RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PLEKHF1Q96S99 279 aa28.17■■■□□ 2.1
HMGB3-205ENST00000455596 TEX13AQ9BXU3 409 aaPredicted RBP28.17■■■□□ 2.1
HMGB3-205ENST00000455596 PARP3Q9Y6F1 533 aa28.17■■■□□ 2.1
HMGB3-205ENST00000455596 KIAA1551Q9HCM1 1747 aa28.17■■■□□ 2.1
HMGB3-205ENST00000455596 ZPR1O75312 459 aa28.15■■■□□ 2.1
HMGB3-205ENST00000455596 YBX3P16989 372 aaKnown RBP eCLIP28.15■■■□□ 2.1
HMGB3-205ENST00000455596 DCTN1Q14203 1278 aa28.15■■■□□ 2.1
HMGB3-205ENST00000455596 GRIN3BO60391 1043 aa28.14■■■□□ 2.1
HMGB3-205ENST00000455596 FKBP8Q14318 412 aa28.14■■■□□ 2.1
HMGB3-205ENST00000455596 C10orf71Q711Q0 1435 aa28.13■■■□□ 2.09
HMGB3-205ENST00000455596 KCNQ3O43525 872 aa28.13■■■□□ 2.09
HMGB3-205ENST00000455596 CANXP27824 592 aaKnown RBP28.13■■■□□ 2.09
HMGB3-205ENST00000455596 USPL1Q5W0Q7 1092 aa28.13■■■□□ 2.09
HMGB3-205ENST00000455596 MAPK8IP3Q9UPT6 1336 aa28.13■■■□□ 2.09
HMGB3-205ENST00000455596 NARFQ9UHQ1 456 aa28.12■■■□□ 2.09
HMGB3-205ENST00000455596 KDM3BQ7LBC6 1761 aa28.11■■■□□ 2.09
HMGB3-205ENST00000455596 AFDNP55196 1824 aaKnown RBP28.11■■■□□ 2.09
HMGB3-205ENST00000455596 NFE2L2Q16236 605 aa28.1■■■□□ 2.09
HMGB3-205ENST00000455596 BRCA1P38398 1863 aaKnown RBP28.1■■■□□ 2.09
HMGB3-205ENST00000455596 TGFB2P61812 414 aa28.09■■■□□ 2.09
HMGB3-205ENST00000455596 TAF7Q15545 349 aaPredicted RBP28.09■■■□□ 2.09
HMGB3-205ENST00000455596 SCN7AQ01118 1682 aa28.09■■■□□ 2.09
HMGB3-205ENST00000455596 PXDNLA1KZ92 1463 aa28.08■■■□□ 2.09
HMGB3-205ENST00000455596 EIF5P55010 431 aaKnown RBP28.08■■■□□ 2.09
HMGB3-205ENST00000455596 LAMB4A4D0S4 1761 aa28.08■■■□□ 2.09
HMGB3-205ENST00000455596 A0A087WZG4 1122 aa28.07■■■□□ 2.08
HMGB3-205ENST00000455596 NRXN2Q9P2S2 1712 aa28.06■■■□□ 2.08
HMGB3-205ENST00000455596 TM4SF1P30408 202 aa28.06■■■□□ 2.08
HMGB3-205ENST00000455596 DDR1Q08345 913 aa28.06■■■□□ 2.08
HMGB3-205ENST00000455596 WWC3Q9ULE0 1092 aa28.05■■■□□ 2.08
HMGB3-205ENST00000455596 BCORQ6W2J9 1755 aa28.04■■■□□ 2.08
HMGB3-205ENST00000455596 POLRMTO00411 1230 aaKnown RBP28.04■■■□□ 2.08
HMGB3-205ENST00000455596 A1BGP04217 495 aa28.04■■■□□ 2.08
HMGB3-205ENST00000455596 SNRPA1P09661 255 aaKnown RBP28.04■■■□□ 2.08
HMGB3-205ENST00000455596 IL6STP40189 918 aaPredicted RBP28.04■■■□□ 2.08
HMGB3-205ENST00000455596 ZNF330Q9Y3S2 320 aaPredicted RBP28.04■■■□□ 2.08
HMGB3-205ENST00000455596 USP16Q9Y5T5 823 aa28.04■■■□□ 2.08
HMGB3-205ENST00000455596 NPM2Q86SE8 214 aaKnown RBP28.03■■■□□ 2.08
HMGB3-205ENST00000455596 PNISRQ8TF01 805 aaKnown RBP28.03■■■□□ 2.08
HMGB3-205ENST00000455596 PRKRIP1Q9H875 184 aaPredicted RBP28.03■■■□□ 2.08
HMGB3-205ENST00000455596 BCL2L12Q9HB09 334 aa28.03■■■□□ 2.08
HMGB3-205ENST00000455596 ZNF784Q8NCA9 323 aaPredicted RBP28.02■■■□□ 2.08
HMGB3-205ENST00000455596 ARFGEF1Q9Y6D6 1849 aa28.02■■■□□ 2.08
HMGB3-205ENST00000455596 A0A0G2JLW4 131 aa28.01■■■□□ 2.07
HMGB3-205ENST00000455596 PRAMEF22A3QJZ6 481 aa28.01■■■□□ 2.07
HMGB3-205ENST00000455596 NFIXQ14938 502 aa28.01■■■□□ 2.07
HMGB3-205ENST00000455596 MIS18AQ9NYP9 233 aa28.01■■■□□ 2.07
HMGB3-205ENST00000455596 UTRNP46939 3433 aa28.01■■■□□ 2.07
HMGB3-205ENST00000455596 DPEP1P16444 411 aa27.99■■■□□ 2.07
HMGB3-205ENST00000455596 WDR43Q15061 677 aaKnown RBP eCLIP27.99■■■□□ 2.07
HMGB3-205ENST00000455596 THUMPD2Q9BTF0 503 aaKnown RBP27.99■■■□□ 2.07
HMGB3-205ENST00000455596 RIPK4P57078 832 aa27.98■■■□□ 2.07
HMGB3-205ENST00000455596 TBC1D2BQ9UPU7 963 aa27.98■■■□□ 2.07
HMGB3-205ENST00000455596 DLEC1Q9Y238 1755 aa27.96■■■□□ 2.07
HMGB3-205ENST00000455596 TMPOP42166 694 aaKnown RBP27.96■■■□□ 2.07
HMGB3-205ENST00000455596 SERPINB2P05120 415 aa27.95■■■□□ 2.06
HMGB3-205ENST00000455596 PIP4K2AP48426 406 aaPredicted RBP27.95■■■□□ 2.06
HMGB3-205ENST00000455596 LMOD3Q0VAK6 560 aa27.95■■■□□ 2.06
HMGB3-205ENST00000455596 BCS1LQ9Y276 419 aa27.95■■■□□ 2.06
HMGB3-205ENST00000455596 BICDL1Q6ZP65 573 aa27.94■■■□□ 2.06
HMGB3-205ENST00000455596 DZIP3Q86Y13 1208 aaKnown RBP27.94■■■□□ 2.06
HMGB3-205ENST00000455596 CCDC146Q8IYE0 955 aa27.94■■■□□ 2.06
HMGB3-205ENST00000455596 GOLGB1Q14789 3259 aaKnown RBP27.94■■■□□ 2.06
HMGB3-205ENST00000455596 TBC1D9BQ66K14 1250 aa27.93■■■□□ 2.06
HMGB3-205ENST00000455596 KCNA3P22001 575 aa27.92■■■□□ 2.06
HMGB3-205ENST00000455596 EIF4A1P60842 406 aaKnown RBP27.92■■■□□ 2.06
HMGB3-205ENST00000455596 RUNDC1Q96C34 613 aa27.92■■■□□ 2.06
HMGB3-205ENST00000455596 PIM2Q9P1W9 311 aa27.92■■■□□ 2.06
HMGB3-205ENST00000455596 ANKRD31Q8N7Z5 1873 aa27.91■■■□□ 2.06
HMGB3-205ENST00000455596 CAMTA2O94983 1202 aa27.91■■■□□ 2.06
HMGB3-205ENST00000455596 ADAMTS8Q9UP79 889 aa27.91■■■□□ 2.06
HMGB3-205ENST00000455596 GIGYF1O75420 1035 aaPredicted RBP27.9■■■□□ 2.06
HMGB3-205ENST00000455596 CARMIL3Q8ND23 1372 aa27.89■■■□□ 2.06
HMGB3-205ENST00000455596 NBPF26B4DH59 902 aa27.89■■■□□ 2.06
HMGB3-205ENST00000455596 CHRNA5P30532 468 aa27.89■■■□□ 2.06
HMGB3-205ENST00000455596 NBPF10Q6P3W6 841 aaKnown RBP27.89■■■□□ 2.06
HMGB3-205ENST00000455596 NBPF15Q8N660 670 aa27.89■■■□□ 2.06
HMGB3-205ENST00000455596 TSPYL4Q9UJ04 414 aa27.89■■■□□ 2.06
HMGB3-205ENST00000455596 RRP7AQ9Y3A4 280 aaKnown RBP27.89■■■□□ 2.06
HMGB3-205ENST00000455596 NEUROD2Q15784 382 aa27.88■■■□□ 2.05
HMGB3-205ENST00000455596 NUP98P52948 1817 aa27.86■■■□□ 2.05
HMGB3-205ENST00000455596 ZNF316A6NFI3 1004 aaPredicted RBP27.86■■■□□ 2.05
HMGB3-205ENST00000455596 DALRD3Q5D0E6 543 aaKnown RBP27.86■■■□□ 2.05
HMGB3-205ENST00000455596 SETDB2Q96T68 719 aa27.86■■■□□ 2.05
HMGB3-205ENST00000455596 BABAM1Q9NWV8 329 aa27.86■■■□□ 2.05
HMGB3-205ENST00000455596 CLEC4GQ6UXB4 293 aa27.85■■■□□ 2.05
HMGB3-205ENST00000455596 ZNF652Q9Y2D9 606 aa27.85■■■□□ 2.05
HMGB3-205ENST00000455596 ARHGAP27Q6ZUM4 889 aa27.84■■■□□ 2.05
HMGB3-205ENST00000455596 ADCY9O60503 1353 aa27.84■■■□□ 2.05
HMGB3-205ENST00000455596 ATP10DQ9P241 1426 aa27.83■■■□□ 2.05
HMGB3-205ENST00000455596 COL11A2P13942 1736 aaPredicted RBP27.82■■■□□ 2.04
HMGB3-205ENST00000455596 RGL2O15211 777 aa27.82■■■□□ 2.04
HMGB3-205ENST00000455596 CACNA1SQ13698 1873 aa27.81■■■□□ 2.04
HMGB3-205ENST00000455596 NPHP1O15259 732 aa27.81■■■□□ 2.04
HMGB3-205ENST00000455596 PRR5LQ6MZQ0 368 aa27.81■■■□□ 2.04
HMGB3-205ENST00000455596 TRIM35Q9UPQ4 493 aa27.81■■■□□ 2.04
HMGB3-205ENST00000455596 SBF1O95248 1867 aa27.81■■■□□ 2.04
HMGB3-205ENST00000455596 C2CD5Q86YS7 1000 aa27.8■■■□□ 2.04
HMGB3-205ENST00000455596 CNBD1Q8NA66 436 aa27.8■■■□□ 2.04
HMGB3-205ENST00000455596 H0YIN7 160 aa27.79■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms