RNA–Protein interactions for RNA: ENST00000444532.2

CCDC188-202, Transcript of coiled-coil domain containing 188, humanhuman

TSL 3

Gene CCDC188, Length 628 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188-202ENST00000444532 RUNDC1Q96C34 613 aa24.57■■□□□ 1.52
CCDC188-202ENST00000444532 CD2APQ9Y5K6 639 aa24.57■■□□□ 1.52
CCDC188-202ENST00000444532 TMPOP42166 694 aaKnown RBP24.56■■□□□ 1.52
CCDC188-202ENST00000444532 ZBTB1Q9Y2K1 713 aa24.56■■□□□ 1.52
CCDC188-202ENST00000444532 USP42Q9H9J4 1324 aaKnown RBP24.55■■□□□ 1.52
CCDC188-202ENST00000444532 MMP10P09238 476 aa24.54■■□□□ 1.52
CCDC188-202ENST00000444532 LMOD3Q0VAK6 560 aa24.54■■□□□ 1.52
CCDC188-202ENST00000444532 CCDC146Q8IYE0 955 aa24.54■■□□□ 1.52
CCDC188-202ENST00000444532 ZPR1O75312 459 aa24.53■■□□□ 1.52
CCDC188-202ENST00000444532 SNRPA1P09661 255 aaKnown RBP24.53■■□□□ 1.52
CCDC188-202ENST00000444532 CANXP27824 592 aaKnown RBP24.53■■□□□ 1.52
CCDC188-202ENST00000444532 SRP68Q9UHB9 627 aaKnown RBP24.53■■□□□ 1.52
CCDC188-202ENST00000444532 COL15A1P39059 1388 aa24.53■■□□□ 1.52
CCDC188-202ENST00000444532 NLGN2Q8NFZ4 835 aa24.52■■□□□ 1.52
CCDC188-202ENST00000444532 THUMPD2Q9BTF0 503 aaKnown RBP24.52■■□□□ 1.52
CCDC188-202ENST00000444532 MIS18AQ9NYP9 233 aa24.52■■□□□ 1.52
CCDC188-202ENST00000444532 ANP32CO43423 234 aa24.51■■□□□ 1.51
CCDC188-202ENST00000444532 EIF5P55010 431 aaKnown RBP24.51■■□□□ 1.51
CCDC188-202ENST00000444532 NARFQ9UHQ1 456 aa24.51■■□□□ 1.51
CCDC188-202ENST00000444532 KDM3BQ7LBC6 1761 aa24.51■■□□□ 1.51
CCDC188-202ENST00000444532 A0A087WZG4 1122 aa24.5■■□□□ 1.51
CCDC188-202ENST00000444532 USP16Q9Y5T5 823 aa24.5■■□□□ 1.51
CCDC188-202ENST00000444532 IL6STP40189 918 aaPredicted RBP24.49■■□□□ 1.51
CCDC188-202ENST00000444532 PARP3Q9Y6F1 533 aa24.49■■□□□ 1.51
CCDC188-202ENST00000444532 A1BGP04217 495 aa24.48■■□□□ 1.51
CCDC188-202ENST00000444532 FKBP8Q14318 412 aa24.48■■□□□ 1.51
CCDC188-202ENST00000444532 USPL1Q5W0Q7 1092 aa24.48■■□□□ 1.51
CCDC188-202ENST00000444532 RRP7AQ9Y3A4 280 aaKnown RBP24.48■■□□□ 1.51
CCDC188-202ENST00000444532 NEUROD2Q15784 382 aa24.47■■□□□ 1.51
CCDC188-202ENST00000444532 BABAM1Q9NWV8 329 aa24.47■■□□□ 1.51
CCDC188-202ENST00000444532 PRAMEF22A3QJZ6 481 aa24.46■■□□□ 1.51
CCDC188-202ENST00000444532 GPR162Q16538 588 aa24.46■■□□□ 1.51
CCDC188-202ENST00000444532 NPM2Q86SE8 214 aaKnown RBP24.46■■□□□ 1.51
CCDC188-202ENST00000444532 KIF13BQ9NQT8 1826 aa24.45■■□□□ 1.5
CCDC188-202ENST00000444532 TM4SF1P30408 202 aa24.45■■□□□ 1.5
CCDC188-202ENST00000444532 EIF4A1P60842 406 aaKnown RBP24.45■■□□□ 1.5
CCDC188-202ENST00000444532 CCDC184Q52MB2 194 aa24.44■■□□□ 1.5
CCDC188-202ENST00000444532 TSPYL4Q9UJ04 414 aa24.44■■□□□ 1.5
CCDC188-202ENST00000444532 TRIM35Q9UPQ4 493 aa24.44■■□□□ 1.5
CCDC188-202ENST00000444532 GIGYF1O75420 1035 aaPredicted RBP24.43■■□□□ 1.5
CCDC188-202ENST00000444532 LAMB4A4D0S4 1761 aa24.42■■□□□ 1.5
CCDC188-202ENST00000444532 BCL2L12Q9HB09 334 aa24.42■■□□□ 1.5
CCDC188-202ENST00000444532 ZNF330Q9Y3S2 320 aaPredicted RBP24.42■■□□□ 1.5
CCDC188-202ENST00000444532 TGFB2P61812 414 aa24.41■■□□□ 1.5
CCDC188-202ENST00000444532 DDR1Q08345 913 aa24.41■■□□□ 1.5
CCDC188-202ENST00000444532 POLRMTO00411 1230 aaKnown RBP24.4■■□□□ 1.5
CCDC188-202ENST00000444532 PELP1Q8IZL8 1130 aaKnown RBP24.4■■□□□ 1.5
CCDC188-202ENST00000444532 TBC1D2BQ9UPU7 963 aa24.4■■□□□ 1.5
CCDC188-202ENST00000444532 C10orf71Q711Q0 1435 aa24.4■■□□□ 1.5
CCDC188-202ENST00000444532 APAF1O14727 1248 aa24.39■■□□□ 1.49
CCDC188-202ENST00000444532 NFIXQ14938 502 aa24.39■■□□□ 1.49
CCDC188-202ENST00000444532 MRS2Q9HD23 443 aa24.39■■□□□ 1.49
CCDC188-202ENST00000444532 SCN7AQ01118 1682 aa24.38■■□□□ 1.49
CCDC188-202ENST00000444532 NBPF26B4DH59 902 aa24.37■■□□□ 1.49
CCDC188-202ENST00000444532 CHL1O00533 1208 aa24.37■■□□□ 1.49
CCDC188-202ENST00000444532 GRIN3BO60391 1043 aa24.37■■□□□ 1.49
CCDC188-202ENST00000444532 PIP4K2AP48426 406 aaPredicted RBP24.37■■□□□ 1.49
CCDC188-202ENST00000444532 NBPF10Q6P3W6 841 aaKnown RBP24.37■■□□□ 1.49
CCDC188-202ENST00000444532 DZIP3Q86Y13 1208 aaKnown RBP24.37■■□□□ 1.49
CCDC188-202ENST00000444532 NBPF15Q8N660 670 aa24.37■■□□□ 1.49
CCDC188-202ENST00000444532 CHD4Q14839 1912 aa24.36■■□□□ 1.49
CCDC188-202ENST00000444532 CAMTA2O94983 1202 aa24.36■■□□□ 1.49
CCDC188-202ENST00000444532 YBX3P16989 372 aaKnown RBP eCLIP24.36■■□□□ 1.49
CCDC188-202ENST00000444532 YY1P25490 414 aa24.35■■□□□ 1.49
CCDC188-202ENST00000444532 AFDNP55196 1824 aaKnown RBP24.35■■□□□ 1.49
CCDC188-202ENST00000444532 KIAA1551Q9HCM1 1747 aa24.35■■□□□ 1.49
CCDC188-202ENST00000444532 BCORQ6W2J9 1755 aa24.34■■□□□ 1.49
CCDC188-202ENST00000444532 N4BP2Q86UW6 1770 aaPredicted RBP24.34■■□□□ 1.49
CCDC188-202ENST00000444532 PXDNLA1KZ92 1463 aa24.34■■□□□ 1.49
CCDC188-202ENST00000444532 LAS1LQ9Y4W2 734 aaKnown RBP24.34■■□□□ 1.49
CCDC188-202ENST00000444532 NRXN2Q9P2S2 1712 aa24.34■■□□□ 1.49
CCDC188-202ENST00000444532 SERPINB2P05120 415 aa24.33■■□□□ 1.49
CCDC188-202ENST00000444532 TBC1D9BQ66K14 1250 aa24.33■■□□□ 1.49
CCDC188-202ENST00000444532 CLEC4GQ6UXB4 293 aa24.33■■□□□ 1.49
CCDC188-202ENST00000444532 A0A0G2JLW4 131 aa24.32■■□□□ 1.48
CCDC188-202ENST00000444532 RGL2O15211 777 aa24.32■■□□□ 1.48
CCDC188-202ENST00000444532 CALD1Q05682 793 aaKnown RBP24.32■■□□□ 1.48
CCDC188-202ENST00000444532 BICDL1Q6ZP65 573 aa24.32■■□□□ 1.48
CCDC188-202ENST00000444532 CFAP44Q96MT7 982 aa24.32■■□□□ 1.48
CCDC188-202ENST00000444532 ERBB4Q15303 1308 aa24.32■■□□□ 1.48
CCDC188-202ENST00000444532 ZNF652Q9Y2D9 606 aa24.31■■□□□ 1.48
CCDC188-202ENST00000444532 DPEP1P16444 411 aa24.3■■□□□ 1.48
CCDC188-202ENST00000444532 SETDB2Q96T68 719 aa24.3■■□□□ 1.48
CCDC188-202ENST00000444532 CARMIL3Q8ND23 1372 aa24.29■■□□□ 1.48
CCDC188-202ENST00000444532 ZNF853P0CG23 659 aa24.28■■□□□ 1.48
CCDC188-202ENST00000444532 MYL6BP14649 208 aa24.27■■□□□ 1.48
CCDC188-202ENST00000444532 EIF2S2P20042 333 aaKnown RBP24.27■■□□□ 1.48
CCDC188-202ENST00000444532 KCNA3P22001 575 aa24.27■■□□□ 1.48
CCDC188-202ENST00000444532 IFT57Q9NWB7 429 aa24.27■■□□□ 1.48
CCDC188-202ENST00000444532 BRCA1P38398 1863 aaKnown RBP24.27■■□□□ 1.48
CCDC188-202ENST00000444532 ERVV-1B6SEH8 477 aa24.26■■□□□ 1.47
CCDC188-202ENST00000444532 GNAI1P63096 354 aa24.26■■□□□ 1.47
CCDC188-202ENST00000444532 CCDC27Q2M243 656 aa24.26■■□□□ 1.47
CCDC188-202ENST00000444532 NCBP3Q53F19 620 aaKnown RBP24.26■■□□□ 1.47
CCDC188-202ENST00000444532 NGEFQ8N5V2 710 aa24.26■■□□□ 1.47
CCDC188-202ENST00000444532 WWC3Q9ULE0 1092 aa24.26■■□□□ 1.47
CCDC188-202ENST00000444532 GOLGB1Q14789 3259 aaKnown RBP24.25■■□□□ 1.47
CCDC188-202ENST00000444532 MBIPQ9NS73 344 aa24.25■■□□□ 1.47
CCDC188-202ENST00000444532 PIM2Q9P1W9 311 aa24.25■■□□□ 1.47
CCDC188-202ENST00000444532 HOXB7P09629 217 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms