RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 RXRBP28702 533 aa13.75□□□□□ -0.21
MSX1-202ENST00000468421 ATF7IPQ6VMQ6 1270 aa13.75□□□□□ -0.21
MSX1-202ENST00000468421 KRT27Q7Z3Y8 459 aa13.75□□□□□ -0.21
MSX1-202ENST00000468421 PANK1Q8TE04 598 aa13.75□□□□□ -0.21
MSX1-202ENST00000468421 CRBNQ96SW2 442 aa13.75□□□□□ -0.21
MSX1-202ENST00000468421 STK31Q9BXU1 1019 aa13.75□□□□□ -0.21
MSX1-202ENST00000468421 CHPF2Q9P2E5 772 aa13.75□□□□□ -0.21
MSX1-202ENST00000468421 USP16Q9Y5T5 823 aa13.75□□□□□ -0.21
MSX1-202ENST00000468421 ANXA1P04083 346 aa13.74□□□□□ -0.21
MSX1-202ENST00000468421 PROSER3Q2NL68 480 aa13.74□□□□□ -0.21
MSX1-202ENST00000468421 EXOC6Q8TAG9 804 aa13.74□□□□□ -0.21
MSX1-202ENST00000468421 CLUAP1Q96AJ1 413 aa13.74□□□□□ -0.21
MSX1-202ENST00000468421 SLC4A9Q96Q91 983 aa13.74□□□□□ -0.21
MSX1-202ENST00000468421 RREB1Q92766 1687 aa13.74□□□□□ -0.21
MSX1-202ENST00000468421 PALLDQ8WX93 1383 aa13.73□□□□□ -0.21
MSX1-202ENST00000468421 PDE3AQ14432 1141 aa13.73□□□□□ -0.21
MSX1-202ENST00000468421 ARHGAP45Q92619 1136 aa13.73□□□□□ -0.21
MSX1-202ENST00000468421 RBM42Q9BTD8 480 aaKnown RBP13.73□□□□□ -0.21
MSX1-202ENST00000468421 TAF1LQ8IZX4 1826 aa13.73□□□□□ -0.21
MSX1-202ENST00000468421 IPO8O15397 1037 aaKnown RBP13.72□□□□□ -0.21
MSX1-202ENST00000468421 FLIIQ13045 1269 aa13.72□□□□□ -0.21
MSX1-202ENST00000468421 PDIA6Q15084 440 aa13.72□□□□□ -0.21
MSX1-202ENST00000468421 DNAJC10Q8IXB1 793 aa13.72□□□□□ -0.21
MSX1-202ENST00000468421 DZIP1LQ8IYY4 767 aaKnown RBP13.72□□□□□ -0.21
MSX1-202ENST00000468421 PHAXQ9H814 394 aaKnown RBP13.72□□□□□ -0.21
MSX1-202ENST00000468421 ARFGEF2Q9Y6D5 1785 aa13.72□□□□□ -0.21
MSX1-202ENST00000468421 NUP188Q5SRE5 1749 aa13.72□□□□□ -0.21
MSX1-202ENST00000468421 TNS1Q9HBL0 1735 aaKnown RBP13.72□□□□□ -0.21
MSX1-202ENST00000468421 ABCC4O15439 1325 aa13.71□□□□□ -0.21
MSX1-202ENST00000468421 PTPRCP08575 1304 aa13.71□□□□□ -0.21
MSX1-202ENST00000468421 PIP4K2AP48426 406 aaPredicted RBP13.71□□□□□ -0.21
MSX1-202ENST00000468421 VSIG10Q8N0Z9 540 aa13.71□□□□□ -0.21
MSX1-202ENST00000468421 DBF4Q9UBU7 674 aaPredicted RBP13.71□□□□□ -0.21
MSX1-202ENST00000468421 COG6Q9Y2V7 657 aa13.71□□□□□ -0.21
MSX1-202ENST00000468421 MYH14Q7Z406 1995 aaKnown RBP13.71□□□□□ -0.22
MSX1-202ENST00000468421 FAM196AQ6ZSG2 479 aa13.7□□□□□ -0.22
MSX1-202ENST00000468421 LRP10Q7Z4F1 713 aa13.7□□□□□ -0.22
MSX1-202ENST00000468421 FTSJ3Q8IY81 847 aaKnown RBP13.7□□□□□ -0.22
MSX1-202ENST00000468421 TMEM57Q8N5G2 664 aa13.7□□□□□ -0.22
MSX1-202ENST00000468421 CHMP4AQ9BY43 222 aa13.7□□□□□ -0.22
MSX1-202ENST00000468421 API5Q9BZZ5 524 aaKnown RBP13.7□□□□□ -0.22
MSX1-202ENST00000468421 DDX21Q9NR30 783 aaKnown RBP eCLIP13.7□□□□□ -0.22
MSX1-202ENST00000468421 NBPF26B4DH59 902 aa13.69□□□□□ -0.22
MSX1-202ENST00000468421 NBPF14Q5TI25 921 aa13.69□□□□□ -0.22
MSX1-202ENST00000468421 ERICH6BQ5W0A0 696 aa13.69□□□□□ -0.22
MSX1-202ENST00000468421 NBPF10Q6P3W6 841 aaKnown RBP13.69□□□□□ -0.22
MSX1-202ENST00000468421 NBPF15Q8N660 670 aa13.69□□□□□ -0.22
MSX1-202ENST00000468421 SMARCC1Q92922 1105 aaPredicted RBP13.69□□□□□ -0.22
MSX1-202ENST00000468421 PXDNLA1KZ92 1463 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 ERBB4Q15303 1308 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 LOC102724428A0A0B4J2F2 783 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 F6X3S4 739 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 A1BGP04217 495 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 MS4A1P11836 297 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 MYL6BP14649 208 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 SIK1P57059 783 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 FKBP5Q13451 457 aaPredicted RBP13.68□□□□□ -0.22
MSX1-202ENST00000468421 ITPK1Q13572 414 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 MVPQ14764 893 aaKnown RBP13.68□□□□□ -0.22
MSX1-202ENST00000468421 AFDNP55196 1824 aaKnown RBP13.68□□□□□ -0.22
MSX1-202ENST00000468421 ADCY9O60503 1353 aa13.68□□□□□ -0.22
MSX1-202ENST00000468421 SRCAPQ6ZRS2 3230 aa13.67□□□□□ -0.22
MSX1-202ENST00000468421 CYP19A1P11511 503 aaPredicted RBP13.67□□□□□ -0.22
MSX1-202ENST00000468421 TEX13AQ9BXU3 409 aaPredicted RBP13.67□□□□□ -0.22
MSX1-202ENST00000468421 BCL11BQ9C0K0 894 aaPredicted RBP13.67□□□□□ -0.22
MSX1-202ENST00000468421 HYPKQ9NX55 129 aa13.67□□□□□ -0.22
MSX1-202ENST00000468421 TRIM37O94972 964 aa13.66□□□□□ -0.22
MSX1-202ENST00000468421 ATP6V1AP38606 617 aa13.66□□□□□ -0.22
MSX1-202ENST00000468421 ITPRIPQ8IWB1 547 aa13.66□□□□□ -0.22
MSX1-202ENST00000468421 XAGE3Q8WTP9 111 aa13.66□□□□□ -0.22
MSX1-202ENST00000468421 STARD3NLO95772 234 aa13.65□□□□□ -0.22
MSX1-202ENST00000468421 AIMP1Q12904 312 aaKnown RBP13.65□□□□□ -0.22
MSX1-202ENST00000468421 ZBTB1Q9Y2K1 713 aa13.65□□□□□ -0.22
MSX1-202ENST00000468421 ANKRD36CQ5JPF3 1778 aa13.65□□□□□ -0.22
MSX1-202ENST00000468421 C4BP0C0L5 1744 aa13.64□□□□□ -0.23
MSX1-202ENST00000468421 RGPD3A6NKT7 1758 aaPredicted RBP13.64□□□□□ -0.23
MSX1-202ENST00000468421 BCORQ6W2J9 1755 aa13.64□□□□□ -0.23
MSX1-202ENST00000468421 RGPD4Q7Z3J3 1758 aa13.64□□□□□ -0.23
MSX1-202ENST00000468421 KCNQ4P56696 695 aa13.64□□□□□ -0.23
MSX1-202ENST00000468421 INTS3Q68E01 1043 aaKnown RBP13.64□□□□□ -0.23
MSX1-202ENST00000468421 SLC4A10Q6U841 1118 aa13.64□□□□□ -0.23
MSX1-202ENST00000468421 COPS6Q7L5N1 327 aa13.64□□□□□ -0.23
MSX1-202ENST00000468421 PPP4R2Q9NY27 417 aa13.64□□□□□ -0.23
MSX1-202ENST00000468421 NUP98P52948 1817 aa13.63□□□□□ -0.23
MSX1-202ENST00000468421 PI4KAP2A4QPH2 592 aa13.63□□□□□ -0.23
MSX1-202ENST00000468421 PI4KAP1Q8N8J0 262 aa13.63□□□□□ -0.23
MSX1-202ENST00000468421 LINC00116Q8NCU8 138 aa13.63□□□□□ -0.23
MSX1-202ENST00000468421 DNAAF4Q8WXU2 420 aa13.63□□□□□ -0.23
MSX1-202ENST00000468421 DDX19BQ9UMR2 479 aa13.63□□□□□ -0.23
MSX1-202ENST00000468421 ATP10DQ9P241 1426 aa13.63□□□□□ -0.23
MSX1-202ENST00000468421 CRKLP46109 303 aaKnown RBP13.62□□□□□ -0.23
MSX1-202ENST00000468421 INTS5Q6P9B9 1019 aaKnown RBP13.62□□□□□ -0.23
MSX1-202ENST00000468421 KSR2Q6VAB6 950 aa13.62□□□□□ -0.23
MSX1-202ENST00000468421 TTLL7Q6ZT98 887 aa13.62□□□□□ -0.23
MSX1-202ENST00000468421 CCDC87Q9NVE4 849 aa13.62□□□□□ -0.23
MSX1-202ENST00000468421 MAP3K2Q9Y2U5 619 aa13.62□□□□□ -0.23
MSX1-202ENST00000468421 C4AP0C0L4 1744 aa13.61□□□□□ -0.23
MSX1-202ENST00000468421 UBR3Q6ZT12 1888 aa13.61□□□□□ -0.23
MSX1-202ENST00000468421 B4GALNT3Q6L9W6 998 aa13.61□□□□□ -0.23
MSX1-202ENST00000468421 CCNL1Q9UK58 526 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms