RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 PCDHB8Q9UN66 801 aa7.75□□□□□ -1.17
USP39-213ENST00000467885 PCDH11XQ9BZA7 1347 aa7.75□□□□□ -1.17
USP39-213ENST00000467885 PCDH11YQ9BZA8 1340 aa7.75□□□□□ -1.17
USP39-213ENST00000467885 RGPD2P0DJD1 1756 aa7.74□□□□□ -1.17
USP39-213ENST00000467885 FAM208AQ9UK61 1670 aaKnown RBP7.74□□□□□ -1.17
USP39-213ENST00000467885 BTBD11A6QL63 1104 aa7.74□□□□□ -1.17
USP39-213ENST00000467885 KCNQ2O43526 872 aa7.74□□□□□ -1.17
USP39-213ENST00000467885 EIF4A1P60842 406 aaKnown RBP7.74□□□□□ -1.17
USP39-213ENST00000467885 TEFQ10587 303 aa7.74□□□□□ -1.17
USP39-213ENST00000467885 SLC39A6Q13433 755 aa7.74□□□□□ -1.17
USP39-213ENST00000467885 PTF1AQ7RTS3 328 aa7.74□□□□□ -1.17
USP39-213ENST00000467885 MYH16Q9H6N6 1097 aa7.74□□□□□ -1.17
USP39-213ENST00000467885 KDM6AO15550 1401 aaPredicted RBP7.73□□□□□ -1.17
USP39-213ENST00000467885 ELL2O00472 640 aaPredicted RBP7.73□□□□□ -1.17
USP39-213ENST00000467885 KRT24Q2M2I5 525 aa7.73□□□□□ -1.17
USP39-213ENST00000467885 ZNF790Q6PG37 636 aa7.73□□□□□ -1.17
USP39-213ENST00000467885 ATG3Q9NT62 314 aa7.73□□□□□ -1.17
USP39-213ENST00000467885 ASAP1Q9ULH1 1129 aa7.73□□□□□ -1.17
USP39-213ENST00000467885 FANCIQ9NVI1 1328 aa7.73□□□□□ -1.17
USP39-213ENST00000467885 HEG1Q9ULI3 1381 aa7.72□□□□□ -1.17
USP39-213ENST00000467885 KRT27Q7Z3Y8 459 aa7.72□□□□□ -1.17
USP39-213ENST00000467885 TSPYL4Q9UJ04 414 aa7.72□□□□□ -1.17
USP39-213ENST00000467885 GIGYF1O75420 1035 aaPredicted RBP7.71□□□□□ -1.18
USP39-213ENST00000467885 RARSP54136 660 aaKnown RBP7.71□□□□□ -1.18
USP39-213ENST00000467885 ACSBG1Q96GR2 724 aa7.71□□□□□ -1.18
USP39-213ENST00000467885 ZNF496Q96IT1 587 aaPredicted RBP7.71□□□□□ -1.18
USP39-213ENST00000467885 SLC4A9Q96Q91 983 aa7.71□□□□□ -1.18
USP39-213ENST00000467885 TMEM121BQ9BXQ6 578 aaPredicted RBP7.71□□□□□ -1.18
USP39-213ENST00000467885 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.71□□□□□ -1.18
USP39-213ENST00000467885 NWD2Q9ULI1 1742 aa7.71□□□□□ -1.18
USP39-213ENST00000467885 GLI3P10071 1580 aa7.71□□□□□ -1.18
USP39-213ENST00000467885 NRAPQ86VF7 1730 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 A0A0G2JS52 829 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 PRAMEF22A3QJZ6 481 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 BCAR3O75815 825 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 CENPBP07199 599 aaPredicted RBP7.7□□□□□ -1.18
USP39-213ENST00000467885 CT47B1P0C2W7 299 aaPredicted RBP7.7□□□□□ -1.18
USP39-213ENST00000467885 MYT1Q01538 1121 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 TWISTNBQ3B726 338 aaPredicted RBP7.7□□□□□ -1.18
USP39-213ENST00000467885 FAM196AQ6ZSG2 479 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 TMOD3Q9NYL9 352 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 RCAN3Q9UKA8 241 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 SUPT16HQ9Y5B9 1047 aaKnown RBP7.7□□□□□ -1.18
USP39-213ENST00000467885 USP16Q9Y5T5 823 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 PLCH1Q4KWH8 1693 aa7.7□□□□□ -1.18
USP39-213ENST00000467885 BCL9O00512 1426 aa7.69□□□□□ -1.18
USP39-213ENST00000467885 SNPHO15079 494 aa7.69□□□□□ -1.18
USP39-213ENST00000467885 BRPF1P55201 1214 aaPredicted RBP7.69□□□□□ -1.18
USP39-213ENST00000467885 PDCD7Q8N8D1 485 aaKnown RBP7.69□□□□□ -1.18
USP39-213ENST00000467885 SSH1Q8WYL5 1049 aa7.69□□□□□ -1.18
USP39-213ENST00000467885 SYTL4Q96C24 671 aaPredicted RBP7.69□□□□□ -1.18
USP39-213ENST00000467885 BCL11BQ9C0K0 894 aaPredicted RBP7.69□□□□□ -1.18
USP39-213ENST00000467885 RNF123Q5XPI4 1314 aa7.69□□□□□ -1.18
USP39-213ENST00000467885 PTCD1O75127 700 aaKnown RBP7.68□□□□□ -1.18
USP39-213ENST00000467885 SNRPA1P09661 255 aaKnown RBP7.68□□□□□ -1.18
USP39-213ENST00000467885 PDIA6Q15084 440 aa7.68□□□□□ -1.18
USP39-213ENST00000467885 MRPL50Q8N5N7 158 aaKnown RBP7.68□□□□□ -1.18
USP39-213ENST00000467885 ZNF428Q96B54 188 aa7.68□□□□□ -1.18
USP39-213ENST00000467885 FMNL2Q96PY5 1086 aa7.68□□□□□ -1.18
USP39-213ENST00000467885 FBXO3Q9UK99 471 aa7.68□□□□□ -1.18
USP39-213ENST00000467885 TNS2Q63HR2 1409 aa7.68□□□□□ -1.18
USP39-213ENST00000467885 TCERG1O14776 1098 aaKnown RBP7.67□□□□□ -1.18
USP39-213ENST00000467885 TRIM37O94972 964 aa7.67□□□□□ -1.18
USP39-213ENST00000467885 EIF2S2P20042 333 aaKnown RBP7.67□□□□□ -1.18
USP39-213ENST00000467885 ALDH1L2Q3SY69 923 aa7.67□□□□□ -1.18
USP39-213ENST00000467885 VSIG10Q8N0Z9 540 aa7.67□□□□□ -1.18
USP39-213ENST00000467885 MARVELD3Q96A59 401 aa7.67□□□□□ -1.18
USP39-213ENST00000467885 SOS1Q07889 1333 aaPredicted RBP7.67□□□□□ -1.18
USP39-213ENST00000467885 A1BGP04217 495 aa7.66□□□□□ -1.18
USP39-213ENST00000467885 HOXB7P09629 217 aa7.66□□□□□ -1.18
USP39-213ENST00000467885 CYP19A1P11511 503 aaPredicted RBP7.66□□□□□ -1.18
USP39-213ENST00000467885 MMRN1Q13201 1228 aa7.66□□□□□ -1.18
USP39-213ENST00000467885 CCDC30Q5VVM6 783 aa7.66□□□□□ -1.18
USP39-213ENST00000467885 G2E3Q7L622 706 aa7.66□□□□□ -1.18
USP39-213ENST00000467885 LRP10Q7Z4F1 713 aa7.66□□□□□ -1.18
USP39-213ENST00000467885 SPNS2Q8IVW8 549 aa7.66□□□□□ -1.18
USP39-213ENST00000467885 TTC5Q8N0Z6 440 aa7.66□□□□□ -1.18
USP39-213ENST00000467885 SMARCC1Q92922 1105 aaPredicted RBP7.66□□□□□ -1.18
USP39-213ENST00000467885 TEX13AQ9BXU3 409 aaPredicted RBP7.66□□□□□ -1.18
USP39-213ENST00000467885 ADAMTS7Q9UKP4 1686 aa7.66□□□□□ -1.18
USP39-213ENST00000467885 LOC102724428A0A0B4J2F2 783 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 NBPF26B4DH59 902 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 PLSCR1O15162 318 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 PLIN1O60240 522 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 KCNQ4P56696 695 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 SIK1P57059 783 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 ITPK1Q13572 414 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 NBPF14Q5TI25 921 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 NBPF10Q6P3W6 841 aaKnown RBP7.65□□□□□ -1.18
USP39-213ENST00000467885 INTS5Q6P9B9 1019 aaKnown RBP7.65□□□□□ -1.18
USP39-213ENST00000467885 PKD1L3Q7Z443 1732 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 ZNF467Q7Z7K2 595 aaPredicted RBP7.65□□□□□ -1.18
USP39-213ENST00000467885 DNAJC10Q8IXB1 793 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 NBPF15Q8N660 670 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 NECTIN2Q92692 538 aa7.65□□□□□ -1.18
USP39-213ENST00000467885 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.65□□□□□ -1.18
USP39-213ENST00000467885 NOB1Q9ULX3 412 aaKnown RBP7.65□□□□□ -1.18
USP39-213ENST00000467885 THSD7AQ9UPZ6 1657 aa7.64□□□□□ -1.19
USP39-213ENST00000467885 ATP6V1AP38606 617 aa7.64□□□□□ -1.19
USP39-213ENST00000467885 GSE1Q14687 1217 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms