENST00000471342 ATF7IPQ6VMQ6 1270 aa12.69□□□□□ -0.38
SF3A1-207ENST00000471342 CCDC125Q86Z20 511 aa12.69□□□□□ -0.38
SF3A1-207ENST00000471342 PANK1Q8TE04 598 aa12.69□□□□□ -0.38
SF3A1-207ENST00000471342 PDGFDQ9GZP0 370 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-207ENST00000471342 HYPKQ9NX55 129 aa12.69□□□□□ -0.38
SF3A1-207ENST00000471342 PTPRCP08575 1304 aa12.68□□□□□ -0.38
SF3A1-207ENST00000471342 PI4KAP2A4QPH2 592 aa12.68□□□□□ -0.38
SF3A1-207ENST00000471342 INTS3Q68E01 1043 aaKnown RBP12.68□□□□□ -0.38
SF3A1-207ENST00000471342 PI4KAP1Q8N8J0 262 aa12.68□□□□□ -0.38
SF3A1-207ENST00000471342 ARHGEF1Q92888 912 aaKnown RBP12.68□□□□□ -0.38
SF3A1-207ENST00000471342 NUP188Q5SRE5 1749 aa12.68□□□□□ -0.38
SF3A1-207ENST00000471342 IBTKQ9P2D0 1353 aaPredicted RBP12.68□□□□□ -0.38
SF3A1-207ENST00000471342 PNPLA7Q6ZV29 1317 aa12.67□□□□□ -0.38
SF3A1-207ENST00000471342 CASP7P55210 303 aa12.67□□□□□ -0.38
SF3A1-207ENST00000471342 PDE3AQ14432 1141 aa12.67□□□□□ -0.38
SF3A1-207ENST00000471342 KSR2Q6VAB6 950 aa12.67□□□□□ -0.38
SF3A1-207ENST00000471342 ISCA1Q9BUE6 129 aa12.67□□□□□ -0.38
SF3A1-207ENST00000471342 UBR3Q6ZT12 1888 aa12.66□□□□□ -0.38
SF3A1-207ENST00000471342 ATP10DQ9P241 1426 aa12.66□□□□□ -0.38
SF3A1-207ENST00000471342 ZBTB7BO15156 539 aaPredicted RBP12.66□□□□□ -0.38
SF3A1-207ENST00000471342 CENPBP07199 599 aaPredicted RBP12.66□□□□□ -0.38
SF3A1-207ENST00000471342 ZKSCAN2Q63HK3 967 aa12.66□□□□□ -0.38
SF3A1-207ENST00000471342 COL23A1Q86Y22 540 aaPredicted RBP12.66□□□□□ -0.38
SF3A1-207ENST00000471342 TMEM57Q8N5G2 664 aa12.66□□□□□ -0.38
SF3A1-207ENST00000471342 PLBD2Q8NHP8 589 aa12.66□□□□□ -0.38
SF3A1-207ENST00000471342 SRP68Q9UHB9 627 aaKnown RBP12.66□□□□□ -0.38
SF3A1-207ENST00000471342 TBC1D2BQ9UPU7 963 aa12.66□□□□□ -0.38
SF3A1-207ENST00000471342 KAT6BQ8WYB5 2073 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms