RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 GNPATO15228 680 aa9.98□□□□□ -0.81
USP4-207ENST00000462673 GIGYF1O75420 1035 aaPredicted RBP9.98□□□□□ -0.81
USP4-207ENST00000462673 ZNF853P0CG23 659 aa9.98□□□□□ -0.81
USP4-207ENST00000462673 CYP19A1P11511 503 aaPredicted RBP9.98□□□□□ -0.81
USP4-207ENST00000462673 IL6STP40189 918 aaPredicted RBP9.98□□□□□ -0.81
USP4-207ENST00000462673 DNAJC10Q8IXB1 793 aa9.98□□□□□ -0.81
USP4-207ENST00000462673 POLD1P28340 1107 aa9.97□□□□□ -0.81
USP4-207ENST00000462673 DEKP35659 375 aaKnown RBP9.97□□□□□ -0.81
USP4-207ENST00000462673 CRKLP46109 303 aaKnown RBP9.97□□□□□ -0.81
USP4-207ENST00000462673 KCNQ4P56696 695 aa9.97□□□□□ -0.81
USP4-207ENST00000462673 IRX6P78412 446 aaPredicted RBP9.97□□□□□ -0.81
USP4-207ENST00000462673 ITPK1Q13572 414 aa9.97□□□□□ -0.81
USP4-207ENST00000462673 NLGN1Q8N2Q7 840 aa9.97□□□□□ -0.81
USP4-207ENST00000462673 LINC00116Q8NCU8 138 aa9.97□□□□□ -0.81
USP4-207ENST00000462673 ARXQ96QS3 562 aa9.97□□□□□ -0.81
USP4-207ENST00000462673 SPON1Q9HCB6 807 aa9.97□□□□□ -0.81
USP4-207ENST00000462673 MBIPQ9NS73 344 aa9.97□□□□□ -0.81
USP4-207ENST00000462673 ERBB4Q15303 1308 aa9.97□□□□□ -0.81
USP4-207ENST00000462673 LY75O60449 1722 aa9.96□□□□□ -0.81
USP4-207ENST00000462673 TOGARAM1Q9Y4F4 1720 aa9.96□□□□□ -0.81
USP4-207ENST00000462673 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.96□□□□□ -0.82
USP4-207ENST00000462673 KCNQ3O43525 872 aa9.96□□□□□ -0.82
USP4-207ENST00000462673 EIF2S2P20042 333 aaKnown RBP9.96□□□□□ -0.82
USP4-207ENST00000462673 CANXP27824 592 aaKnown RBP9.96□□□□□ -0.82
USP4-207ENST00000462673 MAPK8IP2Q13387 824 aaPredicted RBP9.96□□□□□ -0.82
USP4-207ENST00000462673 CCDC30Q5VVM6 783 aa9.96□□□□□ -0.82
USP4-207ENST00000462673 SLC4A9Q96Q91 983 aa9.96□□□□□ -0.82
USP4-207ENST00000462673 MTFR1LQ9H019 292 aa9.96□□□□□ -0.82
USP4-207ENST00000462673 DBF4Q9UBU7 674 aaPredicted RBP9.96□□□□□ -0.82
USP4-207ENST00000462673 USP16Q9Y5T5 823 aa9.96□□□□□ -0.82
USP4-207ENST00000462673 ZNF831Q5JPB2 1677 aa9.96□□□□□ -0.82
USP4-207ENST00000462673 DLG5Q8TDM6 1919 aa9.95□□□□□ -0.82
USP4-207ENST00000462673 PSDA5PKW4 1024 aaPredicted RBP9.95□□□□□ -0.82
USP4-207ENST00000462673 RGL2O15211 777 aa9.95□□□□□ -0.82
USP4-207ENST00000462673 PHF14O94880 888 aa9.95□□□□□ -0.82
USP4-207ENST00000462673 ANP32AP39687 249 aaKnown RBP9.95□□□□□ -0.82
USP4-207ENST00000462673 INTS5Q6P9B9 1019 aaKnown RBP9.95□□□□□ -0.82
USP4-207ENST00000462673 ZNF428Q96B54 188 aa9.95□□□□□ -0.82
USP4-207ENST00000462673 STK31Q9BXU1 1019 aa9.95□□□□□ -0.82
USP4-207ENST00000462673 ZNF652Q9Y2D9 606 aa9.95□□□□□ -0.82
USP4-207ENST00000462673 ZNF827Q17R98 1081 aa9.94□□□□□ -0.82
USP4-207ENST00000462673 RTL5Q5HYW3 569 aaPredicted RBP9.94□□□□□ -0.82
USP4-207ENST00000462673 HDGFL1Q5TGJ6 251 aa9.94□□□□□ -0.82
USP4-207ENST00000462673 DUSP27Q5VZP5 1158 aa9.94□□□□□ -0.82
USP4-207ENST00000462673 COL23A1Q86Y22 540 aaPredicted RBP9.94□□□□□ -0.82
USP4-207ENST00000462673 ARHGEF1Q92888 912 aaKnown RBP9.94□□□□□ -0.82
USP4-207ENST00000462673 HYPKQ9NX55 129 aa9.94□□□□□ -0.82
USP4-207ENST00000462673 ZNF330Q9Y3S2 320 aaPredicted RBP9.94□□□□□ -0.82
USP4-207ENST00000462673 A1BGP04217 495 aa9.93□□□□□ -0.82
USP4-207ENST00000462673 CT47B1P0C2W7 299 aaPredicted RBP9.93□□□□□ -0.82
USP4-207ENST00000462673 EIF5P55010 431 aaKnown RBP9.93□□□□□ -0.82
USP4-207ENST00000462673 TWISTNBQ3B726 338 aaPredicted RBP9.93□□□□□ -0.82
USP4-207ENST00000462673 CLEC4GQ6UXB4 293 aa9.93□□□□□ -0.82
USP4-207ENST00000462673 KIF6Q6ZMV9 814 aa9.93□□□□□ -0.82
USP4-207ENST00000462673 ANO8Q9HCE9 1232 aaPredicted RBP9.93□□□□□ -0.82
USP4-207ENST00000462673 PPP1R1BQ9UD71 204 aaPredicted RBP9.93□□□□□ -0.82
USP4-207ENST00000462673 NARFQ9UHQ1 456 aa9.93□□□□□ -0.82
USP4-207ENST00000462673 RREB1Q92766 1687 aa9.93□□□□□ -0.82
USP4-207ENST00000462673 PNPLA7Q6ZV29 1317 aa9.92□□□□□ -0.82
USP4-207ENST00000462673 ELL2O00472 640 aaPredicted RBP9.92□□□□□ -0.82
USP4-207ENST00000462673 DDX58O95786 925 aaKnown RBP9.92□□□□□ -0.82
USP4-207ENST00000462673 SLFN5Q08AF3 891 aa9.92□□□□□ -0.82
USP4-207ENST00000462673 DDX21Q9NR30 783 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP4-207ENST00000462673 ZBTB1Q9Y2K1 713 aa9.92□□□□□ -0.82
USP4-207ENST00000462673 KCPQ6ZWJ8 1503 aa9.92□□□□□ -0.82
USP4-207ENST00000462673 SIPA1L3O60292 1781 aaPredicted RBP9.91□□□□□ -0.82
USP4-207ENST00000462673 ZNF521Q96K83 1311 aa9.91□□□□□ -0.82
USP4-207ENST00000462673 C5P01031 1676 aa9.91□□□□□ -0.82
USP4-207ENST00000462673 DCAF8L1A6NGE4 600 aa9.91□□□□□ -0.82
USP4-207ENST00000462673 ERVV-1B6SEH8 477 aa9.91□□□□□ -0.82
USP4-207ENST00000462673 MYL6BP14649 208 aa9.91□□□□□ -0.82
USP4-207ENST00000462673 HSP90AB3PQ58FF7 597 aa9.91□□□□□ -0.82
USP4-207ENST00000462673 DZIP3Q86Y13 1208 aaKnown RBP9.91□□□□□ -0.82
USP4-207ENST00000462673 PARP3Q9Y6F1 533 aa9.91□□□□□ -0.82
USP4-207ENST00000462673 C4BP0C0L5 1744 aa9.9□□□□□ -0.82
USP4-207ENST00000462673 NUP188Q5SRE5 1749 aa9.9□□□□□ -0.82
USP4-207ENST00000462673 SENP3-EIF4A1A0A087X0R7 540 aa9.9□□□□□ -0.82
USP4-207ENST00000462673 NPHP1O15259 732 aa9.9□□□□□ -0.82
USP4-207ENST00000462673 ZBTB7AO95365 584 aa9.9□□□□□ -0.82
USP4-207ENST00000462673 EXOSC9Q06265 439 aaKnown RBP9.9□□□□□ -0.82
USP4-207ENST00000462673 C8orf58Q8NAV2 365 aa9.9□□□□□ -0.82
USP4-207ENST00000462673 TSR2Q969E8 191 aaKnown RBP9.9□□□□□ -0.82
USP4-207ENST00000462673 SETDB2Q96T68 719 aa9.9□□□□□ -0.82
USP4-207ENST00000462673 ATF5Q9Y2D1 282 aaPredicted RBP9.9□□□□□ -0.82
USP4-207ENST00000462673 COL15A1P39059 1388 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 PAPPAQ13219 1627 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 USP42Q9H9J4 1324 aaKnown RBP9.89□□□□□ -0.83
USP4-207ENST00000462673 UBR2Q8IWV8 1755 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 PRAMEF22A3QJZ6 481 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 VAMP4O75379 141 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 SLC4A2P04920 1241 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 USPL1Q5W0Q7 1092 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 B4GALNT3Q6L9W6 998 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 ANKRD13DQ6ZTN6 518 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 TBC1D2BQ9UPU7 963 aa9.89□□□□□ -0.83
USP4-207ENST00000462673 RNF123Q5XPI4 1314 aa9.88□□□□□ -0.83
USP4-207ENST00000462673 GYS1P13807 737 aa9.88□□□□□ -0.83
USP4-207ENST00000462673 HSP90B1P14625 803 aaKnown RBP9.88□□□□□ -0.83
USP4-207ENST00000462673 GTF2E1P29083 439 aaPredicted RBP9.88□□□□□ -0.83
USP4-207ENST00000462673 TPTE2Q6XPS3 522 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 130.8 ms