RNA–Protein interactions for RNA: ENST00000460168.1

HERC4-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,215 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-207ENST00000460168 DDX54Q8TDD1 881 aaKnown RBP13.02□□□□□ -0.33
HERC4-207ENST00000460168 ABCC4O15439 1325 aa13.02□□□□□ -0.33
HERC4-207ENST00000460168 IGSF3O75054 1194 aa13.01□□□□□ -0.33
HERC4-207ENST00000460168 HOXB7P09629 217 aa13.01□□□□□ -0.33
HERC4-207ENST00000460168 BRPF3Q9ULD4 1205 aa13.01□□□□□ -0.33
HERC4-207ENST00000460168 HSP90AA1P07900 732 aaKnown RBP13.01□□□□□ -0.33
HERC4-207ENST00000460168 EIF2S2P20042 333 aaKnown RBP13.01□□□□□ -0.33
HERC4-207ENST00000460168 CABP4P57796 275 aa13.01□□□□□ -0.33
HERC4-207ENST00000460168 KDM2BQ8NHM5 1336 aa13.01□□□□□ -0.33
HERC4-207ENST00000460168 RGS3P49796 1198 aa13□□□□□ -0.33
HERC4-207ENST00000460168 ZNF790Q6PG37 636 aa13□□□□□ -0.33
HERC4-207ENST00000460168 GTF3C5Q9Y5Q8 519 aaPredicted RBP13□□□□□ -0.33
HERC4-207ENST00000460168 MRC1P22897 1456 aa13□□□□□ -0.33
HERC4-207ENST00000460168 JCADQ9P266 1359 aa13□□□□□ -0.33
HERC4-207ENST00000460168 SLC39A6Q13433 755 aa13□□□□□ -0.33
HERC4-207ENST00000460168 G2E3Q7L622 706 aa12.99□□□□□ -0.33
HERC4-207ENST00000460168 TTC5Q8N0Z6 440 aa12.99□□□□□ -0.33
HERC4-207ENST00000460168 PCDHB15Q9Y5E8 787 aa12.99□□□□□ -0.33
HERC4-207ENST00000460168 CACNA1FO60840 1977 aa12.99□□□□□ -0.33
HERC4-207ENST00000460168 SHANK3Q9BYB0 1731 aa12.99□□□□□ -0.33
HERC4-207ENST00000460168 FLIIQ13045 1269 aa12.98□□□□□ -0.33
HERC4-207ENST00000460168 FKBP5Q13451 457 aaPredicted RBP12.98□□□□□ -0.33
HERC4-207ENST00000460168 GIGYF1O75420 1035 aaPredicted RBP12.98□□□□□ -0.33
HERC4-207ENST00000460168 ZBTB40Q9NUA8 1239 aa12.98□□□□□ -0.33
HERC4-207ENST00000460168 KCNG1Q9UIX4 513 aa12.98□□□□□ -0.33
HERC4-207ENST00000460168 RGS12O14924 1447 aa12.98□□□□□ -0.33
HERC4-207ENST00000460168 IGHDP01880 384 aa12.97□□□□□ -0.33
HERC4-207ENST00000460168 NRAPQ86VF7 1730 aa12.97□□□□□ -0.33
HERC4-207ENST00000460168 ERVV-2B6SEH9 535 aa12.97□□□□□ -0.33
HERC4-207ENST00000460168 NKX1-1Q15270 411 aaPredicted RBP12.97□□□□□ -0.33
HERC4-207ENST00000460168 SLC4A10Q6U841 1118 aa12.97□□□□□ -0.33
HERC4-207ENST00000460168 CHPF2Q9P2E5 772 aa12.97□□□□□ -0.33
HERC4-207ENST00000460168 DISP2A7MBM2 1401 aa12.97□□□□□ -0.33
HERC4-207ENST00000460168 HEG1Q9ULI3 1381 aa12.97□□□□□ -0.33
HERC4-207ENST00000460168 NWD2Q9ULI1 1742 aa12.96□□□□□ -0.33
HERC4-207ENST00000460168 ZBTB7BO15156 539 aaPredicted RBP12.96□□□□□ -0.33
HERC4-207ENST00000460168 INTS3Q68E01 1043 aaKnown RBP12.96□□□□□ -0.33
HERC4-207ENST00000460168 RWDD1Q9H446 243 aaPredicted RBP12.96□□□□□ -0.33
HERC4-207ENST00000460168 F6X3S4 739 aa12.96□□□□□ -0.34
HERC4-207ENST00000460168 C8orf37Q96NL8 207 aa12.96□□□□□ -0.34
HERC4-207ENST00000460168 SLIT2O94813 1529 aa12.95□□□□□ -0.34
HERC4-207ENST00000460168 SPATA31A1Q5TZJ5 1347 aa12.95□□□□□ -0.34
HERC4-207ENST00000460168 PRAMEF22A3QJZ6 481 aa12.95□□□□□ -0.34
HERC4-207ENST00000460168 EXOC5O00471 708 aa12.95□□□□□ -0.34
HERC4-207ENST00000460168 ZNF496Q96IT1 587 aaPredicted RBP12.95□□□□□ -0.34
HERC4-207ENST00000460168 NGLY1Q96IV0 654 aa12.95□□□□□ -0.34
HERC4-207ENST00000460168 DBF4Q9UBU7 674 aaPredicted RBP12.95□□□□□ -0.34
HERC4-207ENST00000460168 GRIPAP1Q4V328 841 aa12.94□□□□□ -0.34
HERC4-207ENST00000460168 FMNL2Q96PY5 1086 aa12.94□□□□□ -0.34
HERC4-207ENST00000460168 PHAXQ9H814 394 aaKnown RBP12.94□□□□□ -0.34
HERC4-207ENST00000460168 THRAP3Q9Y2W1 955 aaKnown RBP12.94□□□□□ -0.34
HERC4-207ENST00000460168 SPATA31A6Q5VVP1 1343 aa12.94□□□□□ -0.34
HERC4-207ENST00000460168 ARID3AQ99856 593 aa12.94□□□□□ -0.34
HERC4-207ENST00000460168 CDCA7Q9BWT1 371 aaPredicted RBP12.94□□□□□ -0.34
HERC4-207ENST00000460168 WNK3Q9BYP7 1800 aa12.94□□□□□ -0.34
HERC4-207ENST00000460168 ANXA1P04083 346 aa12.93□□□□□ -0.34
HERC4-207ENST00000460168 CCT4P50991 539 aaKnown RBP12.93□□□□□ -0.34
HERC4-207ENST00000460168 SNRPA1P09661 255 aaKnown RBP12.93□□□□□ -0.34
HERC4-207ENST00000460168 C1orf115Q9H7X2 142 aa12.93□□□□□ -0.34
HERC4-207ENST00000460168 TMOD3Q9NYL9 352 aa12.93□□□□□ -0.34
HERC4-207ENST00000460168 TNS2Q63HR2 1409 aa12.93□□□□□ -0.34
HERC4-207ENST00000460168 SPATA31A5Q5VU36 1347 aa12.93□□□□□ -0.34
HERC4-207ENST00000460168 SPATA31A7Q8IWB4 1347 aa12.93□□□□□ -0.34
HERC4-207ENST00000460168 C5P01031 1676 aa12.92□□□□□ -0.34
HERC4-207ENST00000460168 SKAP1Q86WV1 359 aa12.92□□□□□ -0.34
HERC4-207ENST00000460168 UNC5CLQ8IV45 518 aa12.92□□□□□ -0.34
HERC4-207ENST00000460168 PRDM10Q9NQV6 1147 aa12.92□□□□□ -0.34
HERC4-207ENST00000460168 TOGARAM1Q9Y4F4 1720 aa12.92□□□□□ -0.34
HERC4-207ENST00000460168 HSPA1LP34931 641 aa12.92□□□□□ -0.34
HERC4-207ENST00000460168 DDB1Q16531 1140 aa12.92□□□□□ -0.34
HERC4-207ENST00000460168 CLSTN1O94985 981 aa12.91□□□□□ -0.34
HERC4-207ENST00000460168 HDAC1Q13547 482 aaPredicted RBP12.91□□□□□ -0.34
HERC4-207ENST00000460168 ZNF830Q96NB3 372 aaPredicted RBP12.91□□□□□ -0.34
HERC4-207ENST00000460168 PROSER3Q2NL68 480 aa12.9□□□□□ -0.34
HERC4-207ENST00000460168 HYPKQ9NX55 129 aa12.9□□□□□ -0.34
HERC4-207ENST00000460168 KAT6BQ8WYB5 2073 aa12.9□□□□□ -0.34
HERC4-207ENST00000460168 PTCD1O75127 700 aaKnown RBP12.9□□□□□ -0.34
HERC4-207ENST00000460168 MEX3CQ5U5Q3 659 aaKnown RBP12.9□□□□□ -0.34
HERC4-207ENST00000460168 RGS22Q8NE09 1264 aa12.9□□□□□ -0.34
HERC4-207ENST00000460168 MEIS3Q99687 375 aa12.9□□□□□ -0.34
HERC4-207ENST00000460168 DDX21Q9NR30 783 aaKnown RBP eCLIP12.9□□□□□ -0.34
HERC4-207ENST00000460168 PXDNLA1KZ92 1463 aa12.9□□□□□ -0.34
HERC4-207ENST00000460168 LRP6O75581 1613 aa12.89□□□□□ -0.35
HERC4-207ENST00000460168 BCL9LQ86UU0 1499 aa12.89□□□□□ -0.35
HERC4-207ENST00000460168 PI4KAP2A4QPH2 592 aa12.89□□□□□ -0.35
HERC4-207ENST00000460168 BARGINQ6ZT62 677 aa12.89□□□□□ -0.35
HERC4-207ENST00000460168 PI4KAP1Q8N8J0 262 aa12.89□□□□□ -0.35
HERC4-207ENST00000460168 SYTL4Q96C24 671 aaPredicted RBP12.89□□□□□ -0.35
HERC4-207ENST00000460168 USP16Q9Y5T5 823 aa12.89□□□□□ -0.35
HERC4-207ENST00000460168 MYL6BP14649 208 aa12.89□□□□□ -0.35
HERC4-207ENST00000460168 PAPPAQ13219 1627 aa12.89□□□□□ -0.35
HERC4-207ENST00000460168 UBR2Q8IWV8 1755 aa12.88□□□□□ -0.35
HERC4-207ENST00000460168 FNBP4Q8N3X1 1017 aaPredicted RBP12.88□□□□□ -0.35
HERC4-207ENST00000460168 DNAAF4Q8WXU2 420 aa12.88□□□□□ -0.35
HERC4-207ENST00000460168 PDCL3Q9H2J4 239 aa12.88□□□□□ -0.35
HERC4-207ENST00000460168 USP21Q9UK80 565 aa12.88□□□□□ -0.35
HERC4-207ENST00000460168 DDX58O95786 925 aaKnown RBP12.88□□□□□ -0.35
HERC4-207ENST00000460168 AIMP1Q12904 312 aaKnown RBP12.88□□□□□ -0.35
HERC4-207ENST00000460168 VPS72Q15906 364 aa12.88□□□□□ -0.35
HERC4-207ENST00000460168 PIGBQ92521 554 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms