RNA–Protein interactions for RNA: ENST00000470537.1

XRN1-208, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-208ENST00000470537 RTL1A6NKG5 1358 aa12.38□□□□□ -0.43
XRN1-208ENST00000470537 MSL1Q68DK7 614 aa12.37□□□□□ -0.43
XRN1-208ENST00000470537 KHSRPQ92945 711 aaKnown RBP eCLIP12.37□□□□□ -0.43
XRN1-208ENST00000470537 NSD2O96028 1365 aa12.37□□□□□ -0.43
XRN1-208ENST00000470537 SHANK3Q9BYB0 1731 aa12.37□□□□□ -0.43
XRN1-208ENST00000470537 NBPF6Q5VWK0 638 aa12.36□□□□□ -0.43
XRN1-208ENST00000470537 MPRIPQ6WCQ1 1025 aa12.36□□□□□ -0.43
XRN1-208ENST00000470537 NBPF4Q96M43 638 aa12.36□□□□□ -0.43
XRN1-208ENST00000470537 ZNF316A6NFI3 1004 aaPredicted RBP12.35□□□□□ -0.43
XRN1-208ENST00000470537 DOT1LQ8TEK3 1739 aa12.34□□□□□ -0.43
XRN1-208ENST00000470537 KIF24Q5T7B8 1368 aa12.34□□□□□ -0.43
XRN1-208ENST00000470537 PALLDQ8WX93 1383 aa12.34□□□□□ -0.43
XRN1-208ENST00000470537 C2orf72A6NCS6 295 aa12.34□□□□□ -0.43
XRN1-208ENST00000470537 SSFA2P28290 1259 aa12.34□□□□□ -0.43
XRN1-208ENST00000470537 CDCA8Q53HL2 280 aa12.34□□□□□ -0.43
XRN1-208ENST00000470537 ZNF526Q8TF50 670 aaPredicted RBP12.34□□□□□ -0.43
XRN1-208ENST00000470537 TONSLQ96HA7 1378 aa12.33□□□□□ -0.44
XRN1-208ENST00000470537 MEGF6O75095 1541 aa12.33□□□□□ -0.44
XRN1-208ENST00000470537 TUBGCP6Q96RT7 1819 aa12.33□□□□□ -0.44
XRN1-208ENST00000470537 APLP1P51693 650 aa12.33□□□□□ -0.44
XRN1-208ENST00000470537 SPG7Q9UQ90 795 aa12.33□□□□□ -0.44
XRN1-208ENST00000470537 IGSF1Q8N6C5 1336 aa12.33□□□□□ -0.44
XRN1-208ENST00000470537 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.32□□□□□ -0.44
XRN1-208ENST00000470537 KIF3CO14782 793 aa12.32□□□□□ -0.44
XRN1-208ENST00000470537 FYB1O15117 783 aa12.32□□□□□ -0.44
XRN1-208ENST00000470537 RGL2O15211 777 aa12.32□□□□□ -0.44
XRN1-208ENST00000470537 RRS1Q15050 365 aaKnown RBP12.32□□□□□ -0.44
XRN1-208ENST00000470537 ADCY9O60503 1353 aa12.31□□□□□ -0.44
XRN1-208ENST00000470537 INSRP06213 1382 aa12.31□□□□□ -0.44
XRN1-208ENST00000470537 ST20-MTHFSA0A0A6YYL1 179 aa12.31□□□□□ -0.44
XRN1-208ENST00000470537 TMF1P82094 1093 aa12.31□□□□□ -0.44
XRN1-208ENST00000470537 ANKRD13DQ6ZTN6 518 aa12.31□□□□□ -0.44
XRN1-208ENST00000470537 FLT4P35916 1363 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 C5P01031 1676 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 TOMM70O94826 608 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 PHF14O94880 888 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 FBLN1P23142 703 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 TGFB2P61812 414 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 HSP90AB2PQ58FF8 381 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 USHBP1Q8N6Y0 703 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 TESK2Q96S53 571 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 GGNBP2Q9H3C7 697 aa12.3□□□□□ -0.44
XRN1-208ENST00000470537 LOC102724428A0A0B4J2F2 783 aa12.29□□□□□ -0.44
XRN1-208ENST00000470537 CYP27B1O15528 508 aa12.29□□□□□ -0.44
XRN1-208ENST00000470537 SIK1P57059 783 aa12.29□□□□□ -0.44
XRN1-208ENST00000470537 NKX1-1Q15270 411 aaPredicted RBP12.29□□□□□ -0.44
XRN1-208ENST00000470537 NLGN1Q8N2Q7 840 aa12.29□□□□□ -0.44
XRN1-208ENST00000470537 TMOD3Q9NYL9 352 aa12.29□□□□□ -0.44
XRN1-208ENST00000470537 NUDT7P0C024 238 aa12.28□□□□□ -0.44
XRN1-208ENST00000470537 TMC2Q8TDI7 906 aa12.28□□□□□ -0.44
XRN1-208ENST00000470537 PIGBQ92521 554 aa12.28□□□□□ -0.44
XRN1-208ENST00000470537 ATP6V1AP38606 617 aa12.27□□□□□ -0.45
XRN1-208ENST00000470537 TRAPPC3LQ5T215 181 aa12.27□□□□□ -0.45
XRN1-208ENST00000470537 C16orf71Q8IYS4 520 aaPredicted RBP12.27□□□□□ -0.45
XRN1-208ENST00000470537 C4BP0C0L5 1744 aa12.27□□□□□ -0.45
XRN1-208ENST00000470537 RGPD2P0DJD1 1756 aa12.27□□□□□ -0.45
XRN1-208ENST00000470537 TAF1LQ8IZX4 1826 aa12.26□□□□□ -0.45
XRN1-208ENST00000470537 GNPATO15228 680 aa12.26□□□□□ -0.45
XRN1-208ENST00000470537 LSM11P83369 360 aaKnown RBP eCLIP12.26□□□□□ -0.45
XRN1-208ENST00000470537 IFNL2Q8IZJ0 200 aa12.26□□□□□ -0.45
XRN1-208ENST00000470537 RTCBQ9Y3I0 505 aaKnown RBP12.26□□□□□ -0.45
XRN1-208ENST00000470537 PPM1GO15355 546 aaPredicted RBP12.25□□□□□ -0.45
XRN1-208ENST00000470537 MMP10P09238 476 aa12.25□□□□□ -0.45
XRN1-208ENST00000470537 ARHGAP27Q6ZUM4 889 aa12.25□□□□□ -0.45
XRN1-208ENST00000470537 BCS1LQ9Y276 419 aa12.25□□□□□ -0.45
XRN1-208ENST00000470537 CCDC87Q9NVE4 849 aa12.24□□□□□ -0.45
XRN1-208ENST00000470537 WWC3Q9ULE0 1092 aa12.24□□□□□ -0.45
XRN1-208ENST00000470537 PCDHGA4Q9Y5G9 962 aa12.24□□□□□ -0.45
XRN1-208ENST00000470537 HSP90AB1P08238 724 aaKnown RBP12.23□□□□□ -0.45
XRN1-208ENST00000470537 RFC4P35249 363 aa12.23□□□□□ -0.45
XRN1-208ENST00000470537 LINC00116Q8NCU8 138 aa12.23□□□□□ -0.45
XRN1-208ENST00000470537 PARP3Q9Y6F1 533 aa12.23□□□□□ -0.45
XRN1-208ENST00000470537 WASHC2AQ641Q2 1341 aa12.22□□□□□ -0.45
XRN1-208ENST00000470537 KDM2BQ8NHM5 1336 aa12.22□□□□□ -0.45
XRN1-208ENST00000470537 FCHSD2O94868 740 aa12.22□□□□□ -0.45
XRN1-208ENST00000470537 SLC34A2O95436 690 aa12.22□□□□□ -0.45
XRN1-208ENST00000470537 RC3H1Q5TC82 1133 aaKnown RBP12.22□□□□□ -0.45
XRN1-208ENST00000470537 RBM46Q8TBY0 533 aaKnown RBP12.22□□□□□ -0.45
XRN1-208ENST00000470537 ASAP1Q9ULH1 1129 aa12.22□□□□□ -0.45
XRN1-208ENST00000470537 UBR3Q6ZT12 1888 aa12.22□□□□□ -0.45
XRN1-208ENST00000470537 PLEKHG2Q9H7P9 1386 aa12.21□□□□□ -0.45
XRN1-208ENST00000470537 ITGB4P16144 1822 aa12.21□□□□□ -0.45
XRN1-208ENST00000470537 A0A0G2JLW4 131 aa12.21□□□□□ -0.45
XRN1-208ENST00000470537 ERVV-2B6SEH9 535 aa12.21□□□□□ -0.45
XRN1-208ENST00000470537 PBX2P40425 430 aa12.21□□□□□ -0.45
XRN1-208ENST00000470537 FSTL1Q12841 308 aa12.21□□□□□ -0.45
XRN1-208ENST00000470537 AMIGO3Q86WK7 504 aa12.21□□□□□ -0.45
XRN1-208ENST00000470537 DNAJC5GQ8N7S2 189 aa12.21□□□□□ -0.45
XRN1-208ENST00000470537 LHX6Q9UPM6 363 aa12.21□□□□□ -0.45
XRN1-208ENST00000470537 PHKG2P15735 406 aa12.2□□□□□ -0.46
XRN1-208ENST00000470537 ATG3Q9NT62 314 aa12.2□□□□□ -0.46
XRN1-208ENST00000470537 PIM2Q9P1W9 311 aa12.2□□□□□ -0.46
XRN1-208ENST00000470537 PPP1R37O75864 691 aa12.19□□□□□ -0.46
XRN1-208ENST00000470537 ITPK1Q13572 414 aa12.19□□□□□ -0.46
XRN1-208ENST00000470537 DCAF5Q96JK2 942 aa12.19□□□□□ -0.46
XRN1-208ENST00000470537 EYA1Q99502 592 aa12.19□□□□□ -0.46
XRN1-208ENST00000470537 EMILIN1Q9Y6C2 1016 aa12.19□□□□□ -0.46
XRN1-208ENST00000470537 RPS6KA4O75676 772 aa12.18□□□□□ -0.46
XRN1-208ENST00000470537 PLEKHO1Q53GL0 409 aaPredicted RBP12.18□□□□□ -0.46
XRN1-208ENST00000470537 SMIM5Q71RC9 77 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms