RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 A0A087WZG4 1122 aa9.47□□□□□ -0.89
VPS41-208ENST00000448833 SENP3-EIF4A1A0A087X0R7 540 aa9.47□□□□□ -0.89
VPS41-208ENST00000448833 CYP19A1P11511 503 aaPredicted RBP9.47□□□□□ -0.89
VPS41-208ENST00000448833 INTS5Q6P9B9 1019 aaKnown RBP9.47□□□□□ -0.89
VPS41-208ENST00000448833 UBR2Q8IWV8 1755 aa9.47□□□□□ -0.89
VPS41-208ENST00000448833 C10orf71Q711Q0 1435 aa9.47□□□□□ -0.89
VPS41-208ENST00000448833 ATP10DQ9P241 1426 aa9.47□□□□□ -0.89
VPS41-208ENST00000448833 A0A0G2JLW4 131 aa9.46□□□□□ -0.9
VPS41-208ENST00000448833 NEFMP07197 916 aa9.46□□□□□ -0.9
VPS41-208ENST00000448833 ARHGAP27Q6ZUM4 889 aa9.46□□□□□ -0.9
VPS41-208ENST00000448833 DNAJC10Q8IXB1 793 aa9.46□□□□□ -0.9
VPS41-208ENST00000448833 NARFQ9UHQ1 456 aa9.46□□□□□ -0.9
VPS41-208ENST00000448833 BCS1LQ9Y276 419 aa9.46□□□□□ -0.9
VPS41-208ENST00000448833 PXDNLA1KZ92 1463 aa9.46□□□□□ -0.9
VPS41-208ENST00000448833 KIAA1551Q9HCM1 1747 aa9.45□□□□□ -0.9
VPS41-208ENST00000448833 SIPA1L3O60292 1781 aaPredicted RBP9.45□□□□□ -0.9
VPS41-208ENST00000448833 FCHSD2O94868 740 aa9.45□□□□□ -0.9
VPS41-208ENST00000448833 DPEP1P16444 411 aa9.45□□□□□ -0.9
VPS41-208ENST00000448833 TM4SF1P30408 202 aa9.45□□□□□ -0.9
VPS41-208ENST00000448833 SLC39A6Q13433 755 aa9.45□□□□□ -0.9
VPS41-208ENST00000448833 FKBP8Q14318 412 aa9.45□□□□□ -0.9
VPS41-208ENST00000448833 DALRD3Q5D0E6 543 aaKnown RBP9.45□□□□□ -0.9
VPS41-208ENST00000448833 RTF1Q92541 710 aaKnown RBP9.45□□□□□ -0.9
VPS41-208ENST00000448833 PDZRN3Q9UPQ7 1066 aa9.45□□□□□ -0.9
VPS41-208ENST00000448833 SOS1Q07889 1333 aaPredicted RBP9.45□□□□□ -0.9
VPS41-208ENST00000448833 ADCY9O60503 1353 aa9.45□□□□□ -0.9
VPS41-208ENST00000448833 AFDNP55196 1824 aaKnown RBP9.45□□□□□ -0.9
VPS41-208ENST00000448833 CNGB1Q14028 1251 aaPredicted RBP9.44□□□□□ -0.9
VPS41-208ENST00000448833 USPL1Q5W0Q7 1092 aa9.44□□□□□ -0.9
VPS41-208ENST00000448833 ZNF790Q6PG37 636 aa9.44□□□□□ -0.9
VPS41-208ENST00000448833 FMNL2Q96PY5 1086 aa9.44□□□□□ -0.9
VPS41-208ENST00000448833 PNNQ9H307 717 aaKnown RBP9.44□□□□□ -0.9
VPS41-208ENST00000448833 SRP68Q9UHB9 627 aaKnown RBP9.44□□□□□ -0.9
VPS41-208ENST00000448833 COL15A1P39059 1388 aa9.44□□□□□ -0.9
VPS41-208ENST00000448833 KCPQ6ZWJ8 1503 aa9.43□□□□□ -0.9
VPS41-208ENST00000448833 COL3A1P02461 1466 aaPredicted RBP9.43□□□□□ -0.9
VPS41-208ENST00000448833 POLRMTO00411 1230 aaKnown RBP9.43□□□□□ -0.9
VPS41-208ENST00000448833 HTATSF1O43719 755 aaKnown RBP9.43□□□□□ -0.9
VPS41-208ENST00000448833 U2AF1L5P0DN76 240 aaPredicted RBP9.43□□□□□ -0.9
VPS41-208ENST00000448833 U2AF1Q01081 240 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS41-208ENST00000448833 IL17REQ8NFR9 667 aa9.43□□□□□ -0.9
VPS41-208ENST00000448833 SBF1O95248 1867 aa9.42□□□□□ -0.9
VPS41-208ENST00000448833 HEG1Q9ULI3 1381 aa9.42□□□□□ -0.9
VPS41-208ENST00000448833 BTBD11A6QL63 1104 aa9.42□□□□□ -0.9
VPS41-208ENST00000448833 KCNA3P22001 575 aa9.42□□□□□ -0.9
VPS41-208ENST00000448833 CANXP27824 592 aaKnown RBP9.42□□□□□ -0.9
VPS41-208ENST00000448833 PRKAR2BP31323 418 aa9.42□□□□□ -0.9
VPS41-208ENST00000448833 IL6STP40189 918 aaPredicted RBP9.42□□□□□ -0.9
VPS41-208ENST00000448833 EIF5P55010 431 aaKnown RBP9.42□□□□□ -0.9
VPS41-208ENST00000448833 ZNF526Q8TF50 670 aaPredicted RBP9.42□□□□□ -0.9
VPS41-208ENST00000448833 WWC3Q9ULE0 1092 aa9.42□□□□□ -0.9
VPS41-208ENST00000448833 ZBTB1Q9Y2K1 713 aa9.42□□□□□ -0.9
VPS41-208ENST00000448833 NRXN2Q9P2S2 1712 aa9.42□□□□□ -0.9
VPS41-208ENST00000448833 CEMIPQ8WUJ3 1361 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 KDM2BQ8NHM5 1336 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 H0YIN7 160 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 SERPINB2P05120 415 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 PPP2R1AP30153 589 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 DDR1Q08345 913 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 NFIXQ14938 502 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 ZNF496Q96IT1 587 aaPredicted RBP9.41□□□□□ -0.9
VPS41-208ENST00000448833 RSPH6AQ9H0K4 717 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 DLEC1Q9Y238 1755 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 CEP350Q5VT06 3117 aa9.41□□□□□ -0.9
VPS41-208ENST00000448833 CCDC88AQ3V6T2 1871 aa9.4□□□□□ -0.9
VPS41-208ENST00000448833 ZC3H4Q9UPT8 1303 aaKnown RBP9.4□□□□□ -0.9
VPS41-208ENST00000448833 TOMM70O94826 608 aa9.4□□□□□ -0.9
VPS41-208ENST00000448833 DSG3P32926 999 aa9.4□□□□□ -0.9
VPS41-208ENST00000448833 PDE6BP35913 854 aa9.4□□□□□ -0.9
VPS41-208ENST00000448833 C16orf71Q8IYS4 520 aaPredicted RBP9.4□□□□□ -0.9
VPS41-208ENST00000448833 RGL2O15211 777 aa9.39□□□□□ -0.91
VPS41-208ENST00000448833 NPHP1O15259 732 aa9.39□□□□□ -0.91
VPS41-208ENST00000448833 SNRPA1P09661 255 aaKnown RBP9.39□□□□□ -0.91
VPS41-208ENST00000448833 HSPA6P17066 643 aa9.39□□□□□ -0.91
VPS41-208ENST00000448833 CLEC4GQ6UXB4 293 aa9.39□□□□□ -0.91
VPS41-208ENST00000448833 TTLL6Q8N841 843 aa9.39□□□□□ -0.91
VPS41-208ENST00000448833 PNISRQ8TF01 805 aaKnown RBP9.39□□□□□ -0.91
VPS41-208ENST00000448833 PHACTR3Q96KR7 559 aa9.39□□□□□ -0.91
VPS41-208ENST00000448833 SETDB2Q96T68 719 aa9.39□□□□□ -0.91
VPS41-208ENST00000448833 BRIP1Q9BX63 1249 aa9.39□□□□□ -0.91
VPS41-208ENST00000448833 ZNF652Q9Y2D9 606 aa9.39□□□□□ -0.91
VPS41-208ENST00000448833 CARMIL3Q8ND23 1372 aa9.38□□□□□ -0.91
VPS41-208ENST00000448833 TAF7Q15545 349 aaPredicted RBP9.38□□□□□ -0.91
VPS41-208ENST00000448833 C9orf131Q5VYM1 1079 aa9.38□□□□□ -0.91
VPS41-208ENST00000448833 C2CD5Q86YS7 1000 aa9.38□□□□□ -0.91
VPS41-208ENST00000448833 ZNF330Q9Y3S2 320 aaPredicted RBP9.38□□□□□ -0.91
VPS41-208ENST00000448833 DLG5Q8TDM6 1919 aa9.38□□□□□ -0.91
VPS41-208ENST00000448833 SCN7AQ01118 1682 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 KIF3CO14782 793 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 CAPN15O75808 1086 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 LMNB1P20700 586 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 CHRNA5P30532 468 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 APLP1P51693 650 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 ST5P78524 1137 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 BCL2L12Q9HB09 334 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 RNF181Q9P0P0 153 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 TBC1D2BQ9UPU7 963 aa9.37□□□□□ -0.91
VPS41-208ENST00000448833 DICER1Q9UPY3 1922 aaKnown RBP9.37□□□□□ -0.91
VPS41-208ENST00000448833 TNRC6CQ9HCJ0 1690 aaKnown RBP9.36□□□□□ -0.91
VPS41-208ENST00000448833 A1BGP04217 495 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms