RNA–Protein interactions for RNA: ENST00000455113.6

COPS7A-202, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 3

Gene COPS7A, Length 1,718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-202ENST00000455113 PNISRQ8TF01 805 aaKnown RBP23.34■■□□□ 1.33
COPS7A-202ENST00000455113 RIPK4P57078 832 aa23.33■■□□□ 1.33
COPS7A-202ENST00000455113 NPM2Q86SE8 214 aaKnown RBP23.33■■□□□ 1.33
COPS7A-202ENST00000455113 ZPR1O75312 459 aa23.32■■□□□ 1.32
COPS7A-202ENST00000455113 CCDC146Q8IYE0 955 aa23.32■■□□□ 1.32
COPS7A-202ENST00000455113 RUNDC1Q96C34 613 aa23.32■■□□□ 1.32
COPS7A-202ENST00000455113 ADAMTS8Q9UP79 889 aa23.31■■□□□ 1.32
COPS7A-202ENST00000455113 CANXP27824 592 aaKnown RBP23.3■■□□□ 1.32
COPS7A-202ENST00000455113 ZBTB1Q9Y2K1 713 aa23.3■■□□□ 1.32
COPS7A-202ENST00000455113 KCNQ3O43525 872 aa23.3■■□□□ 1.32
COPS7A-202ENST00000455113 TMPOP42166 694 aaKnown RBP23.3■■□□□ 1.32
COPS7A-202ENST00000455113 MMP10P09238 476 aa23.29■■□□□ 1.32
COPS7A-202ENST00000455113 SNRPA1P09661 255 aaKnown RBP23.29■■□□□ 1.32
COPS7A-202ENST00000455113 GYS1P13807 737 aa23.29■■□□□ 1.32
COPS7A-202ENST00000455113 C4AP0C0L4 1744 aa23.29■■□□□ 1.32
COPS7A-202ENST00000455113 SOS1Q07889 1333 aaPredicted RBP23.29■■□□□ 1.32
COPS7A-202ENST00000455113 NEUROD2Q15784 382 aa23.28■■□□□ 1.32
COPS7A-202ENST00000455113 CD2APQ9Y5K6 639 aa23.28■■□□□ 1.32
COPS7A-202ENST00000455113 USP42Q9H9J4 1324 aaKnown RBP23.28■■□□□ 1.32
COPS7A-202ENST00000455113 COL15A1P39059 1388 aa23.28■■□□□ 1.32
COPS7A-202ENST00000455113 A0A087WZG4 1122 aa23.27■■□□□ 1.32
COPS7A-202ENST00000455113 MIS18AQ9NYP9 233 aa23.27■■□□□ 1.32
COPS7A-202ENST00000455113 ZNF330Q9Y3S2 320 aaPredicted RBP23.27■■□□□ 1.32
COPS7A-202ENST00000455113 PARP3Q9Y6F1 533 aa23.27■■□□□ 1.32
COPS7A-202ENST00000455113 THUMPD2Q9BTF0 503 aaKnown RBP23.26■■□□□ 1.31
COPS7A-202ENST00000455113 SRP68Q9UHB9 627 aaKnown RBP23.26■■□□□ 1.31
COPS7A-202ENST00000455113 RRP7AQ9Y3A4 280 aaKnown RBP23.25■■□□□ 1.31
COPS7A-202ENST00000455113 GPR162Q16538 588 aa23.25■■□□□ 1.31
COPS7A-202ENST00000455113 USPL1Q5W0Q7 1092 aa23.24■■□□□ 1.31
COPS7A-202ENST00000455113 PELP1Q8IZL8 1130 aaKnown RBP23.24■■□□□ 1.31
COPS7A-202ENST00000455113 NARFQ9UHQ1 456 aa23.24■■□□□ 1.31
COPS7A-202ENST00000455113 USP16Q9Y5T5 823 aa23.24■■□□□ 1.31
COPS7A-202ENST00000455113 IL6STP40189 918 aaPredicted RBP23.23■■□□□ 1.31
COPS7A-202ENST00000455113 NLGN2Q8NFZ4 835 aa23.23■■□□□ 1.31
COPS7A-202ENST00000455113 EIF5P55010 431 aaKnown RBP23.22■■□□□ 1.31
COPS7A-202ENST00000455113 TSPYL4Q9UJ04 414 aa23.22■■□□□ 1.31
COPS7A-202ENST00000455113 A1BGP04217 495 aa23.22■■□□□ 1.31
COPS7A-202ENST00000455113 FKBP8Q14318 412 aa23.22■■□□□ 1.31
COPS7A-202ENST00000455113 FAM9BQ8IZU0 186 aa23.21■■□□□ 1.31
COPS7A-202ENST00000455113 BABAM1Q9NWV8 329 aa23.2■■□□□ 1.3
COPS7A-202ENST00000455113 KDM3BQ7LBC6 1761 aa23.2■■□□□ 1.3
COPS7A-202ENST00000455113 PRAMEF22A3QJZ6 481 aa23.19■■□□□ 1.3
COPS7A-202ENST00000455113 EIF4A1P60842 406 aaKnown RBP23.19■■□□□ 1.3
COPS7A-202ENST00000455113 GIGYF1O75420 1035 aaPredicted RBP23.16■■□□□ 1.3
COPS7A-202ENST00000455113 TBC1D2BQ9UPU7 963 aa23.16■■□□□ 1.3
COPS7A-202ENST00000455113 LAS1LQ9Y4W2 734 aaKnown RBP23.16■■□□□ 1.3
COPS7A-202ENST00000455113 APAF1O14727 1248 aa23.16■■□□□ 1.3
COPS7A-202ENST00000455113 TGFB2P61812 414 aa23.15■■□□□ 1.3
COPS7A-202ENST00000455113 DZIP3Q86Y13 1208 aaKnown RBP23.15■■□□□ 1.3
COPS7A-202ENST00000455113 TRIM35Q9UPQ4 493 aa23.15■■□□□ 1.3
COPS7A-202ENST00000455113 LAMB4A4D0S4 1761 aa23.14■■□□□ 1.3
COPS7A-202ENST00000455113 TM4SF1P30408 202 aa23.14■■□□□ 1.3
COPS7A-202ENST00000455113 PIP4K2AP48426 406 aaPredicted RBP23.14■■□□□ 1.3
COPS7A-202ENST00000455113 GRIN3BO60391 1043 aa23.13■■□□□ 1.29
COPS7A-202ENST00000455113 CALD1Q05682 793 aaKnown RBP23.13■■□□□ 1.29
COPS7A-202ENST00000455113 POLRMTO00411 1230 aaKnown RBP23.13■■□□□ 1.29
COPS7A-202ENST00000455113 NFIXQ14938 502 aa23.13■■□□□ 1.29
COPS7A-202ENST00000455113 YY1P25490 414 aa23.12■■□□□ 1.29
COPS7A-202ENST00000455113 DDR1Q08345 913 aa23.12■■□□□ 1.29
COPS7A-202ENST00000455113 BICDL1Q6ZP65 573 aa23.12■■□□□ 1.29
COPS7A-202ENST00000455113 C10orf71Q711Q0 1435 aa23.11■■□□□ 1.29
COPS7A-202ENST00000455113 BCL2L12Q9HB09 334 aa23.11■■□□□ 1.29
COPS7A-202ENST00000455113 ZNF652Q9Y2D9 606 aa23.11■■□□□ 1.29
COPS7A-202ENST00000455113 KIF13BQ9NQT8 1826 aa23.11■■□□□ 1.29
COPS7A-202ENST00000455113 CHL1O00533 1208 aa23.09■■□□□ 1.29
COPS7A-202ENST00000455113 NPHP1O15259 732 aa23.09■■□□□ 1.29
COPS7A-202ENST00000455113 SERPINB2P05120 415 aa23.09■■□□□ 1.29
COPS7A-202ENST00000455113 SCN7AQ01118 1682 aa23.09■■□□□ 1.29
COPS7A-202ENST00000455113 NBPF26B4DH59 902 aa23.08■■□□□ 1.29
COPS7A-202ENST00000455113 CAMTA2O94983 1202 aa23.08■■□□□ 1.29
COPS7A-202ENST00000455113 NBPF10Q6P3W6 841 aaKnown RBP23.08■■□□□ 1.29
COPS7A-202ENST00000455113 NBPF15Q8N660 670 aa23.08■■□□□ 1.29
COPS7A-202ENST00000455113 CFAP44Q96MT7 982 aa23.08■■□□□ 1.29
COPS7A-202ENST00000455113 SETDB2Q96T68 719 aa23.08■■□□□ 1.29
COPS7A-202ENST00000455113 CHD4Q14839 1912 aa23.08■■□□□ 1.28
COPS7A-202ENST00000455113 EIF2S2P20042 333 aaKnown RBP23.08■■□□□ 1.28
COPS7A-202ENST00000455113 TBC1D9BQ66K14 1250 aa23.08■■□□□ 1.28
COPS7A-202ENST00000455113 CLEC4GQ6UXB4 293 aa23.08■■□□□ 1.28
COPS7A-202ENST00000455113 WWC3Q9ULE0 1092 aa23.08■■□□□ 1.28
COPS7A-202ENST00000455113 ERBB4Q15303 1308 aa23.07■■□□□ 1.28
COPS7A-202ENST00000455113 A0A0G2JLW4 131 aa23.07■■□□□ 1.28
COPS7A-202ENST00000455113 YBX3P16989 372 aaKnown RBP eCLIP23.07■■□□□ 1.28
COPS7A-202ENST00000455113 NGEFQ8N5V2 710 aa23.07■■□□□ 1.28
COPS7A-202ENST00000455113 CARMIL3Q8ND23 1372 aa23.06■■□□□ 1.28
COPS7A-202ENST00000455113 MYL6BP14649 208 aa23.06■■□□□ 1.28
COPS7A-202ENST00000455113 PXDNLA1KZ92 1463 aa23.06■■□□□ 1.28
COPS7A-202ENST00000455113 GNAI1P63096 354 aa23.05■■□□□ 1.28
COPS7A-202ENST00000455113 YTHDC1Q96MU7 727 aaKnown RBP23.05■■□□□ 1.28
COPS7A-202ENST00000455113 N4BP2Q86UW6 1770 aaPredicted RBP23.05■■□□□ 1.28
COPS7A-202ENST00000455113 UTRNP46939 3433 aa23.05■■□□□ 1.28
COPS7A-202ENST00000455113 KIF6Q6ZMV9 814 aa23.05■■□□□ 1.28
COPS7A-202ENST00000455113 AFDNP55196 1824 aaKnown RBP23.05■■□□□ 1.28
COPS7A-202ENST00000455113 BCORQ6W2J9 1755 aa23.04■■□□□ 1.28
COPS7A-202ENST00000455113 RGL2O15211 777 aa23.04■■□□□ 1.28
COPS7A-202ENST00000455113 DPEP1P16444 411 aa23.04■■□□□ 1.28
COPS7A-202ENST00000455113 IFT57Q9NWB7 429 aa23.04■■□□□ 1.28
COPS7A-202ENST00000455113 PIM2Q9P1W9 311 aa23.02■■□□□ 1.28
COPS7A-202ENST00000455113 BCS1LQ9Y276 419 aa23.02■■□□□ 1.28
COPS7A-202ENST00000455113 GOLGB1Q14789 3259 aaKnown RBP23.02■■□□□ 1.28
COPS7A-202ENST00000455113 NRXN2Q9P2S2 1712 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms