RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 SOS2Q07890 1332 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-219ENST00000469439 ERBB4Q15303 1308 aa8.33□□□□□ -1.08
SYNE1-219ENST00000469439 KDM6BO15054 1643 aa8.33□□□□□ -1.08
SYNE1-219ENST00000469439 TSPOAP1O95153 1857 aa8.33□□□□□ -1.08
SYNE1-219ENST00000469439 INTS6LQ5JSJ4 861 aaKnown RBP8.33□□□□□ -1.08
SYNE1-219ENST00000469439 TSEN34Q9BSV6 310 aaKnown RBP8.33□□□□□ -1.08
SYNE1-219ENST00000469439 PGPEP1Q9NXJ5 209 aa8.33□□□□□ -1.08
SYNE1-219ENST00000469439 DHX57Q6P158 1386 aaKnown RBP8.33□□□□□ -1.08
SYNE1-219ENST00000469439 MAN1A2O60476 641 aa8.32□□□□□ -1.08
SYNE1-219ENST00000469439 GMPRP36959 345 aa8.32□□□□□ -1.08
SYNE1-219ENST00000469439 BRPF1P55201 1214 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-219ENST00000469439 Q6ZVU0 165 aa8.32□□□□□ -1.08
SYNE1-219ENST00000469439 TRIM34Q9BYJ4 488 aa8.32□□□□□ -1.08
SYNE1-219ENST00000469439 STK17AQ9UEE5 414 aa8.32□□□□□ -1.08
SYNE1-219ENST00000469439 KDM5DQ9BY66 1539 aa8.32□□□□□ -1.08
SYNE1-219ENST00000469439 RPRD2Q5VT52 1461 aaKnown RBP8.32□□□□□ -1.08
SYNE1-219ENST00000469439 RICTORQ6R327 1708 aa8.32□□□□□ -1.08
SYNE1-219ENST00000469439 DHX9Q08211 1270 aaKnown RBP8.31□□□□□ -1.08
SYNE1-219ENST00000469439 CBLBQ13191 982 aa8.31□□□□□ -1.08
SYNE1-219ENST00000469439 TMEM259Q4ZIN3 620 aa8.31□□□□□ -1.08
SYNE1-219ENST00000469439 SLC52A1Q9NWF4 448 aa8.31□□□□□ -1.08
SYNE1-219ENST00000469439 DNMT3LQ9UJW3 386 aa8.31□□□□□ -1.08
SYNE1-219ENST00000469439 PPRC1Q5VV67 1664 aaKnown RBP8.3□□□□□ -1.08
SYNE1-219ENST00000469439 KIDINS220Q9ULH0 1771 aa8.3□□□□□ -1.08
SYNE1-219ENST00000469439 VSIG8P0DPA2 414 aa8.3□□□□□ -1.08
SYNE1-219ENST00000469439 NBPF20Q3BBV1 942 aa8.3□□□□□ -1.08
SYNE1-219ENST00000469439 IL27Q8NEV9 243 aa8.3□□□□□ -1.08
SYNE1-219ENST00000469439 TONSLQ96HA7 1378 aa8.3□□□□□ -1.08
SYNE1-219ENST00000469439 ARHGEF40Q8TER5 1519 aa8.29□□□□□ -1.08
SYNE1-219ENST00000469439 TPRNQ4KMQ1 711 aa8.29□□□□□ -1.08
SYNE1-219ENST00000469439 GJD4Q96KN9 370 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-219ENST00000469439 LMTK2Q8IWU2 1503 aa8.29□□□□□ -1.08
SYNE1-219ENST00000469439 CCDC144AA2RUR9 1427 aa8.29□□□□□ -1.08
SYNE1-219ENST00000469439 ARHGAP31Q2M1Z3 1444 aa8.29□□□□□ -1.08
SYNE1-219ENST00000469439 YEATS2Q9ULM3 1422 aa8.29□□□□□ -1.08
SYNE1-219ENST00000469439 DIP2CQ9Y2E4 1556 aa8.28□□□□□ -1.08
SYNE1-219ENST00000469439 SPINT1O43278 529 aa8.28□□□□□ -1.08
SYNE1-219ENST00000469439 BCORL1Q5H9F3 1711 aa8.28□□□□□ -1.08
SYNE1-219ENST00000469439 PRDM15P57071 1507 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-219ENST00000469439 UNC13BO14795 1591 aa8.27□□□□□ -1.09
SYNE1-219ENST00000469439 COL17A1Q9UMD9 1497 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-219ENST00000469439 TTLL8A6PVC2 850 aa8.27□□□□□ -1.09
SYNE1-219ENST00000469439 LORP23490 312 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-219ENST00000469439 FRMPD1Q5SYB0 1578 aa8.27□□□□□ -1.09
SYNE1-219ENST00000469439 ANKRD30BQ9BXX2 1392 aa8.26□□□□□ -1.09
SYNE1-219ENST00000469439 ESPNB1AK53 854 aa8.26□□□□□ -1.09
SYNE1-219ENST00000469439 PPFIA3O75145 1194 aa8.26□□□□□ -1.09
SYNE1-219ENST00000469439 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.26□□□□□ -1.09
SYNE1-219ENST00000469439 DZIP3Q86Y13 1208 aaKnown RBP8.26□□□□□ -1.09
SYNE1-219ENST00000469439 RPGRIP1LQ68CZ1 1315 aa8.26□□□□□ -1.09
SYNE1-219ENST00000469439 IQGAP3Q86VI3 1631 aa8.25□□□□□ -1.09
SYNE1-219ENST00000469439 RNF17Q9BXT8 1623 aaKnown RBP8.25□□□□□ -1.09
SYNE1-219ENST00000469439 ZC3H13Q5T200 1668 aaKnown RBP8.25□□□□□ -1.09
SYNE1-219ENST00000469439 NEUROD1Q13562 356 aa8.25□□□□□ -1.09
SYNE1-219ENST00000469439 TMPRSS4Q9NRS4 437 aa8.25□□□□□ -1.09
SYNE1-219ENST00000469439 PZPP20742 1482 aa8.25□□□□□ -1.09
SYNE1-219ENST00000469439 DEPDC5O75140 1603 aa8.25□□□□□ -1.09
SYNE1-219ENST00000469439 ABCA6Q8N139 1617 aa8.25□□□□□ -1.09
SYNE1-219ENST00000469439 ERVH48-1M5A8F1 160 aa8.24□□□□□ -1.09
SYNE1-219ENST00000469439 MLECQ14165 292 aa8.24□□□□□ -1.09
SYNE1-219ENST00000469439 ZNF784Q8NCA9 323 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-219ENST00000469439 AGBL1Q96MI9 1066 aa8.24□□□□□ -1.09
SYNE1-219ENST00000469439 VWDEQ8N2E2 1590 aa8.23□□□□□ -1.09
SYNE1-219ENST00000469439 ZBBXA8MT70 800 aa8.23□□□□□ -1.09
SYNE1-219ENST00000469439 SOCS7O14512 581 aa8.23□□□□□ -1.09
SYNE1-219ENST00000469439 LILRA1O75019 489 aa8.23□□□□□ -1.09
SYNE1-219ENST00000469439 RAB15P59190 212 aa8.23□□□□□ -1.09
SYNE1-219ENST00000469439 ZSCAN1Q8NBB4 408 aa8.23□□□□□ -1.09
SYNE1-219ENST00000469439 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.23□□□□□ -1.09
SYNE1-219ENST00000469439 TET3O43151 1660 aa8.23□□□□□ -1.09
SYNE1-219ENST00000469439 ZMYM3Q14202 1370 aa8.22□□□□□ -1.09
SYNE1-219ENST00000469439 PTPRTO14522 1441 aa8.22□□□□□ -1.09
SYNE1-219ENST00000469439 ADH1AP07327 375 aa8.22□□□□□ -1.09
SYNE1-219ENST00000469439 FBXO45P0C2W1 286 aa8.22□□□□□ -1.09
SYNE1-219ENST00000469439 RELBQ01201 579 aa8.22□□□□□ -1.09
SYNE1-219ENST00000469439 PTSQ03393 145 aa8.22□□□□□ -1.09
SYNE1-219ENST00000469439 SEPT12Q8IYM1 358 aa8.22□□□□□ -1.09
SYNE1-219ENST00000469439 ABCC3O15438 1527 aa8.21□□□□□ -1.1
SYNE1-219ENST00000469439 EFCAB6Q5THR3 1501 aa8.21□□□□□ -1.1
SYNE1-219ENST00000469439 FIGNL2A6NMB9 653 aa8.21□□□□□ -1.1
SYNE1-219ENST00000469439 CTSOP43234 321 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-219ENST00000469439 BANK1Q8NDB2 785 aa8.21□□□□□ -1.1
SYNE1-219ENST00000469439 NPATQ14207 1427 aa8.2□□□□□ -1.1
SYNE1-219ENST00000469439 GPR37L1O60883 481 aa8.2□□□□□ -1.1
SYNE1-219ENST00000469439 INSM2Q96T92 566 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-219ENST00000469439 FAM181BA6NEQ2 426 aa8.19□□□□□ -1.1
SYNE1-219ENST00000469439 PPP1R15AO75807 674 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-219ENST00000469439 ADD1P35611 737 aaKnown RBP8.19□□□□□ -1.1
SYNE1-219ENST00000469439 ZNF326Q5BKZ1 582 aaKnown RBP8.19□□□□□ -1.1
SYNE1-219ENST00000469439 THEMISQ8N1K5 641 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-219ENST00000469439 KDF1Q8NAX2 398 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-219ENST00000469439 MTMR14Q8NCE2 650 aa8.19□□□□□ -1.1
SYNE1-219ENST00000469439 RNF217Q8TC41 542 aa8.19□□□□□ -1.1
SYNE1-219ENST00000469439 PCDHB9Q9Y5E1 797 aa8.19□□□□□ -1.1
SYNE1-219ENST00000469439 EID1Q9Y6B2 187 aa8.19□□□□□ -1.1
SYNE1-219ENST00000469439 NOS1P29475 1434 aa8.19□□□□□ -1.1
SYNE1-219ENST00000469439 TRPM2O94759 1503 aa8.19□□□□□ -1.1
SYNE1-219ENST00000469439 NEURL4Q96JN8 1562 aa8.18□□□□□ -1.1
SYNE1-219ENST00000469439 FOXD4L5Q5VV16 416 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-219ENST00000469439 SIN3AQ96ST3 1273 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms