RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 CHSY3Q70JA7 882 aa8.92□□□□□ -0.98
USH2A-203ENST00000463147 PHTF2Q8N3S3 785 aa8.92□□□□□ -0.98
USH2A-203ENST00000463147 INHAP05111 366 aa8.91□□□□□ -0.98
USH2A-203ENST00000463147 TATP17735 454 aaPredicted RBP8.91□□□□□ -0.98
USH2A-203ENST00000463147 MAP7D1Q3KQU3 841 aa8.91□□□□□ -0.98
USH2A-203ENST00000463147 AIDAQ96BJ3 306 aa8.91□□□□□ -0.98
USH2A-203ENST00000463147 DNAAF2Q9NVR5 837 aaKnown RBP8.91□□□□□ -0.98
USH2A-203ENST00000463147 ZDHHC3Q9NYG2 299 aa8.9□□□□□ -0.98
USH2A-203ENST00000463147 CHIC2Q9UKJ5 165 aa8.9□□□□□ -0.98
USH2A-203ENST00000463147 SPATA31C1P0DKV0 1188 aa8.89□□□□□ -0.99
USH2A-203ENST00000463147 MAPTP10636 758 aaKnown RBP8.89□□□□□ -0.99
USH2A-203ENST00000463147 CHRNA4P43681 627 aa8.89□□□□□ -0.99
USH2A-203ENST00000463147 GDF10P55107 478 aa8.89□□□□□ -0.99
USH2A-203ENST00000463147 TNP2Q05952 138 aa8.89□□□□□ -0.99
USH2A-203ENST00000463147 OXLD1Q5BKU9 147 aa8.89□□□□□ -0.99
USH2A-203ENST00000463147 ARSJQ5FYB0 599 aaPredicted RBP8.89□□□□□ -0.99
USH2A-203ENST00000463147 A0A1W2PNR3 127 aa8.88□□□□□ -0.99
USH2A-203ENST00000463147 ATP4AP20648 1035 aa8.88□□□□□ -0.99
USH2A-203ENST00000463147 GATA4P43694 442 aa8.88□□□□□ -0.99
USH2A-203ENST00000463147 SMTNP53814 917 aa8.88□□□□□ -0.99
USH2A-203ENST00000463147 LAMC2Q13753 1193 aa8.88□□□□□ -0.99
USH2A-203ENST00000463147 SNRKQ9NRH2 765 aa8.88□□□□□ -0.99
USH2A-203ENST00000463147 PRR12Q9ULL5 1215 aa8.88□□□□□ -0.99
USH2A-203ENST00000463147 GJA3Q9Y6H8 435 aa8.88□□□□□ -0.99
USH2A-203ENST00000463147 KHNYNO15037 678 aaKnown RBP8.87□□□□□ -0.99
USH2A-203ENST00000463147 FAM157BP0CG42 384 aa8.87□□□□□ -0.99
USH2A-203ENST00000463147 ALAS2P22557 587 aa8.87□□□□□ -0.99
USH2A-203ENST00000463147 KRTAP4-8Q9BYQ9 185 aa8.87□□□□□ -0.99
USH2A-203ENST00000463147 CDK2AP1O14519 115 aa8.86□□□□□ -0.99
USH2A-203ENST00000463147 SCNN1DP51172 638 aa8.86□□□□□ -0.99
USH2A-203ENST00000463147 SAMD5Q5TGI4 173 aa8.86□□□□□ -0.99
USH2A-203ENST00000463147 ZNF468Q5VIY5 522 aaPredicted RBP8.86□□□□□ -0.99
USH2A-203ENST00000463147 SEMA6BQ9H3T3 888 aa8.86□□□□□ -0.99
USH2A-203ENST00000463147 DCDC2BA2VCK2 349 aa8.85□□□□□ -0.99
USH2A-203ENST00000463147 CD33P20138 364 aa8.84□□□□□ -0.99
USH2A-203ENST00000463147 DOC2BQ14184 412 aa8.84□□□□□ -0.99
USH2A-203ENST00000463147 TSGA10IPQ3SY00 556 aa8.84□□□□□ -0.99
USH2A-203ENST00000463147 PRRT3Q5FWE3 981 aa8.84□□□□□ -0.99
USH2A-203ENST00000463147 FCHSD1Q86WN1 690 aa8.84□□□□□ -0.99
USH2A-203ENST00000463147 SLC4A9Q96Q91 983 aa8.84□□□□□ -0.99
USH2A-203ENST00000463147 PLVAPQ9BX97 442 aa8.84□□□□□ -0.99
USH2A-203ENST00000463147 MARK1Q9P0L2 795 aa8.84□□□□□ -0.99
USH2A-203ENST00000463147 SOX11P35716 441 aa8.83□□□□□ -1
USH2A-203ENST00000463147 MTFR1Q15390 333 aa8.83□□□□□ -1
USH2A-203ENST00000463147 WASHC4Q2M389 1173 aa8.83□□□□□ -1
USH2A-203ENST00000463147 PSMG3-AS1Q96PY0 264 aa8.83□□□□□ -1
USH2A-203ENST00000463147 TBC1D2BQ9UPU7 963 aa8.83□□□□□ -1
USH2A-203ENST00000463147 ELOA3CA0A087WX78 387 aaPredicted RBP8.82□□□□□ -1
USH2A-203ENST00000463147 A6NJY4 79 aa8.82□□□□□ -1
USH2A-203ENST00000463147 ELOA3DA6NLF2 546 aaPredicted RBP8.82□□□□□ -1
USH2A-203ENST00000463147 BACH1O14867 736 aa8.82□□□□□ -1
USH2A-203ENST00000463147 APBA3O96018 575 aa8.82□□□□□ -1
USH2A-203ENST00000463147 ELOA3BQ3SY89 546 aa8.82□□□□□ -1
USH2A-203ENST00000463147 ZMYM1Q5SVZ6 1142 aa8.82□□□□□ -1
USH2A-203ENST00000463147 ELOA3Q8NG57 546 aa8.82□□□□□ -1
USH2A-203ENST00000463147 ZIC5Q96T25 663 aa8.82□□□□□ -1
USH2A-203ENST00000463147 KLF15Q9UIH9 416 aa8.82□□□□□ -1
USH2A-203ENST00000463147 STAU1O95793 577 aaKnown RBP8.81□□□□□ -1
USH2A-203ENST00000463147 BICDL1Q6ZP65 573 aa8.81□□□□□ -1
USH2A-203ENST00000463147 PLPP7Q8NBV4 271 aa8.81□□□□□ -1
USH2A-203ENST00000463147 TRIM11Q96F44 468 aa8.81□□□□□ -1
USH2A-203ENST00000463147 NACC1Q96RE7 527 aa8.81□□□□□ -1
USH2A-203ENST00000463147 CABP1Q9NZU7 370 aa8.81□□□□□ -1
USH2A-203ENST00000463147 GPC6Q9Y625 555 aaPredicted RBP8.81□□□□□ -1
USH2A-203ENST00000463147 PCBP4P57723 403 aaKnown RBP8.8□□□□□ -1
USH2A-203ENST00000463147 LZTS3O60299 673 aaPredicted RBP8.79□□□□□ -1
USH2A-203ENST00000463147 SEMA3FQ13275 785 aa8.79□□□□□ -1
USH2A-203ENST00000463147 SERTAD1Q9UHV2 236 aa8.79□□□□□ -1
USH2A-203ENST00000463147 IQSEC3Q9UPP2 1182 aaPredicted RBP8.79□□□□□ -1
USH2A-203ENST00000463147 EFSO43281 561 aa8.78□□□□□ -1
USH2A-203ENST00000463147 SIN3BO75182 1162 aa8.78□□□□□ -1
USH2A-203ENST00000463147 NEUROD1Q13562 356 aa8.78□□□□□ -1
USH2A-203ENST00000463147 IRF5Q13568 498 aa8.78□□□□□ -1
USH2A-203ENST00000463147 ZNF295-AS1Q8N0V1 137 aa8.78□□□□□ -1
USH2A-203ENST00000463147 NEUROD4Q9HD90 331 aa8.77□□□□□ -1.01
USH2A-203ENST00000463147 PRDM6Q9NQX0 595 aa8.77□□□□□ -1.01
USH2A-203ENST00000463147 ADARB2-AS1A8MUL3 147 aa8.76□□□□□ -1.01
USH2A-203ENST00000463147 TMEM229AB2RXF0 380 aa8.76□□□□□ -1.01
USH2A-203ENST00000463147 ITGB7P26010 798 aa8.76□□□□□ -1.01
USH2A-203ENST00000463147 BRPF1P55201 1214 aaPredicted RBP8.76□□□□□ -1.01
USH2A-203ENST00000463147 VAC14Q08AM6 782 aa8.76□□□□□ -1.01
USH2A-203ENST00000463147 SYT9Q86SS6 491 aa8.76□□□□□ -1.01
USH2A-203ENST00000463147 TRIM28Q13263 835 aaKnown RBP8.75□□□□□ -1.01
USH2A-203ENST00000463147 RSPO4Q2I0M5 234 aaPredicted RBP8.75□□□□□ -1.01
USH2A-203ENST00000463147 SCO2A0A1W2PP80 73 aa8.74□□□□□ -1.01
USH2A-203ENST00000463147 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.74□□□□□ -1.01
USH2A-203ENST00000463147 EML3Q32P44 896 aa8.74□□□□□ -1.01
USH2A-203ENST00000463147 NKAPLQ5M9Q1 402 aa8.74□□□□□ -1.01
USH2A-203ENST00000463147 TNFRSF25Q93038 417 aa8.74□□□□□ -1.01
USH2A-203ENST00000463147 HCN2Q9UL51 889 aa8.74□□□□□ -1.01
USH2A-203ENST00000463147 TEAD4Q15561 434 aa8.73□□□□□ -1.01
USH2A-203ENST00000463147 MDFIQ99750 246 aa8.73□□□□□ -1.01
USH2A-203ENST00000463147 NOD1Q9Y239 953 aa8.73□□□□□ -1.01
USH2A-203ENST00000463147 KRTAP9-2Q9BYQ4 174 aa8.72□□□□□ -1.01
USH2A-203ENST00000463147 STRN4Q9NRL3 753 aa8.72□□□□□ -1.01
USH2A-203ENST00000463147 SCHIP1Q9P0W5 487 aaPredicted RBP8.72□□□□□ -1.01
USH2A-203ENST00000463147 PCDHGA11Q9Y5H2 935 aa8.72□□□□□ -1.01
USH2A-203ENST00000463147 M0R082 166 aa8.71□□□□□ -1.02
USH2A-203ENST00000463147 ZNF417Q8TAU3 575 aa8.71□□□□□ -1.02
USH2A-203ENST00000463147 L3MBTL2Q969R5 705 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms