RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 ADD1P35611 737 aaKnown RBP9.45□□□□□ -0.9
USP49-205ENST00000448078 GLMNQ92990 594 aa9.45□□□□□ -0.9
USP49-205ENST00000448078 INSM2Q96T92 566 aaPredicted RBP9.45□□□□□ -0.9
USP49-205ENST00000448078 CDCA7Q9BWT1 371 aaPredicted RBP9.45□□□□□ -0.9
USP49-205ENST00000448078 NCOA1Q15788 1441 aa9.45□□□□□ -0.9
USP49-205ENST00000448078 STRCQ7RTU9 1775 aa9.45□□□□□ -0.9
USP49-205ENST00000448078 SOBPA7XYQ1 873 aa9.44□□□□□ -0.9
USP49-205ENST00000448078 PTGIRP43119 386 aa9.44□□□□□ -0.9
USP49-205ENST00000448078 SCTRP47872 440 aa9.44□□□□□ -0.9
USP49-205ENST00000448078 ERVK-9P63128 1117 aa9.44□□□□□ -0.9
USP49-205ENST00000448078 PSME1Q06323 249 aa9.44□□□□□ -0.9
USP49-205ENST00000448078 MAP7D1Q3KQU3 841 aa9.44□□□□□ -0.9
USP49-205ENST00000448078 ZNF777Q9ULD5 760 aaPredicted RBP9.44□□□□□ -0.9
USP49-205ENST00000448078 ZMYM3Q14202 1370 aa9.44□□□□□ -0.9
USP49-205ENST00000448078 CLIP1P30622 1438 aa9.44□□□□□ -0.9
USP49-205ENST00000448078 LTBP4Q8N2S1 1624 aa9.44□□□□□ -0.9
USP49-205ENST00000448078 NPATQ14207 1427 aa9.43□□□□□ -0.9
USP49-205ENST00000448078 PIK3CDO00329 1044 aa9.43□□□□□ -0.9
USP49-205ENST00000448078 GTF2E1P29083 439 aaPredicted RBP9.43□□□□□ -0.9
USP49-205ENST00000448078 EML3Q32P44 896 aa9.43□□□□□ -0.9
USP49-205ENST00000448078 SLC27A3Q5K4L6 730 aa9.43□□□□□ -0.9
USP49-205ENST00000448078 ALG2Q9H553 416 aa9.43□□□□□ -0.9
USP49-205ENST00000448078 TSGA10IPQ3SY00 556 aa9.42□□□□□ -0.9
USP49-205ENST00000448078 ANKLE2Q86XL3 938 aa9.42□□□□□ -0.9
USP49-205ENST00000448078 ARHGEF10LQ9HCE6 1279 aa9.42□□□□□ -0.9
USP49-205ENST00000448078 RAB6BQ9NRW1 208 aa9.42□□□□□ -0.9
USP49-205ENST00000448078 SAMD9Q5K651 1589 aa9.41□□□□□ -0.9
USP49-205ENST00000448078 SPINT1O43278 529 aa9.41□□□□□ -0.9
USP49-205ENST00000448078 TRAK2O60296 914 aa9.41□□□□□ -0.9
USP49-205ENST00000448078 GGT6Q6P531 493 aa9.41□□□□□ -0.9
USP49-205ENST00000448078 DEPDC4Q8N2C3 294 aa9.41□□□□□ -0.9
USP49-205ENST00000448078 ZMYND15Q9H091 742 aa9.41□□□□□ -0.9
USP49-205ENST00000448078 ARHGAP5Q13017 1502 aa9.41□□□□□ -0.9
USP49-205ENST00000448078 PTPRKQ15262 1439 aa9.4□□□□□ -0.9
USP49-205ENST00000448078 SPAG9O60271 1321 aaKnown RBP9.4□□□□□ -0.9
USP49-205ENST00000448078 A0A1W2PRU2 124 aa9.4□□□□□ -0.9
USP49-205ENST00000448078 CTSOP43234 321 aaPredicted RBP9.4□□□□□ -0.9
USP49-205ENST00000448078 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.4□□□□□ -0.9
USP49-205ENST00000448078 THEMISQ8N1K5 641 aaPredicted RBP9.4□□□□□ -0.9
USP49-205ENST00000448078 NOD1Q9Y239 953 aa9.4□□□□□ -0.9
USP49-205ENST00000448078 MLH3Q9UHC1 1453 aa9.4□□□□□ -0.91
USP49-205ENST00000448078 FMN1Q68DA7 1419 aa9.39□□□□□ -0.91
USP49-205ENST00000448078 CAMSAP1Q5T5Y3 1602 aa9.39□□□□□ -0.91
USP49-205ENST00000448078 USP17L5A8MUK1 530 aa9.39□□□□□ -0.91
USP49-205ENST00000448078 ESCO1Q5FWF5 840 aa9.39□□□□□ -0.91
USP49-205ENST00000448078 PHTF2Q8N3S3 785 aa9.39□□□□□ -0.91
USP49-205ENST00000448078 OSBPL3Q9H4L5 887 aa9.39□□□□□ -0.91
USP49-205ENST00000448078 RBM19Q9Y4C8 960 aaKnown RBP9.39□□□□□ -0.91
USP49-205ENST00000448078 AGLP35573 1532 aa9.39□□□□□ -0.91
USP49-205ENST00000448078 EEA1Q15075 1411 aa9.39□□□□□ -0.91
USP49-205ENST00000448078 SOS2Q07890 1332 aaPredicted RBP9.38□□□□□ -0.91
USP49-205ENST00000448078 NCOA4Q13772 614 aa9.38□□□□□ -0.91
USP49-205ENST00000448078 FNBP4Q8N3X1 1017 aaPredicted RBP9.38□□□□□ -0.91
USP49-205ENST00000448078 GNRH1P01148 92 aa9.37□□□□□ -0.91
USP49-205ENST00000448078 PRICKLE2Q7Z3G6 844 aa9.37□□□□□ -0.91
USP49-205ENST00000448078 NFATC2IPQ8NCF5 419 aa9.37□□□□□ -0.91
USP49-205ENST00000448078 ADAMTS19Q8TE59 1207 aa9.37□□□□□ -0.91
USP49-205ENST00000448078 DNMT3LQ9UJW3 386 aa9.37□□□□□ -0.91
USP49-205ENST00000448078 PLA2R1Q13018 1463 aa9.36□□□□□ -0.91
USP49-205ENST00000448078 TBC1D9Q6ZT07 1266 aa9.36□□□□□ -0.91
USP49-205ENST00000448078 SLC16A10Q8TF71 515 aa9.36□□□□□ -0.91
USP49-205ENST00000448078 TROQ12816 1431 aaPredicted RBP9.36□□□□□ -0.91
USP49-205ENST00000448078 ATP9BO43861 1147 aa9.35□□□□□ -0.91
USP49-205ENST00000448078 LZTS3O60299 673 aaPredicted RBP9.35□□□□□ -0.91
USP49-205ENST00000448078 VEGFBP49765 207 aa9.35□□□□□ -0.91
USP49-205ENST00000448078 LYSMD3Q7Z3D4 306 aa9.35□□□□□ -0.91
USP49-205ENST00000448078 TRIM50Q86XT4 487 aa9.35□□□□□ -0.91
USP49-205ENST00000448078 CNKSR1Q969H4 720 aa9.35□□□□□ -0.91
USP49-205ENST00000448078 ZNF775Q96BV0 537 aaPredicted RBP9.35□□□□□ -0.91
USP49-205ENST00000448078 REREQ9P2R6 1566 aa9.35□□□□□ -0.91
USP49-205ENST00000448078 USP17L3A6NCW0 530 aa9.34□□□□□ -0.91
USP49-205ENST00000448078 USP17L4A6NCW7 530 aa9.34□□□□□ -0.91
USP49-205ENST00000448078 GTF2IP78347 998 aa9.34□□□□□ -0.91
USP49-205ENST00000448078 CLN3Q13286 438 aa9.34□□□□□ -0.91
USP49-205ENST00000448078 TMEM214Q6NUQ4 689 aaKnown RBP9.34□□□□□ -0.91
USP49-205ENST00000448078 USP17L2Q6R6M4 530 aa9.34□□□□□ -0.91
USP49-205ENST00000448078 USP17L1Q7RTZ2 530 aa9.34□□□□□ -0.91
USP49-205ENST00000448078 TFIP11Q9UBB9 837 aaKnown RBP9.34□□□□□ -0.91
USP49-205ENST00000448078 CPS1P31327 1500 aa9.34□□□□□ -0.91
USP49-205ENST00000448078 SIGLEC1Q9BZZ2 1709 aa9.34□□□□□ -0.92
USP49-205ENST00000448078 C3P01024 1663 aa9.33□□□□□ -0.92
USP49-205ENST00000448078 CDK13Q14004 1512 aaKnown RBP9.33□□□□□ -0.92
USP49-205ENST00000448078 RHOQP17081 205 aa9.33□□□□□ -0.92
USP49-205ENST00000448078 HNRNPMP52272 730 aaKnown RBP eCLIP9.33□□□□□ -0.92
USP49-205ENST00000448078 RNF217Q8TC41 542 aa9.33□□□□□ -0.92
USP49-205ENST00000448078 NXF1Q9UBU9 619 aaKnown RBP9.33□□□□□ -0.92
USP49-205ENST00000448078 CFDP1Q9UEE9 299 aaPredicted RBP9.33□□□□□ -0.92
USP49-205ENST00000448078 SERTAD1Q9UHV2 236 aa9.33□□□□□ -0.92
USP49-205ENST00000448078 MED1Q15648 1581 aaPredicted RBP9.33□□□□□ -0.92
USP49-205ENST00000448078 MYO5CQ9NQX4 1742 aa9.32□□□□□ -0.92
USP49-205ENST00000448078 STAU1O95793 577 aaKnown RBP9.32□□□□□ -0.92
USP49-205ENST00000448078 LMOD1P29536 600 aaPredicted RBP9.32□□□□□ -0.92
USP49-205ENST00000448078 ATP1A2P50993 1020 aa9.32□□□□□ -0.92
USP49-205ENST00000448078 GDF10P55107 478 aa9.32□□□□□ -0.92
USP49-205ENST00000448078 TLR1Q15399 786 aa9.32□□□□□ -0.92
USP49-205ENST00000448078 GNASQ5JWF2 1037 aa9.32□□□□□ -0.92
USP49-205ENST00000448078 CCDC97Q96F63 343 aaPredicted RBP9.32□□□□□ -0.92
USP49-205ENST00000448078 UCN2Q96RP3 112 aa9.32□□□□□ -0.92
USP49-205ENST00000448078 SHANK2Q9UPX8 1470 aa9.32□□□□□ -0.92
USP49-205ENST00000448078 KDM5CP41229 1560 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms