RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 PELP1Q8IZL8 1130 aaKnown RBP21.35■■□□□ 1.01
COL7A1-203ENST00000459756 SRP68Q9UHB9 627 aaKnown RBP21.35■■□□□ 1.01
COL7A1-203ENST00000459756 DLG5Q8TDM6 1919 aa21.35■■□□□ 1.01
COL7A1-203ENST00000459756 ZPR1O75312 459 aa21.34■■□□□ 1.01
COL7A1-203ENST00000459756 COL15A1P39059 1388 aa21.34■■□□□ 1.01
COL7A1-203ENST00000459756 KCNQ3O43525 872 aa21.33■■□□□ 1.01
COL7A1-203ENST00000459756 PARP3Q9Y6F1 533 aa21.33■■□□□ 1.01
COL7A1-203ENST00000459756 CHD4Q14839 1912 aa21.32■■□□□ 1
COL7A1-203ENST00000459756 CANXP27824 592 aaKnown RBP21.32■■□□□ 1
COL7A1-203ENST00000459756 FKBP8Q14318 412 aa21.32■■□□□ 1
COL7A1-203ENST00000459756 TAF7Q15545 349 aaPredicted RBP21.32■■□□□ 1
COL7A1-203ENST00000459756 PRKRIP1Q9H875 184 aaPredicted RBP21.32■■□□□ 1
COL7A1-203ENST00000459756 NARFQ9UHQ1 456 aa21.32■■□□□ 1
COL7A1-203ENST00000459756 KIF13BQ9NQT8 1826 aa21.31■■□□□ 1
COL7A1-203ENST00000459756 GRIN3BO60391 1043 aa21.3■■□□□ 1
COL7A1-203ENST00000459756 YBX3P16989 372 aaKnown RBP eCLIP21.3■■□□□ 1
COL7A1-203ENST00000459756 EIF5P55010 431 aaKnown RBP21.3■■□□□ 1
COL7A1-203ENST00000459756 USPL1Q5W0Q7 1092 aa21.3■■□□□ 1
COL7A1-203ENST00000459756 A0A087WZG4 1122 aa21.29■■□□□ 1
COL7A1-203ENST00000459756 C10orf71Q711Q0 1435 aa21.29■■□□□ 1
COL7A1-203ENST00000459756 SNRPA1P09661 255 aaKnown RBP21.28■■□□□ 1
COL7A1-203ENST00000459756 PNISRQ8TF01 805 aaKnown RBP21.28■■□□□ 1
COL7A1-203ENST00000459756 TM4SF1P30408 202 aa21.27■■□□□ 1
COL7A1-203ENST00000459756 IL6STP40189 918 aaPredicted RBP21.27■■□□□ 1
COL7A1-203ENST00000459756 TGFB2P61812 414 aa21.27■■□□□ 1
COL7A1-203ENST00000459756 WDR43Q15061 677 aaKnown RBP eCLIP21.27■■□□□ 1
COL7A1-203ENST00000459756 DDR1Q08345 913 aa21.26■□□□□ 0.99
COL7A1-203ENST00000459756 A1BGP04217 495 aa21.25■□□□□ 0.99
COL7A1-203ENST00000459756 NPM2Q86SE8 214 aaKnown RBP21.25■□□□□ 0.99
COL7A1-203ENST00000459756 MIS18AQ9NYP9 233 aa21.25■□□□□ 0.99
COL7A1-203ENST00000459756 USP16Q9Y5T5 823 aa21.25■□□□□ 0.99
COL7A1-203ENST00000459756 PXDNLA1KZ92 1463 aa21.25■□□□□ 0.99
COL7A1-203ENST00000459756 KIAA1551Q9HCM1 1747 aa21.24■□□□□ 0.99
COL7A1-203ENST00000459756 KDM3BQ7LBC6 1761 aa21.24■□□□□ 0.99
COL7A1-203ENST00000459756 POLRMTO00411 1230 aaKnown RBP21.24■□□□□ 0.99
COL7A1-203ENST00000459756 RIPK4P57078 832 aa21.24■□□□□ 0.99
COL7A1-203ENST00000459756 LMOD3Q0VAK6 560 aa21.24■□□□□ 0.99
COL7A1-203ENST00000459756 THUMPD2Q9BTF0 503 aaKnown RBP21.24■□□□□ 0.99
COL7A1-203ENST00000459756 BCL2L12Q9HB09 334 aa21.24■□□□□ 0.99
COL7A1-203ENST00000459756 TMPOP42166 694 aaKnown RBP21.23■□□□□ 0.99
COL7A1-203ENST00000459756 NFIXQ14938 502 aa21.23■□□□□ 0.99
COL7A1-203ENST00000459756 ZNF330Q9Y3S2 320 aaPredicted RBP21.23■□□□□ 0.99
COL7A1-203ENST00000459756 PRAMEF22A3QJZ6 481 aa21.22■□□□□ 0.99
COL7A1-203ENST00000459756 ZNF316A6NFI3 1004 aaPredicted RBP21.22■□□□□ 0.99
COL7A1-203ENST00000459756 RUNDC1Q96C34 613 aa21.22■□□□□ 0.99
COL7A1-203ENST00000459756 SCN7AQ01118 1682 aa21.21■□□□□ 0.99
COL7A1-203ENST00000459756 N4BP2Q86UW6 1770 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-203ENST00000459756 CCDC146Q8IYE0 955 aa21.21■□□□□ 0.99
COL7A1-203ENST00000459756 ADAMTS8Q9UP79 889 aa21.21■□□□□ 0.99
COL7A1-203ENST00000459756 A0A0G2JLW4 131 aa21.2■□□□□ 0.98
COL7A1-203ENST00000459756 TBC1D2BQ9UPU7 963 aa21.2■□□□□ 0.98
COL7A1-203ENST00000459756 LAMB4A4D0S4 1761 aa21.19■□□□□ 0.98
COL7A1-203ENST00000459756 DPEP1P16444 411 aa21.19■□□□□ 0.98
COL7A1-203ENST00000459756 EIF4A1P60842 406 aaKnown RBP21.19■□□□□ 0.98
COL7A1-203ENST00000459756 WWC3Q9ULE0 1092 aa21.19■□□□□ 0.98
COL7A1-203ENST00000459756 NRXN2Q9P2S2 1712 aa21.18■□□□□ 0.98
COL7A1-203ENST00000459756 AFDNP55196 1824 aaKnown RBP21.18■□□□□ 0.98
COL7A1-203ENST00000459756 GIGYF1O75420 1035 aaPredicted RBP21.18■□□□□ 0.98
COL7A1-203ENST00000459756 BABAM1Q9NWV8 329 aa21.18■□□□□ 0.98
COL7A1-203ENST00000459756 SERPINB2P05120 415 aa21.17■□□□□ 0.98
COL7A1-203ENST00000459756 DZIP3Q86Y13 1208 aaKnown RBP21.17■□□□□ 0.98
COL7A1-203ENST00000459756 TSPYL4Q9UJ04 414 aa21.17■□□□□ 0.98
COL7A1-203ENST00000459756 RRP7AQ9Y3A4 280 aaKnown RBP21.17■□□□□ 0.98
COL7A1-203ENST00000459756 BRCA1P38398 1863 aaKnown RBP21.16■□□□□ 0.98
COL7A1-203ENST00000459756 NBPF26B4DH59 902 aa21.16■□□□□ 0.98
COL7A1-203ENST00000459756 CAMTA2O94983 1202 aa21.16■□□□□ 0.98
COL7A1-203ENST00000459756 PIP4K2AP48426 406 aaPredicted RBP21.16■□□□□ 0.98
COL7A1-203ENST00000459756 TBC1D9BQ66K14 1250 aa21.16■□□□□ 0.98
COL7A1-203ENST00000459756 NBPF10Q6P3W6 841 aaKnown RBP21.16■□□□□ 0.98
COL7A1-203ENST00000459756 NBPF15Q8N660 670 aa21.16■□□□□ 0.98
COL7A1-203ENST00000459756 ZNF784Q8NCA9 323 aaPredicted RBP21.16■□□□□ 0.98
COL7A1-203ENST00000459756 BCORQ6W2J9 1755 aa21.15■□□□□ 0.98
COL7A1-203ENST00000459756 KCNA3P22001 575 aa21.15■□□□□ 0.98
COL7A1-203ENST00000459756 NEUROD2Q15784 382 aa21.15■□□□□ 0.98
COL7A1-203ENST00000459756 BICDL1Q6ZP65 573 aa21.15■□□□□ 0.98
COL7A1-203ENST00000459756 CARMIL3Q8ND23 1372 aa21.14■□□□□ 0.98
COL7A1-203ENST00000459756 PIM2Q9P1W9 311 aa21.14■□□□□ 0.97
COL7A1-203ENST00000459756 BCS1LQ9Y276 419 aa21.14■□□□□ 0.97
COL7A1-203ENST00000459756 RGL2O15211 777 aa21.13■□□□□ 0.97
COL7A1-203ENST00000459756 CLEC4GQ6UXB4 293 aa21.13■□□□□ 0.97
COL7A1-203ENST00000459756 SETDB2Q96T68 719 aa21.13■□□□□ 0.97
COL7A1-203ENST00000459756 TRIM35Q9UPQ4 493 aa21.13■□□□□ 0.97
COL7A1-203ENST00000459756 ZNF652Q9Y2D9 606 aa21.13■□□□□ 0.97
COL7A1-203ENST00000459756 CHRNA5P30532 468 aa21.11■□□□□ 0.97
COL7A1-203ENST00000459756 DALRD3Q5D0E6 543 aaKnown RBP21.11■□□□□ 0.97
COL7A1-203ENST00000459756 ARFGEF1Q9Y6D6 1849 aa21.1■□□□□ 0.97
COL7A1-203ENST00000459756 ERBB4Q15303 1308 aa21.09■□□□□ 0.97
COL7A1-203ENST00000459756 CHL1O00533 1208 aa21.09■□□□□ 0.97
COL7A1-203ENST00000459756 ANP32CO43423 234 aa21.08■□□□□ 0.97
COL7A1-203ENST00000459756 APAF1O14727 1248 aa21.07■□□□□ 0.96
COL7A1-203ENST00000459756 PRR5LQ6MZQ0 368 aa21.07■□□□□ 0.96
COL7A1-203ENST00000459756 CNBD1Q8NA66 436 aa21.07■□□□□ 0.96
COL7A1-203ENST00000459756 BRIP1Q9BX63 1249 aa21.07■□□□□ 0.96
COL7A1-203ENST00000459756 PDZRN3Q9UPQ7 1066 aa21.07■□□□□ 0.96
COL7A1-203ENST00000459756 DLEC1Q9Y238 1755 aa21.07■□□□□ 0.96
COL7A1-203ENST00000459756 H0YIN7 160 aa21.06■□□□□ 0.96
COL7A1-203ENST00000459756 NPHP1O15259 732 aa21.06■□□□□ 0.96
COL7A1-203ENST00000459756 PDE6BP35913 854 aa21.06■□□□□ 0.96
COL7A1-203ENST00000459756 ARHGAP27Q6ZUM4 889 aa21.06■□□□□ 0.96
COL7A1-203ENST00000459756 C2CD5Q86YS7 1000 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms