RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, human

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-208	ENST00000457745	SKAP1	Q86WV1	359 aa		11.23	□□□□□ -0.61
RIF1-208	ENST00000457745	TMEM57	Q8N5G2	664 aa		11.23	□□□□□ -0.61
RIF1-208	ENST00000457745	BABAM1	Q9NWV8	329 aa		11.23	□□□□□ -0.61
RIF1-208	ENST00000457745	CCDC9	Q9Y3X0	531 aa	Known RBP	11.23	□□□□□ -0.61
RIF1-208	ENST00000457745	BRWD3	Q6RI45	1802 aa		11.23	□□□□□ -0.61
RIF1-208	ENST00000457745	GIGYF1	O75420	1035 aa	Predicted RBP	11.22	□□□□□ -0.61
RIF1-208	ENST00000457745	PIP4K2A	P48426	406 aa	Predicted RBP	11.22	□□□□□ -0.61
RIF1-208	ENST00000457745	BRPF1	P55201	1214 aa	Predicted RBP	11.22	□□□□□ -0.61
RIF1-208	ENST00000457745	FAM182B	Q5T319	152 aa		11.22	□□□□□ -0.61
RIF1-208	ENST00000457745	ZKSCAN2	Q63HK3	967 aa		11.22	□□□□□ -0.61
RIF1-208	ENST00000457745	ZNF790	Q6PG37	636 aa		11.22	□□□□□ -0.61
RIF1-208	ENST00000457745	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.22	□□□□□ -0.61
RIF1-208	ENST00000457745	PIGB	Q92521	554 aa		11.22	□□□□□ -0.61
RIF1-208	ENST00000457745	ABCC4	O15439	1325 aa		11.21	□□□□□ -0.61
RIF1-208	ENST00000457745	CABP4	P57796	275 aa		11.21	□□□□□ -0.61
RIF1-208	ENST00000457745	MEX3C	Q5U5Q3	659 aa	Known RBP	11.21	□□□□□ -0.61
RIF1-208	ENST00000457745	ATF7IP	Q6VMQ6	1270 aa		11.21	□□□□□ -0.61
RIF1-208	ENST00000457745	SLC4A9	Q96Q91	983 aa		11.21	□□□□□ -0.61
RIF1-208	ENST00000457745	PHAX	Q9H814	394 aa	Known RBP	11.21	□□□□□ -0.61
RIF1-208	ENST00000457745	PPP4R2	Q9NY27	417 aa		11.21	□□□□□ -0.61
RIF1-208	ENST00000457745	CHPF2	Q9P2E5	772 aa		11.21	□□□□□ -0.61
RIF1-208	ENST00000457745	ASAP1	Q9ULH1	1129 aa		11.21	□□□□□ -0.61
RIF1-208	ENST00000457745	BCL9	O00512	1426 aa		11.2	□□□□□ -0.62
RIF1-208	ENST00000457745		F6X3S4	739 aa		11.2	□□□□□ -0.62
RIF1-208	ENST00000457745	EIF2S2	P20042	333 aa	Known RBP	11.2	□□□□□ -0.62
RIF1-208	ENST00000457745	PDE3A	Q14432	1141 aa		11.2	□□□□□ -0.62
RIF1-208	ENST00000457745	PDIA6	Q15084	440 aa		11.2	□□□□□ -0.62
RIF1-208	ENST00000457745	LRP10	Q7Z4F1	713 aa		11.2	□□□□□ -0.62
RIF1-208	ENST00000457745	ACSBG1	Q96GR2	724 aa		11.2	□□□□□ -0.62
RIF1-208	ENST00000457745	THRAP3	Q9Y2W1	955 aa	Known RBP	11.2	□□□□□ -0.62
RIF1-208	ENST00000457745	USP16	Q9Y5T5	823 aa		11.2	□□□□□ -0.62
RIF1-208	ENST00000457745	ERVV-2	B6SEH9	535 aa		11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	EXOC5	O00471	708 aa		11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	KCNQ2	O43526	872 aa		11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	HSP90AB1	P08238	724 aa	Known RBP	11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	CANX	P27824	592 aa	Known RBP	11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	DDB1	Q16531	1140 aa		11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	HDGFL1	Q5TGJ6	251 aa		11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	DZIP1L	Q8IYY4	767 aa	Known RBP	11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	ATG3	Q9NT62	314 aa		11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	KAT6B	Q8WYB5	2073 aa		11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	CACNA1F	O60840	1977 aa		11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	SBF2	Q86WG5	1849 aa		11.19	□□□□□ -0.62
RIF1-208	ENST00000457745	KIF16B	Q96L93	1317 aa		11.18	□□□□□ -0.62
RIF1-208	ENST00000457745	PRIM1	P49642	420 aa	Known RBP	11.18	□□□□□ -0.62
RIF1-208	ENST00000457745	MVP	Q14764	893 aa	Known RBP	11.18	□□□□□ -0.62
RIF1-208	ENST00000457745	GJD4	Q96KN9	370 aa	Predicted RBP	11.18	□□□□□ -0.62
RIF1-208	ENST00000457745	CREBZF	Q9NS37	354 aa		11.18	□□□□□ -0.62
RIF1-208	ENST00000457745	PCDHB15	Q9Y5E8	787 aa		11.18	□□□□□ -0.62
RIF1-208	ENST00000457745	ADCY9	O60503	1353 aa		11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	BTAF1	O14981	1849 aa		11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	NBPF26	B4DH59	902 aa		11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	NBPF14	Q5TI25	921 aa		11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	ERICH6B	Q5W0A0	696 aa		11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	NBPF10	Q6P3W6	841 aa	Known RBP	11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	NBPF15	Q8N660	670 aa		11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	ZNF428	Q96B54	188 aa		11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	RGS17	Q9UGC6	210 aa	Predicted RBP	11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	NHS	Q6T4R5	1651 aa		11.17	□□□□□ -0.62
RIF1-208	ENST00000457745	KDM2B	Q8NHM5	1336 aa		11.16	□□□□□ -0.62
RIF1-208	ENST00000457745	NUP188	Q5SRE5	1749 aa		11.16	□□□□□ -0.62
RIF1-208	ENST00000457745	PTCD1	O75127	700 aa	Known RBP	11.16	□□□□□ -0.62
RIF1-208	ENST00000457745	IGHD	P01880	384 aa		11.16	□□□□□ -0.62
RIF1-208	ENST00000457745	FLII	Q13045	1269 aa		11.16	□□□□□ -0.62
RIF1-208	ENST00000457745	PLCD3	Q8N3E9	789 aa		11.16	□□□□□ -0.62
RIF1-208	ENST00000457745	C1orf115	Q9H7X2	142 aa		11.16	□□□□□ -0.62
RIF1-208	ENST00000457745	HOXB7	P09629	217 aa		11.15	□□□□□ -0.62
RIF1-208	ENST00000457745	CCDC30	Q5VVM6	783 aa		11.15	□□□□□ -0.62
RIF1-208	ENST00000457745	ITPRIP	Q8IWB1	547 aa		11.15	□□□□□ -0.62
RIF1-208	ENST00000457745	DNAJC10	Q8IXB1	793 aa		11.15	□□□□□ -0.62
RIF1-208	ENST00000457745	ARHGAP45	Q92619	1136 aa		11.15	□□□□□ -0.62
RIF1-208	ENST00000457745	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.15	□□□□□ -0.62
RIF1-208	ENST00000457745	TMOD3	Q9NYL9	352 aa		11.15	□□□□□ -0.62
RIF1-208	ENST00000457745	ARFGEF2	Q9Y6D5	1785 aa		11.15	□□□□□ -0.62
RIF1-208	ENST00000457745	MYH14	Q7Z406	1995 aa	Known RBP	11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	CIC	Q96RK0	1608 aa	Predicted RBP	11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	ONECUT3	O60422	494 aa	Predicted RBP	11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	A1BG	P04217	495 aa		11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	SEPT12	Q8IYM1	358 aa		11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	SYTL4	Q96C24	671 aa	Predicted RBP	11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	FMNL2	Q96PY5	1086 aa		11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	QTRT2	Q9H974	415 aa	Known RBP	11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	TRPC5	Q9UL62	973 aa	Predicted RBP	11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	COL5A3	P25940	1745 aa	Predicted RBP	11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	RREB1	Q92766	1687 aa		11.14	□□□□□ -0.63
RIF1-208	ENST00000457745	SOS1	Q07889	1333 aa	Predicted RBP	11.13	□□□□□ -0.63
RIF1-208	ENST00000457745	ATP10D	Q9P241	1426 aa		11.13	□□□□□ -0.63
RIF1-208	ENST00000457745	ZBTB7B	O15156	539 aa	Predicted RBP	11.13	□□□□□ -0.63
RIF1-208	ENST00000457745	KCNQ4	P56696	695 aa		11.13	□□□□□ -0.63
RIF1-208	ENST00000457745	ITPK1	Q13572	414 aa		11.13	□□□□□ -0.63
RIF1-208	ENST00000457745	INTS3	Q68E01	1043 aa	Known RBP	11.13	□□□□□ -0.63
RIF1-208	ENST00000457745	FTSJ3	Q8IY81	847 aa	Known RBP	11.13	□□□□□ -0.63
RIF1-208	ENST00000457745	CCDC136	Q96JN2	1154 aa		11.13	□□□□□ -0.63
RIF1-208	ENST00000457745	API5	Q9BZZ5	524 aa	Known RBP	11.13	□□□□□ -0.63
RIF1-208	ENST00000457745	ZBTB40	Q9NUA8	1239 aa		11.13	□□□□□ -0.63
RIF1-208	ENST00000457745		A0A0G2JS52	829 aa		11.12	□□□□□ -0.63
RIF1-208	ENST00000457745	SNRPA1	P09661	255 aa	Known RBP	11.12	□□□□□ -0.63
RIF1-208	ENST00000457745	MYL6B	P14649	208 aa		11.12	□□□□□ -0.63
RIF1-208	ENST00000457745	MYT1	Q01538	1121 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms