RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 ATP13A2Q9NQ11 1180 aa7.55□□□□□ -1.2
VPS41-210ENST00000462429 USP3Q9Y6I4 520 aa7.55□□□□□ -1.2
VPS41-210ENST00000462429 TEAD4Q15561 434 aa7.54□□□□□ -1.2
VPS41-210ENST00000462429 MKNK1Q9BUB5 465 aa7.54□□□□□ -1.2
VPS41-210ENST00000462429 C2orf49Q9BVC5 232 aaPredicted RBP7.54□□□□□ -1.2
VPS41-210ENST00000462429 ZNF232Q9UNY5 417 aa7.54□□□□□ -1.2
VPS41-210ENST00000462429 SOS2Q07890 1332 aaPredicted RBP7.53□□□□□ -1.2
VPS41-210ENST00000462429 SPATA31C2B4DYI2 1134 aa7.53□□□□□ -1.2
VPS41-210ENST00000462429 NOS2P35228 1153 aa7.53□□□□□ -1.2
VPS41-210ENST00000462429 TXNDC2Q86VQ3 553 aa7.53□□□□□ -1.2
VPS41-210ENST00000462429 GNEQ9Y223 722 aaKnown RBP7.53□□□□□ -1.2
VPS41-210ENST00000462429 IVNS1ABPQ9Y6Y0 642 aa7.53□□□□□ -1.2
VPS41-210ENST00000462429 HIRAP54198 1017 aaPredicted RBP7.52□□□□□ -1.21
VPS41-210ENST00000462429 TRIM26Q12899 539 aaPredicted RBP7.52□□□□□ -1.21
VPS41-210ENST00000462429 C4orf17Q53FE4 359 aa7.52□□□□□ -1.21
VPS41-210ENST00000462429 WDR44Q5JSH3 913 aa7.52□□□□□ -1.21
VPS41-210ENST00000462429 PRICKLE2Q7Z3G6 844 aa7.52□□□□□ -1.21
VPS41-210ENST00000462429 ZNF295-AS1Q8N0V1 137 aa7.52□□□□□ -1.21
VPS41-210ENST00000462429 L3MBTL2Q969R5 705 aa7.52□□□□□ -1.21
VPS41-210ENST00000462429 FIGNL2A6NMB9 653 aa7.51□□□□□ -1.21
VPS41-210ENST00000462429 EML1O00423 815 aa7.51□□□□□ -1.21
VPS41-210ENST00000462429 PLA2G4AP47712 749 aa7.51□□□□□ -1.21
VPS41-210ENST00000462429 POU4F2Q12837 409 aa7.51□□□□□ -1.21
VPS41-210ENST00000462429 NBPF10Q6P3W6 841 aaKnown RBP7.51□□□□□ -1.21
VPS41-210ENST00000462429 POTEAQ6S8J7 498 aa7.51□□□□□ -1.21
VPS41-210ENST00000462429 Q6ZNB5 142 aa7.51□□□□□ -1.21
VPS41-210ENST00000462429 ZDHHC1Q8WTX9 485 aa7.51□□□□□ -1.21
VPS41-210ENST00000462429 KIFC2Q96AC6 838 aa7.51□□□□□ -1.21
VPS41-210ENST00000462429 SENP2Q9HC62 589 aa7.51□□□□□ -1.21
VPS41-210ENST00000462429 MAN1A2O60476 641 aa7.5□□□□□ -1.21
VPS41-210ENST00000462429 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.5□□□□□ -1.21
VPS41-210ENST00000462429 NBPF1Q3BBV0 1214 aa7.5□□□□□ -1.21
VPS41-210ENST00000462429 PARP3Q9Y6F1 533 aa7.5□□□□□ -1.21
VPS41-210ENST00000462429 RHOQP17081 205 aa7.49□□□□□ -1.21
VPS41-210ENST00000462429 SCNN1AP37088 669 aa7.49□□□□□ -1.21
VPS41-210ENST00000462429 PHKA2P46019 1235 aa7.49□□□□□ -1.21
VPS41-210ENST00000462429 AIDAQ96BJ3 306 aa7.49□□□□□ -1.21
VPS41-210ENST00000462429 SEPT3Q9UH03 358 aa7.49□□□□□ -1.21
VPS41-210ENST00000462429 DACH1Q9UI36 760 aa7.49□□□□□ -1.21
VPS41-210ENST00000462429 DNMT3LQ9UJW3 386 aa7.49□□□□□ -1.21
VPS41-210ENST00000462429 HCN4Q9Y3Q4 1203 aa7.49□□□□□ -1.21
VPS41-210ENST00000462429 ABL1P00519 1130 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 TATP17735 454 aaPredicted RBP7.48□□□□□ -1.21
VPS41-210ENST00000462429 SERPINB4P48594 390 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 SH3PXD2AQ5TCZ1 1133 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 C1orf53Q5VUE5 145 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 C16orf46Q6P387 395 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 CAPN12Q6ZSI9 719 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 ALDH16A1Q8IZ83 802 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 GTF3C2Q8WUA4 911 aaPredicted RBP7.48□□□□□ -1.21
VPS41-210ENST00000462429 NGLY1Q96IV0 654 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 PHACTR1Q9C0D0 580 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 TIMMDC1Q9NPL8 285 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 ZDHHC3Q9NYG2 299 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 EGFL7Q9UHF1 273 aa7.48□□□□□ -1.21
VPS41-210ENST00000462429 A0A1B0GTH6 734 aa7.47□□□□□ -1.21
VPS41-210ENST00000462429 NAA30Q147X3 362 aaPredicted RBP7.47□□□□□ -1.21
VPS41-210ENST00000462429 GZF1Q9H116 711 aaPredicted RBP7.47□□□□□ -1.21
VPS41-210ENST00000462429 TXLNAP40222 546 aa7.46□□□□□ -1.22
VPS41-210ENST00000462429 SF3B2Q13435 895 aaKnown RBP7.46□□□□□ -1.22
VPS41-210ENST00000462429 RTN1Q16799 776 aa7.46□□□□□ -1.22
VPS41-210ENST00000462429 HELQQ8TDG4 1101 aa7.46□□□□□ -1.22
VPS41-210ENST00000462429 MYO19Q96H55 970 aa7.46□□□□□ -1.22
VPS41-210ENST00000462429 TRIM47Q96LD4 638 aa7.46□□□□□ -1.22
VPS41-210ENST00000462429 QTRT2Q9H974 415 aaKnown RBP7.46□□□□□ -1.22
VPS41-210ENST00000462429 GPC6Q9Y625 555 aaPredicted RBP7.46□□□□□ -1.22
VPS41-210ENST00000462429 HIF1AQ16665 826 aa7.45□□□□□ -1.22
VPS41-210ENST00000462429 RHPN1Q8TCX5 695 aa7.45□□□□□ -1.22
VPS41-210ENST00000462429 GMPR2Q9P2T1 348 aaKnown RBP7.45□□□□□ -1.22
VPS41-210ENST00000462429 SOWAHDA6NJG2 315 aa7.44□□□□□ -1.22
VPS41-210ENST00000462429 FKBP4Q02790 459 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS41-210ENST00000462429 ZNF211Q13398 564 aaPredicted RBP7.44□□□□□ -1.22
VPS41-210ENST00000462429 COX20Q5RI15 118 aa7.44□□□□□ -1.22
VPS41-210ENST00000462429 BICDL1Q6ZP65 573 aa7.44□□□□□ -1.22
VPS41-210ENST00000462429 GLYCTKQ8IVS8 523 aa7.44□□□□□ -1.22
VPS41-210ENST00000462429 SAP130Q9H0E3 1048 aa7.44□□□□□ -1.22
VPS41-210ENST00000462429 DYRK1BQ9Y463 629 aa7.44□□□□□ -1.22
VPS41-210ENST00000462429 DNMT3AQ9Y6K1 912 aaPredicted RBP7.44□□□□□ -1.22
VPS41-210ENST00000462429 SOBPA7XYQ1 873 aa7.43□□□□□ -1.22
VPS41-210ENST00000462429 H3BRB1 525 aa7.43□□□□□ -1.22
VPS41-210ENST00000462429 ICMTO60725 284 aa7.43□□□□□ -1.22
VPS41-210ENST00000462429 F11P03951 625 aa7.43□□□□□ -1.22
VPS41-210ENST00000462429 MSX1P28360 303 aa7.43□□□□□ -1.22
VPS41-210ENST00000462429 C11orf91Q3C1V1 193 aa7.43□□□□□ -1.22
VPS41-210ENST00000462429 SND1Q7KZF4 910 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS41-210ENST00000462429 TUT1Q9H6E5 874 aaKnown RBP7.43□□□□□ -1.22
VPS41-210ENST00000462429 NEUROD4Q9HD90 331 aa7.43□□□□□ -1.22
VPS41-210ENST00000462429 ANO2Q9NQ90 1003 aa7.43□□□□□ -1.22
VPS41-210ENST00000462429 C11orf95C9JLR9 678 aaPredicted RBP7.42□□□□□ -1.22
VPS41-210ENST00000462429 ATP4AP20648 1035 aa7.42□□□□□ -1.22
VPS41-210ENST00000462429 BRD2P25440 801 aaKnown RBP7.42□□□□□ -1.22
VPS41-210ENST00000462429 PTSQ03393 145 aa7.42□□□□□ -1.22
VPS41-210ENST00000462429 DGKZQ13574 1117 aa7.42□□□□□ -1.22
VPS41-210ENST00000462429 ARSJQ5FYB0 599 aaPredicted RBP7.42□□□□□ -1.22
VPS41-210ENST00000462429 PGBD3Q8N328 593 aa7.42□□□□□ -1.22
VPS41-210ENST00000462429 ABTB2Q8N961 1025 aa7.42□□□□□ -1.22
VPS41-210ENST00000462429 GAS2L1Q99501 681 aaPredicted RBP7.42□□□□□ -1.22
VPS41-210ENST00000462429 PODXL2Q9NZ53 605 aa7.42□□□□□ -1.22
VPS41-210ENST00000462429 STIM2Q9P246 746 aa7.42□□□□□ -1.22
VPS41-210ENST00000462429 BIN2Q9UBW5 565 aaPredicted RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms