RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CCDC47Q96A33 483 aaKnown RBP8.29□□□□□ -1.08
SYNE1-216ENST00000461872 USP26Q9BXU7 913 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 PDE1AP54750 535 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 STX1AQ16623 288 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 PLEKHM2Q8IWE5 1019 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 PIBF1Q8WXW3 757 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 SDF4Q9BRK5 362 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 V9GYY5 206 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-216ENST00000461872 IQSEC2Q5JU85 1478 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 RGS12O14924 1447 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 ZBTB7BO15156 539 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-216ENST00000461872 RALYLQ86SE5 291 aaKnown RBP8.29□□□□□ -1.08
SYNE1-216ENST00000461872 CDR1P51861 262 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 TTC5Q8N0Z6 440 aa8.29□□□□□ -1.08
SYNE1-216ENST00000461872 USP8P40818 1118 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 ESYT1Q9BSJ8 1104 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 A2ML1A8K2U0 1454 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 SFPQP23246 707 aaKnown RBP eCLIP8.28□□□□□ -1.08
SYNE1-216ENST00000461872 TPD52L1Q16890 204 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-216ENST00000461872 VPS53Q5VIR6 699 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 SMARCE1Q969G3 411 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 HMOX1P09601 288 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 TUBB2AQ13885 445 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 HOMER1Q86YM7 354 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 TUBB2BQ9BVA1 445 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 ELL2O00472 640 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-216ENST00000461872 TAF7Q15545 349 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-216ENST00000461872 U3KPZ7 1027 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-216ENST00000461872 ARHGEF40Q8TER5 1519 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 FIBPO43427 364 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 SART3Q15020 963 aaKnown RBP8.28□□□□□ -1.08
SYNE1-216ENST00000461872 SULT6B1Q6IMI4 303 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 NUDT16Q96DE0 195 aaKnown RBP8.28□□□□□ -1.08
SYNE1-216ENST00000461872 FSD1Q9BTV5 496 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 HYPKQ9NX55 129 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 GLI2P10070 1586 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 TULP1O00294 542 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-216ENST00000461872 ECHDC1Q9NTX5 307 aa8.28□□□□□ -1.08
SYNE1-216ENST00000461872 RLBP1P12271 317 aa8.27□□□□□ -1.08
SYNE1-216ENST00000461872 PNPLA6Q8IY17 1366 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 ABCC3O15438 1527 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 TMX3Q96JJ7 454 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 A0A0G2JS52 829 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 SDSP20132 328 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 FLIIQ13045 1269 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 MYRIPQ8NFW9 859 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 ELP1O95163 1332 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 BRMS1Q9HCU9 246 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 PHAXQ9H814 394 aaKnown RBP8.27□□□□□ -1.09
SYNE1-216ENST00000461872 ATP8B2P98198 1209 aa8.27□□□□□ -1.09
SYNE1-216ENST00000461872 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.27□□□□□ -1.09
SYNE1-216ENST00000461872 THEMISQ8N1K5 641 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-216ENST00000461872 PTPN14Q15678 1187 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 TMEM87AQ8NBN3 555 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 DBF4Q9UBU7 674 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-216ENST00000461872 RNF214Q8ND24 703 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 LLPHQ9BRT6 129 aaKnown RBP8.26□□□□□ -1.09
SYNE1-216ENST00000461872 LUC7LQ9NQ29 371 aaKnown RBP8.26□□□□□ -1.09
SYNE1-216ENST00000461872 PPLO60437 1756 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 ADGRB2O60241 1585 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 CAMSAP1Q5T5Y3 1602 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 A6NNZ2 444 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 SRGAP3O43295 1099 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 NOLC1Q14978 699 aaKnown RBP eCLIP8.26□□□□□ -1.09
SYNE1-216ENST00000461872 TUBB8Q3ZCM7 444 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 CCDC83Q8IWF9 413 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 SBNO1A3KN83 1393 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 AKAP17AQ02040 695 aaKnown RBP8.26□□□□□ -1.09
SYNE1-216ENST00000461872 UTP14CQ5TAP6 766 aaKnown RBP8.26□□□□□ -1.09
SYNE1-216ENST00000461872 CTR9Q6PD62 1173 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 NAP1L2Q9ULW6 460 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-216ENST00000461872 KRT222Q8N1A0 295 aa8.26□□□□□ -1.09
SYNE1-216ENST00000461872 IDI1Q13907 227 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 CEP85Q6P2H3 762 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 BRD1O95696 1058 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 BMP15O95972 392 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 CALRP27797 417 aaKnown RBP8.25□□□□□ -1.09
SYNE1-216ENST00000461872 FILIP1LQ4L180 1135 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 ADGRL3Q9HAR2 1447 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 BMS1Q14692 1282 aaKnown RBP8.25□□□□□ -1.09
SYNE1-216ENST00000461872 LARP1Q6PKG0 1096 aaKnown RBP8.25□□□□□ -1.09
SYNE1-216ENST00000461872 CHL1O00533 1208 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 ADCY5O95622 1261 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 KANK3Q6NY19 840 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 UPF3BQ9BZI7 483 aaKnown RBP8.25□□□□□ -1.09
SYNE1-216ENST00000461872 ANKRD26Q9UPS8 1709 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 F13A1P00488 732 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 STK38Q15208 465 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 ANKRD24Q8TF21 1146 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 TRIM35Q9UPQ4 493 aa8.25□□□□□ -1.09
SYNE1-216ENST00000461872 CASTP20810 708 aaKnown RBP8.24□□□□□ -1.09
SYNE1-216ENST00000461872 LEKR1Q6ZMV7 388 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 MAP9Q49MG5 647 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 CFAP65Q6ZU64 1925 aaKnown RBP8.24□□□□□ -1.09
SYNE1-216ENST00000461872 RGS22Q8NE09 1264 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 OGFRQ9NZT2 677 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 CEP131Q9UPN4 1083 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 IMPACTQ9P2X3 320 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 EHBP1Q8NDI1 1231 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 UBXN4Q92575 508 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms