RNA–Protein interactions for RNA: ENST00000461221.5

BRCA1-205, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 5,693 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-205ENST00000461221 RNF41Q9H4P4 317 aaPredicted RBP10.39□□□□□ -0.75
BRCA1-205ENST00000461221 DDX19AQ9NUU7 478 aaKnown RBP10.39□□□□□ -0.75
BRCA1-205ENST00000461221 ZNF652Q9Y2D9 606 aa10.39□□□□□ -0.75
BRCA1-205ENST00000461221 TMEM87AQ8NBN3 555 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 FBF1Q8TES7 1133 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 LRRC27Q9C0I9 530 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 CCDC194A0A1B0GVG4 234 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 SSRP1Q08945 709 aaKnown RBP10.38□□□□□ -0.75
BRCA1-205ENST00000461221 DAAM2Q86T65 1068 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 CNNM3Q8NE01 707 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 CCDC12Q8WUD4 166 aaPredicted RBP10.38□□□□□ -0.75
BRCA1-205ENST00000461221 IQCA1Q86XH1 822 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 SLF2Q8IX21 1173 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 CCDC155Q8N6L0 562 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 CALML4Q96GE6 196 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 NAPBQ9H115 298 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 CCDC172P0C7W6 258 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 DRC1Q96MC2 740 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 FGD6Q6ZV73 1430 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 CKAP4Q07065 602 aaKnown RBP10.38□□□□□ -0.75
BRCA1-205ENST00000461221 CCDC40Q4G0X9 1142 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 PLVAPQ9BX97 442 aa10.38□□□□□ -0.75
BRCA1-205ENST00000461221 GOLIM4O00461 696 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 HSF2BPO75031 334 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 STARD3NLO95772 234 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 IL1RAPL2Q9NP60 686 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 ABCF2Q9UG63 623 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 DNA2P51530 1060 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 STX1AQ16623 288 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 CCDC96Q2M329 555 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 SLC12A7Q9Y666 1083 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 PRKCSHP14314 528 aaPredicted RBP10.37□□□□□ -0.75
BRCA1-205ENST00000461221 ZNF444Q8N0Y2 327 aaPredicted RBP10.37□□□□□ -0.75
BRCA1-205ENST00000461221 RAB3IL1Q8TBN0 382 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 MX1P20591 662 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 MCM5P33992 734 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 KANK3Q6NY19 840 aa10.37□□□□□ -0.75
BRCA1-205ENST00000461221 HSPA4P34932 840 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 MAP3K12Q12852 859 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 PRPF40BQ6NWY9 871 aaKnown RBP10.36□□□□□ -0.75
BRCA1-205ENST00000461221 TXNDC2Q86VQ3 553 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 LMAN1P49257 510 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 NLRP5P59047 1200 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 CYB5RLQ6IPT4 315 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 PRAM1Q96QH2 718 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 MROH2BQ7Z745 1585 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 SPDYE4A6NLX3 237 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 MINDY4BA8MYZ0 360 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 GTF2F1P35269 517 aaKnown RBP eCLIP10.36□□□□□ -0.754e-8■■■□□ 16.5
BRCA1-205ENST00000461221 FERMT3Q86UX7 667 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 DZIP1Q86YF9 867 aaKnown RBP10.36□□□□□ -0.75
BRCA1-205ENST00000461221 FAM69CQ0P6D2 419 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 PRPF4BQ13523 1007 aaKnown RBP10.36□□□□□ -0.75
BRCA1-205ENST00000461221 NUTM1Q86Y26 1132 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 TCP11L1Q9NUJ3 509 aa10.36□□□□□ -0.75
BRCA1-205ENST00000461221 SPINK5Q9NQ38 1064 aaPredicted RBP10.35□□□□□ -0.75
BRCA1-205ENST00000461221 A0A1W2PRG0 241 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 HFM1A2PYH4 1435 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 GOLGA8AA7E2F4 631 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 GOLGA8BA8MQT2 603 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 PRC1O43663 620 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 CAVIN2O95810 425 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 KIAA0753Q2KHM9 967 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 CATIPQ7Z7H3 387 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 CPLX3Q8WVH0 158 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 STMN4Q9H169 189 aaPredicted RBP10.35□□□□□ -0.75
BRCA1-205ENST00000461221 NOP2P46087 812 aaKnown RBP10.35□□□□□ -0.75
BRCA1-205ENST00000461221 SNW1Q13573 536 aaKnown RBP10.35□□□□□ -0.75
BRCA1-205ENST00000461221 CCDC6Q16204 474 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 GPATCH11Q8N954 259 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 CDK19Q9BWU1 502 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 KIF4AO95239 1232 aa10.35□□□□□ -0.75
BRCA1-205ENST00000461221 IQCGQ9H095 443 aaKnown RBP10.35□□□□□ -0.75
BRCA1-205ENST00000461221 SLC5A1P13866 664 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 MAPK8IP2Q13387 824 aaPredicted RBP10.34□□□□□ -0.75
BRCA1-205ENST00000461221 CFAP70Q5T0N1 1121 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 TMC6Q7Z403 805 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 TTC12Q9H892 705 aaPredicted RBP10.34□□□□□ -0.75
BRCA1-205ENST00000461221 RASAL2Q9UJF2 1139 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 FCHSD2O94868 740 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 TCERG1LQ5VWI1 586 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 FSIP1Q8NA03 581 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 POLA1P09884 1462 aaPredicted RBP10.34□□□□□ -0.75
BRCA1-205ENST00000461221 ZNF213O14771 459 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 IPO4Q8TEX9 1081 aaKnown RBP10.34□□□□□ -0.75
BRCA1-205ENST00000461221 PUS7Q96PZ0 661 aaKnown RBP10.34□□□□□ -0.75
BRCA1-205ENST00000461221 PAXBP1Q9Y5B6 917 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 ZWINTO95229 277 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 PRPHP41219 470 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 DDX46Q7L014 1031 aaKnown RBP10.34□□□□□ -0.75
BRCA1-205ENST00000461221 OSCARQ8IYS5 282 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 DNAAF4Q8WXU2 420 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 ANAPC4Q9UJX5 808 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 RTEL1-TNFRSF6BF6WH68 1400 aa10.34□□□□□ -0.75
BRCA1-205ENST00000461221 KIF5BP33176 963 aa10.33□□□□□ -0.76
BRCA1-205ENST00000461221 CHMP4BP1P59074 171 aa10.33□□□□□ -0.76
BRCA1-205ENST00000461221 MPHOSPH6Q99547 160 aaKnown RBP10.33□□□□□ -0.76
BRCA1-205ENST00000461221 CCDC77Q9BR77 488 aa10.33□□□□□ -0.76
BRCA1-205ENST00000461221 RANBP6O60518 1105 aaKnown RBP10.33□□□□□ -0.76
BRCA1-205ENST00000461221 MXRA7P84157 204 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms