RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 FGFR3P22607 806 aa8.11□□□□□ -1.11
VPS41-209ENST00000457055 SOX11P35716 441 aa8.11□□□□□ -1.11
VPS41-209ENST00000457055 SNRPNP63162 240 aaKnown RBP8.11□□□□□ -1.11
VPS41-209ENST00000457055 C1orf229Q6ZS94 237 aaPredicted RBP8.11□□□□□ -1.11
VPS41-209ENST00000457055 GOLGA6L1Q8N7Z2 621 aa8.11□□□□□ -1.11
VPS41-209ENST00000457055 BNIP3LO60238 219 aa8.1□□□□□ -1.11
VPS41-209ENST00000457055 HSP90B1P14625 803 aaKnown RBP8.1□□□□□ -1.11
VPS41-209ENST00000457055 BRD2P25440 801 aaKnown RBP8.1□□□□□ -1.11
VPS41-209ENST00000457055 SMTNP53814 917 aa8.1□□□□□ -1.11
VPS41-209ENST00000457055 FIGNL1Q6PIW4 674 aa8.1□□□□□ -1.11
VPS41-209ENST00000457055 FAM9AQ8IZU1 332 aaPredicted RBP8.1□□□□□ -1.11
VPS41-209ENST00000457055 EDARADDQ8WWZ3 215 aa8.1□□□□□ -1.11
VPS41-209ENST00000457055 NIFKQ9BYG3 293 aaKnown RBP8.1□□□□□ -1.11
VPS41-209ENST00000457055 RRAGCQ9HB90 399 aa8.1□□□□□ -1.11
VPS41-209ENST00000457055 NDFIP2Q9NV92 336 aa8.1□□□□□ -1.11
VPS41-209ENST00000457055 SERTAD1Q9UHV2 236 aa8.1□□□□□ -1.11
VPS41-209ENST00000457055 C2CD2LO14523 706 aa8.09□□□□□ -1.11
VPS41-209ENST00000457055 MSTNO14793 375 aa8.09□□□□□ -1.11
VPS41-209ENST00000457055 ATP4AP20648 1035 aa8.09□□□□□ -1.11
VPS41-209ENST00000457055 C1orf216Q8TAB5 229 aa8.09□□□□□ -1.11
VPS41-209ENST00000457055 AIDAQ96BJ3 306 aa8.09□□□□□ -1.11
VPS41-209ENST00000457055 MKL2Q9ULH7 1088 aa8.09□□□□□ -1.11
VPS41-209ENST00000457055 CTBSQ01459 385 aa8.08□□□□□ -1.12
VPS41-209ENST00000457055 SLCO4C1Q6ZQN7 724 aa8.08□□□□□ -1.12
VPS41-209ENST00000457055 SPOCK3Q9BQ16 436 aa8.08□□□□□ -1.12
VPS41-209ENST00000457055 TMEM229AB2RXF0 380 aa8.07□□□□□ -1.12
VPS41-209ENST00000457055 PIK3CDO00329 1044 aa8.07□□□□□ -1.12
VPS41-209ENST00000457055 ITGB2P05107 769 aa8.07□□□□□ -1.12
VPS41-209ENST00000457055 AMPD1P23109 780 aa8.07□□□□□ -1.12
VPS41-209ENST00000457055 PDE4CQ08493 712 aa8.07□□□□□ -1.12
VPS41-209ENST00000457055 NBPF1Q3BBV0 1214 aa8.07□□□□□ -1.12
VPS41-209ENST00000457055 NLRP8Q86W28 1048 aa8.07□□□□□ -1.12
VPS41-209ENST00000457055 ZCCHC2Q9C0B9 1178 aaKnown RBP8.07□□□□□ -1.12
VPS41-209ENST00000457055 DNAAF2Q9NVR5 837 aaKnown RBP8.07□□□□□ -1.12
VPS41-209ENST00000457055 GGA1Q9UJY5 639 aa8.07□□□□□ -1.12
VPS41-209ENST00000457055 CCDC9Q9Y3X0 531 aaKnown RBP8.07□□□□□ -1.12
VPS41-209ENST00000457055 PCDHGC4Q9Y5F7 938 aa8.07□□□□□ -1.12
VPS41-209ENST00000457055 NACADO15069 1562 aa8.06□□□□□ -1.12
VPS41-209ENST00000457055 EML3Q32P44 896 aa8.06□□□□□ -1.12
VPS41-209ENST00000457055 ARSJQ5FYB0 599 aaPredicted RBP8.06□□□□□ -1.12
VPS41-209ENST00000457055 COG6Q9Y2V7 657 aa8.06□□□□□ -1.12
VPS41-209ENST00000457055 DCDC2BA2VCK2 349 aa8.05□□□□□ -1.12
VPS41-209ENST00000457055 A6NJY4 79 aa8.05□□□□□ -1.12
VPS41-209ENST00000457055 ATXN7O15265 892 aaPredicted RBP8.05□□□□□ -1.12
VPS41-209ENST00000457055 TATP17735 454 aaPredicted RBP8.05□□□□□ -1.12
VPS41-209ENST00000457055 MTFR1Q15390 333 aa8.05□□□□□ -1.12
VPS41-209ENST00000457055 TAF7LQ5H9L4 462 aa8.05□□□□□ -1.12
VPS41-209ENST00000457055 SLC4A9Q96Q91 983 aa8.05□□□□□ -1.12
VPS41-209ENST00000457055 USP3Q9Y6I4 520 aa8.05□□□□□ -1.12
VPS41-209ENST00000457055 A0A1W2PNR3 127 aa8.04□□□□□ -1.12
VPS41-209ENST00000457055 CDK2AP1O14519 115 aa8.04□□□□□ -1.12
VPS41-209ENST00000457055 ARAFP10398 606 aa8.04□□□□□ -1.12
VPS41-209ENST00000457055 SKIP12755 728 aa8.04□□□□□ -1.12
VPS41-209ENST00000457055 ZNF295-AS1Q8N0V1 137 aa8.04□□□□□ -1.12
VPS41-209ENST00000457055 CABP1Q9NZU7 370 aa8.04□□□□□ -1.12
VPS41-209ENST00000457055 IQSEC3Q9UPP2 1182 aaPredicted RBP8.04□□□□□ -1.12
VPS41-209ENST00000457055 PCDHGA11Q9Y5H2 935 aa8.04□□□□□ -1.12
VPS41-209ENST00000457055 NEURL1BA8MQ27 555 aa8.03□□□□□ -1.12
VPS41-209ENST00000457055 PROCP04070 461 aa8.03□□□□□ -1.12
VPS41-209ENST00000457055 ALYREFQ86V81 257 aaKnown RBP8.03□□□□□ -1.12
VPS41-209ENST00000457055 WWC1Q8IX03 1113 aa8.03□□□□□ -1.12
VPS41-209ENST00000457055 ZDHHC3Q9NYG2 299 aa8.03□□□□□ -1.12
VPS41-209ENST00000457055 NOD1Q9Y239 953 aa8.03□□□□□ -1.12
VPS41-209ENST00000457055 KRBA1A5PL33 1030 aa8.02□□□□□ -1.13
VPS41-209ENST00000457055 BACH1O14867 736 aa8.02□□□□□ -1.13
VPS41-209ENST00000457055 KHNYNO15037 678 aaKnown RBP8.02□□□□□ -1.13
VPS41-209ENST00000457055 MAPTP10636 758 aaKnown RBP8.02□□□□□ -1.13
VPS41-209ENST00000457055 EPXP11678 715 aa8.02□□□□□ -1.13
VPS41-209ENST00000457055 CD33P20138 364 aa8.02□□□□□ -1.13
VPS41-209ENST00000457055 COL8A1P27658 744 aa8.02□□□□□ -1.13
VPS41-209ENST00000457055 GTF2IP78347 998 aa8.02□□□□□ -1.13
VPS41-209ENST00000457055 PSME1Q06323 249 aa8.02□□□□□ -1.13
VPS41-209ENST00000457055 GRIN2CQ14957 1233 aa8.02□□□□□ -1.13
VPS41-209ENST00000457055 GJA3Q9Y6H8 435 aa8.02□□□□□ -1.13
VPS41-209ENST00000457055 PIK3R2O00459 728 aa8.01□□□□□ -1.13
VPS41-209ENST00000457055 HOXB4P17483 251 aaPredicted RBP8.01□□□□□ -1.13
VPS41-209ENST00000457055 TNP2Q05952 138 aa8.01□□□□□ -1.13
VPS41-209ENST00000457055 NCOA4Q13772 614 aa8.01□□□□□ -1.13
VPS41-209ENST00000457055 BTBD6Q96KE9 485 aa8.01□□□□□ -1.13
VPS41-209ENST00000457055 ALG2Q9H553 416 aa8.01□□□□□ -1.13
VPS41-209ENST00000457055 PARP3Q9Y6F1 533 aa8.01□□□□□ -1.13
VPS41-209ENST00000457055 GNB5O14775 395 aa8□□□□□ -1.13
VPS41-209ENST00000457055 LZTS3O60299 673 aaPredicted RBP8□□□□□ -1.13
VPS41-209ENST00000457055 ADH6P28332 368 aa8□□□□□ -1.13
VPS41-209ENST00000457055 FAM182BQ5T319 152 aa8□□□□□ -1.13
VPS41-209ENST00000457055 LINC00114Q6XXX2 140 aa8□□□□□ -1.13
VPS41-209ENST00000457055 BICDL1Q6ZP65 573 aa8□□□□□ -1.13
VPS41-209ENST00000457055 NFATC2IPQ8NCF5 419 aa8□□□□□ -1.13
VPS41-209ENST00000457055 ZIC5Q96T25 663 aa8□□□□□ -1.13
VPS41-209ENST00000457055 SUV39H2Q9H5I1 410 aa8□□□□□ -1.13
VPS41-209ENST00000457055 HCN2Q9UL51 889 aa8□□□□□ -1.13
VPS41-209ENST00000457055 ADAM23O75077 832 aa7.99□□□□□ -1.13
VPS41-209ENST00000457055 FAM157BP0CG42 384 aa7.99□□□□□ -1.13
VPS41-209ENST00000457055 CHSY3Q70JA7 882 aa7.99□□□□□ -1.13
VPS41-209ENST00000457055 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.99□□□□□ -1.13
VPS41-209ENST00000457055 POM121Q96HA1 1249 aa7.99□□□□□ -1.13
VPS41-209ENST00000457055 ZNF358Q9NW07 568 aa7.99□□□□□ -1.13
VPS41-209ENST00000457055 USP17L5A8MUK1 530 aa7.98□□□□□ -1.13
VPS41-209ENST00000457055 TXLNAP40222 546 aa7.98□□□□□ -1.13
VPS41-209ENST00000457055 DGKGP49619 791 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms