RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 LMOD3Q0VAK6 560 aa26.24■■□□□ 1.79
COL9A3-202ENST00000452372 CICQ96RK0 1608 aaPredicted RBP26.24■■□□□ 1.79
COL9A3-202ENST00000452372 ADRA2BP18089 450 aa26.23■■□□□ 1.79
COL9A3-202ENST00000452372 NEUROD2Q15784 382 aa26.23■■□□□ 1.79
COL9A3-202ENST00000452372 ZNF496Q96IT1 587 aaPredicted RBP26.23■■□□□ 1.79
COL9A3-202ENST00000452372 TJP1Q07157 1748 aa26.22■■□□□ 1.79
COL9A3-202ENST00000452372 GYS1P13807 737 aa26.22■■□□□ 1.79
COL9A3-202ENST00000452372 NLGN1Q8N2Q7 840 aa26.22■■□□□ 1.79
COL9A3-202ENST00000452372 THUMPD2Q9BTF0 503 aaKnown RBP26.22■■□□□ 1.79
COL9A3-202ENST00000452372 KCNQ3O43525 872 aa26.21■■□□□ 1.79
COL9A3-202ENST00000452372 CRKLP46109 303 aaKnown RBP26.21■■□□□ 1.79
COL9A3-202ENST00000452372 DNAJC10Q8IXB1 793 aa26.21■■□□□ 1.79
COL9A3-202ENST00000452372 APAF1O14727 1248 aa26.2■■□□□ 1.78
COL9A3-202ENST00000452372 INTS5Q6P9B9 1019 aaKnown RBP26.2■■□□□ 1.78
COL9A3-202ENST00000452372 FMNL2Q96PY5 1086 aa26.2■■□□□ 1.78
COL9A3-202ENST00000452372 KIF13BQ9NQT8 1826 aa26.19■■□□□ 1.78
COL9A3-202ENST00000452372 WWC3Q9ULE0 1092 aa26.19■■□□□ 1.78
COL9A3-202ENST00000452372 TRIM35Q9UPQ4 493 aa26.19■■□□□ 1.78
COL9A3-202ENST00000452372 HEG1Q9ULI3 1381 aa26.19■■□□□ 1.78
COL9A3-202ENST00000452372 RFC4P35249 363 aa26.18■■□□□ 1.78
COL9A3-202ENST00000452372 MIS18AQ9NYP9 233 aa26.18■■□□□ 1.78
COL9A3-202ENST00000452372 CYP19A1P11511 503 aaPredicted RBP26.17■■□□□ 1.78
COL9A3-202ENST00000452372 TEX13AQ9BXU3 409 aaPredicted RBP26.17■■□□□ 1.78
COL9A3-202ENST00000452372 C4AP0C0L4 1744 aa26.17■■□□□ 1.78
COL9A3-202ENST00000452372 KIAA1551Q9HCM1 1747 aa26.17■■□□□ 1.78
COL9A3-202ENST00000452372 SRP68Q9UHB9 627 aaKnown RBP26.15■■□□□ 1.78
COL9A3-202ENST00000452372 C1QTNF8P60827 252 aa26.14■■□□□ 1.78
COL9A3-202ENST00000452372 BABAM1Q9NWV8 329 aa26.14■■□□□ 1.78
COL9A3-202ENST00000452372 KDM3BQ7LBC6 1761 aa26.13■■□□□ 1.77
COL9A3-202ENST00000452372 PXDNLA1KZ92 1463 aa26.13■■□□□ 1.77
COL9A3-202ENST00000452372 STARD3NLO95772 234 aa26.13■■□□□ 1.77
COL9A3-202ENST00000452372 DIEXFQ68CQ4 756 aaKnown RBP26.13■■□□□ 1.77
COL9A3-202ENST00000452372 CCDC87Q9NVE4 849 aa26.13■■□□□ 1.77
COL9A3-202ENST00000452372 N4BP2Q86UW6 1770 aaPredicted RBP26.12■■□□□ 1.77
COL9A3-202ENST00000452372 A0A0G2JLW4 131 aa26.12■■□□□ 1.77
COL9A3-202ENST00000452372 TGFB2P61812 414 aa26.12■■□□□ 1.77
COL9A3-202ENST00000452372 USP42Q9H9J4 1324 aaKnown RBP26.12■■□□□ 1.77
COL9A3-202ENST00000452372 SNRPA1P09661 255 aaKnown RBP26.11■■□□□ 1.77
COL9A3-202ENST00000452372 FKBP8Q14318 412 aa26.11■■□□□ 1.77
COL9A3-202ENST00000452372 FAM9BQ8IZU0 186 aa26.11■■□□□ 1.77
COL9A3-202ENST00000452372 C10orf71Q711Q0 1435 aa26.11■■□□□ 1.77
COL9A3-202ENST00000452372 CCER2I3L3R5 266 aa26.1■■□□□ 1.77
COL9A3-202ENST00000452372 TSPYL4Q9UJ04 414 aa26.1■■□□□ 1.77
COL9A3-202ENST00000452372 ADCY9O60503 1353 aa26.09■■□□□ 1.77
COL9A3-202ENST00000452372 EIF4A1P60842 406 aaKnown RBP26.09■■□□□ 1.77
COL9A3-202ENST00000452372 KCNA3P22001 575 aa26.08■■□□□ 1.77
COL9A3-202ENST00000452372 DDR1Q08345 913 aa26.08■■□□□ 1.77
COL9A3-202ENST00000452372 ZBTB1Q9Y2K1 713 aa26.08■■□□□ 1.77
COL9A3-202ENST00000452372 USP16Q9Y5T5 823 aa26.08■■□□□ 1.77
COL9A3-202ENST00000452372 PARP3Q9Y6F1 533 aa26.08■■□□□ 1.77
COL9A3-202ENST00000452372 SOS1Q07889 1333 aaPredicted RBP26.08■■□□□ 1.77
COL9A3-202ENST00000452372 ATP10DQ9P241 1426 aa26.07■■□□□ 1.76
COL9A3-202ENST00000452372 CHL1O00533 1208 aa26.07■■□□□ 1.76
COL9A3-202ENST00000452372 DPEP1P16444 411 aa26.07■■□□□ 1.76
COL9A3-202ENST00000452372 TM4SF1P30408 202 aa26.07■■□□□ 1.76
COL9A3-202ENST00000452372 NCBP3Q53F19 620 aaKnown RBP26.07■■□□□ 1.76
COL9A3-202ENST00000452372 PRAMEF22A3QJZ6 481 aa26.06■■□□□ 1.76
COL9A3-202ENST00000452372 GIGYF1O75420 1035 aaPredicted RBP26.05■■□□□ 1.76
COL9A3-202ENST00000452372 CCDC27Q2M243 656 aa26.05■■□□□ 1.76
COL9A3-202ENST00000452372 BRCA1P38398 1863 aaKnown RBP26.04■■□□□ 1.76
COL9A3-202ENST00000452372 CANXP27824 592 aaKnown RBP26.04■■□□□ 1.76
COL9A3-202ENST00000452372 CALD1Q05682 793 aaKnown RBP26.04■■□□□ 1.76
COL9A3-202ENST00000452372 CFAP44Q96MT7 982 aa26.04■■□□□ 1.76
COL9A3-202ENST00000452372 A1BGP04217 495 aa26.03■■□□□ 1.76
COL9A3-202ENST00000452372 USPL1Q5W0Q7 1092 aa26.03■■□□□ 1.76
COL9A3-202ENST00000452372 LAS1LQ9Y4W2 734 aaKnown RBP26.03■■□□□ 1.76
COL9A3-202ENST00000452372 POLRMTO00411 1230 aaKnown RBP26.02■■□□□ 1.76
COL9A3-202ENST00000452372 EIF5P55010 431 aaKnown RBP26.02■■□□□ 1.76
COL9A3-202ENST00000452372 SENP3-EIF4A1A0A087X0R7 540 aa26.01■■□□□ 1.75
COL9A3-202ENST00000452372 ZNF853P0CG23 659 aa26.01■■□□□ 1.75
COL9A3-202ENST00000452372 IL6STP40189 918 aaPredicted RBP26.01■■□□□ 1.75
COL9A3-202ENST00000452372 BCL2L12Q9HB09 334 aa26.01■■□□□ 1.75
COL9A3-202ENST00000452372 NARFQ9UHQ1 456 aa26.01■■□□□ 1.75
COL9A3-202ENST00000452372 BCS1LQ9Y276 419 aa26.01■■□□□ 1.75
COL9A3-202ENST00000452372 COL15A1P39059 1388 aa26■■□□□ 1.75
COL9A3-202ENST00000452372 ZPR1O75312 459 aa26■■□□□ 1.75
COL9A3-202ENST00000452372 WWC1Q8IX03 1113 aa26■■□□□ 1.75
COL9A3-202ENST00000452372 IFT57Q9NWB7 429 aa26■■□□□ 1.75
COL9A3-202ENST00000452372 GNAI1P63096 354 aa25.99■■□□□ 1.75
COL9A3-202ENST00000452372 A0A087WZG4 1122 aa25.98■■□□□ 1.75
COL9A3-202ENST00000452372 MIER1Q8N108 512 aa25.98■■□□□ 1.75
COL9A3-202ENST00000452372 LAMB4A4D0S4 1761 aa25.97■■□□□ 1.75
COL9A3-202ENST00000452372 NFIXQ14938 502 aa25.97■■□□□ 1.75
COL9A3-202ENST00000452372 NGEFQ8N5V2 710 aa25.97■■□□□ 1.75
COL9A3-202ENST00000452372 GPBP1L1Q9HC44 474 aaPredicted RBP25.96■■□□□ 1.75
COL9A3-202ENST00000452372 MBIPQ9NS73 344 aa25.96■■□□□ 1.75
COL9A3-202ENST00000452372 AFDNP55196 1824 aaKnown RBP25.95■■□□□ 1.75
COL9A3-202ENST00000452372 NBPF26B4DH59 902 aa25.95■■□□□ 1.74
COL9A3-202ENST00000452372 NBPF10Q6P3W6 841 aaKnown RBP25.95■■□□□ 1.74
COL9A3-202ENST00000452372 NBPF15Q8N660 670 aa25.95■■□□□ 1.74
COL9A3-202ENST00000452372 ZNF526Q8TF50 670 aaPredicted RBP25.95■■□□□ 1.74
COL9A3-202ENST00000452372 ARFGEF1Q9Y6D6 1849 aa25.94■■□□□ 1.74
COL9A3-202ENST00000452372 CHRNA5P30532 468 aa25.94■■□□□ 1.74
COL9A3-202ENST00000452372 PIP4K2AP48426 406 aaPredicted RBP25.94■■□□□ 1.74
COL9A3-202ENST00000452372 ARHGAP27Q6ZUM4 889 aa25.94■■□□□ 1.74
COL9A3-202ENST00000452372 NPM2Q86SE8 214 aaKnown RBP25.94■■□□□ 1.74
COL9A3-202ENST00000452372 PIM2Q9P1W9 311 aa25.94■■□□□ 1.74
COL9A3-202ENST00000452372 SALL2Q9Y467 1007 aaPredicted RBP25.94■■□□□ 1.74
COL9A3-202ENST00000452372 CEP350Q5VT06 3117 aa25.93■■□□□ 1.74
COL9A3-202ENST00000452372 ZNF330Q9Y3S2 320 aaPredicted RBP25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms