RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 LGR6Q9HBX8 967 aa19.59■□□□□ 0.73
TMEM39A-203ENST00000461654 CNTNAP4Q9C0A0 1308 aa19.58■□□□□ 0.73
TMEM39A-203ENST00000461654 SCN11AQ9UI33 1791 aa19.58■□□□□ 0.73
TMEM39A-203ENST00000461654 PHF14O94880 888 aa19.58■□□□□ 0.72
TMEM39A-203ENST00000461654 ZNF853P0CG23 659 aa19.58■□□□□ 0.72
TMEM39A-203ENST00000461654 TEFQ10587 303 aa19.58■□□□□ 0.72
TMEM39A-203ENST00000461654 IL17REQ8NFR9 667 aa19.58■□□□□ 0.72
TMEM39A-203ENST00000461654 MSL1Q68DK7 614 aa19.57■□□□□ 0.72
TMEM39A-203ENST00000461654 MBIPQ9NS73 344 aa19.57■□□□□ 0.72
TMEM39A-203ENST00000461654 BABAM1Q9NWV8 329 aa19.57■□□□□ 0.72
TMEM39A-203ENST00000461654 RTCBQ9Y3I0 505 aaKnown RBP19.57■□□□□ 0.72
TMEM39A-203ENST00000461654 ADAMTS7Q9UKP4 1686 aa19.56■□□□□ 0.72
TMEM39A-203ENST00000461654 MRC1P22897 1456 aa19.56■□□□□ 0.72
TMEM39A-203ENST00000461654 CHL1O00533 1208 aa19.56■□□□□ 0.72
TMEM39A-203ENST00000461654 ADRA2BP18089 450 aa19.56■□□□□ 0.72
TMEM39A-203ENST00000461654 EXOSC9Q06265 439 aaKnown RBP19.56■□□□□ 0.72
TMEM39A-203ENST00000461654 TAF7Q15545 349 aaPredicted RBP19.56■□□□□ 0.72
TMEM39A-203ENST00000461654 SMIM5Q71RC9 77 aa19.56■□□□□ 0.72
TMEM39A-203ENST00000461654 CD2APQ9Y5K6 639 aa19.56■□□□□ 0.72
TMEM39A-203ENST00000461654 PTCD1O75127 700 aaKnown RBP19.55■□□□□ 0.72
TMEM39A-203ENST00000461654 RPS6KA4O75676 772 aa19.55■□□□□ 0.72
TMEM39A-203ENST00000461654 YY1P25490 414 aa19.55■□□□□ 0.72
TMEM39A-203ENST00000461654 TRAPPC3LQ5T215 181 aa19.55■□□□□ 0.72
TMEM39A-203ENST00000461654 TSPYL4Q9UJ04 414 aa19.55■□□□□ 0.72
TMEM39A-203ENST00000461654 CEMIPQ8WUJ3 1361 aa19.55■□□□□ 0.72
TMEM39A-203ENST00000461654 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.54■□□□□ 0.72
TMEM39A-203ENST00000461654 KLHL34Q8N239 644 aa19.53■□□□□ 0.72
TMEM39A-203ENST00000461654 CICQ96RK0 1608 aaPredicted RBP19.53■□□□□ 0.72
TMEM39A-203ENST00000461654 COL5A3P25940 1745 aaPredicted RBP19.53■□□□□ 0.72
TMEM39A-203ENST00000461654 NLGN2Q8NFZ4 835 aa19.52■□□□□ 0.72
TMEM39A-203ENST00000461654 ARHGEF1Q92888 912 aaKnown RBP19.52■□□□□ 0.72
TMEM39A-203ENST00000461654 ZNF428Q96B54 188 aa19.52■□□□□ 0.72
TMEM39A-203ENST00000461654 GTF3C3Q9Y5Q9 886 aa19.52■□□□□ 0.72
TMEM39A-203ENST00000461654 NLGN1Q8N2Q7 840 aa19.51■□□□□ 0.71
TMEM39A-203ENST00000461654 CRKLP46109 303 aaKnown RBP19.5■□□□□ 0.71
TMEM39A-203ENST00000461654 GPR162Q16538 588 aa19.5■□□□□ 0.71
TMEM39A-203ENST00000461654 VSIG10Q8N0Z9 540 aa19.5■□□□□ 0.71
TMEM39A-203ENST00000461654 BTBD11A6QL63 1104 aa19.49■□□□□ 0.71
TMEM39A-203ENST00000461654 RRP1P56182 461 aaKnown RBP19.49■□□□□ 0.71
TMEM39A-203ENST00000461654 INTS5Q6P9B9 1019 aaKnown RBP19.49■□□□□ 0.71
TMEM39A-203ENST00000461654 MIS18AQ9NYP9 233 aa19.49■□□□□ 0.71
TMEM39A-203ENST00000461654 RNF123Q5XPI4 1314 aa19.49■□□□□ 0.71
TMEM39A-203ENST00000461654 RFC4P35249 363 aa19.48■□□□□ 0.71
TMEM39A-203ENST00000461654 SLC39A6Q13433 755 aa19.48■□□□□ 0.71
TMEM39A-203ENST00000461654 TWISTNBQ3B726 338 aaPredicted RBP19.48■□□□□ 0.71
TMEM39A-203ENST00000461654 CYP19A1P11511 503 aaPredicted RBP19.47■□□□□ 0.71
TMEM39A-203ENST00000461654 GYS1P13807 737 aa19.47■□□□□ 0.71
TMEM39A-203ENST00000461654 CANXP27824 592 aaKnown RBP19.47■□□□□ 0.71
TMEM39A-203ENST00000461654 RARSP54136 660 aaKnown RBP19.47■□□□□ 0.71
TMEM39A-203ENST00000461654 DNAJC10Q8IXB1 793 aa19.47■□□□□ 0.71
TMEM39A-203ENST00000461654 TJP1Q07157 1748 aa19.47■□□□□ 0.71
TMEM39A-203ENST00000461654 MYH14Q7Z406 1995 aaKnown RBP19.46■□□□□ 0.71
TMEM39A-203ENST00000461654 KCPQ6ZWJ8 1503 aa19.46■□□□□ 0.71
TMEM39A-203ENST00000461654 MMP10P09238 476 aa19.46■□□□□ 0.71
TMEM39A-203ENST00000461654 ALDH1L2Q3SY69 923 aa19.46■□□□□ 0.71
TMEM39A-203ENST00000461654 ELL2O00472 640 aaPredicted RBP19.45■□□□□ 0.7
TMEM39A-203ENST00000461654 GRIN3BO60391 1043 aa19.45■□□□□ 0.7
TMEM39A-203ENST00000461654 FKBP8Q14318 412 aa19.45■□□□□ 0.7
TMEM39A-203ENST00000461654 C8orf58Q8NAV2 365 aa19.45■□□□□ 0.7
TMEM39A-203ENST00000461654 CHMP4AQ9BY43 222 aa19.45■□□□□ 0.7
TMEM39A-203ENST00000461654 SMC4Q9NTJ3 1288 aa19.45■□□□□ 0.7
TMEM39A-203ENST00000461654 CCDC87Q9NVE4 849 aa19.45■□□□□ 0.7
TMEM39A-203ENST00000461654 SOS1Q07889 1333 aaPredicted RBP19.45■□□□□ 0.7
TMEM39A-203ENST00000461654 VIRMAQ69YN4 1812 aaKnown RBP19.44■□□□□ 0.7
TMEM39A-203ENST00000461654 VAMP4O75379 141 aa19.44■□□□□ 0.7
TMEM39A-203ENST00000461654 ZNF790Q6PG37 636 aa19.44■□□□□ 0.7
TMEM39A-203ENST00000461654 BCAR3O75815 825 aa19.43■□□□□ 0.7
TMEM39A-203ENST00000461654 TTC5Q8N0Z6 440 aa19.43■□□□□ 0.7
TMEM39A-203ENST00000461654 USP42Q9H9J4 1324 aaKnown RBP19.43■□□□□ 0.7
TMEM39A-203ENST00000461654 YBX3P16989 372 aaKnown RBP eCLIP19.42■□□□□ 0.7
TMEM39A-203ENST00000461654 TSPYL6Q8N831 410 aa19.42■□□□□ 0.7
TMEM39A-203ENST00000461654 TEX13AQ9BXU3 409 aaPredicted RBP19.42■□□□□ 0.7
TMEM39A-203ENST00000461654 UBR2Q8IWV8 1755 aa19.42■□□□□ 0.7
TMEM39A-203ENST00000461654 PELP1Q8IZL8 1130 aaKnown RBP19.41■□□□□ 0.7
TMEM39A-203ENST00000461654 SSH1Q8WYL5 1049 aa19.41■□□□□ 0.7
TMEM39A-203ENST00000461654 ZNF496Q96IT1 587 aaPredicted RBP19.41■□□□□ 0.7
TMEM39A-203ENST00000461654 STARD3NLO95772 234 aa19.4■□□□□ 0.7
TMEM39A-203ENST00000461654 TGFB2P61812 414 aa19.4■□□□□ 0.7
TMEM39A-203ENST00000461654 IRX6P78412 446 aaPredicted RBP19.4■□□□□ 0.7
TMEM39A-203ENST00000461654 ERICH6BQ5W0A0 696 aa19.4■□□□□ 0.7
TMEM39A-203ENST00000461654 FRAT1Q92837 279 aaPredicted RBP19.4■□□□□ 0.7
TMEM39A-203ENST00000461654 BCL2L13Q9BXK5 485 aa19.4■□□□□ 0.7
TMEM39A-203ENST00000461654 KIF16BQ96L93 1317 aa19.4■□□□□ 0.7
TMEM39A-203ENST00000461654 HEG1Q9ULI3 1381 aa19.4■□□□□ 0.7
TMEM39A-203ENST00000461654 SIPA1L3O60292 1781 aaPredicted RBP19.39■□□□□ 0.7
TMEM39A-203ENST00000461654 IPO8O15397 1037 aaKnown RBP19.39■□□□□ 0.69
TMEM39A-203ENST00000461654 MS4A1P11836 297 aa19.39■□□□□ 0.69
TMEM39A-203ENST00000461654 EIF4A1P60842 406 aaKnown RBP19.39■□□□□ 0.69
TMEM39A-203ENST00000461654 SRP68Q9UHB9 627 aaKnown RBP19.39■□□□□ 0.69
TMEM39A-203ENST00000461654 C4AP0C0L4 1744 aa19.39■□□□□ 0.69
TMEM39A-203ENST00000461654 CHD4Q14839 1912 aa19.39■□□□□ 0.69
TMEM39A-203ENST00000461654 PLIN1O60240 522 aa19.38■□□□□ 0.69
TMEM39A-203ENST00000461654 HOXB7P09629 217 aa19.38■□□□□ 0.69
TMEM39A-203ENST00000461654 TM4SF1P30408 202 aa19.38■□□□□ 0.69
TMEM39A-203ENST00000461654 KRT24Q2M2I5 525 aa19.38■□□□□ 0.69
TMEM39A-203ENST00000461654 FMNL2Q96PY5 1086 aa19.38■□□□□ 0.69
TMEM39A-203ENST00000461654 PARP3Q9Y6F1 533 aa19.38■□□□□ 0.69
TMEM39A-203ENST00000461654 ZPR1O75312 459 aa19.37■□□□□ 0.69
TMEM39A-203ENST00000461654 CCDC30Q5VVM6 783 aa19.37■□□□□ 0.69
TMEM39A-203ENST00000461654 ZKSCAN2Q63HK3 967 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms