RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 RNF166Q96A37 237 aaPredicted RBP10.5□□□□□ -0.73
CD44-211ENST00000442151 ATG3Q9NT62 314 aa10.5□□□□□ -0.73
CD44-211ENST00000442151 PCDHB13Q9Y5F0 798 aa10.5□□□□□ -0.73
CD44-211ENST00000442151 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.49□□□□□ -0.73
CD44-211ENST00000442151 POTEB3A0JP26 581 aa10.49□□□□□ -0.73
CD44-211ENST00000442151 POTEBQ6S5H4 581 aa10.49□□□□□ -0.73
CD44-211ENST00000442151 NLGN1Q8N2Q7 840 aa10.49□□□□□ -0.73
CD44-211ENST00000442151 ASAP1Q9ULH1 1129 aa10.49□□□□□ -0.73
CD44-211ENST00000442151 AKAP4Q5JQC9 854 aa10.49□□□□□ -0.73
CD44-211ENST00000442151 GNPATO15228 680 aa10.48□□□□□ -0.73
CD44-211ENST00000442151 DIAPH1O60610 1272 aaKnown RBP10.48□□□□□ -0.73
CD44-211ENST00000442151 IL13P35225 146 aa10.48□□□□□ -0.73
CD44-211ENST00000442151 AMER1Q5JTC6 1135 aaPredicted RBP10.48□□□□□ -0.73
CD44-211ENST00000442151 OCEL1Q9H607 264 aa10.48□□□□□ -0.73
CD44-211ENST00000442151 ITGB4P16144 1822 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 KIF7Q2M1P5 1343 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 PHF14O94880 888 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 RFC4P35249 363 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 CFAP53Q96M91 514 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 C5P01031 1676 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 NPC1L1Q9UHC9 1359 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 COL24A1Q17RW2 1714 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 MSL1Q68DK7 614 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 LINC00116Q8NCU8 138 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 TMEM106CQ9BVX2 250 aa10.47□□□□□ -0.73
CD44-211ENST00000442151 RPS6KA4O75676 772 aa10.46□□□□□ -0.74
CD44-211ENST00000442151 ZNF784Q8NCA9 323 aaPredicted RBP10.46□□□□□ -0.74
CD44-211ENST00000442151 C4BP0C0L5 1744 aa10.46□□□□□ -0.74
CD44-211ENST00000442151 CNTNAP4Q9C0A0 1308 aa10.45□□□□□ -0.74
CD44-211ENST00000442151 CHD4Q14839 1912 aa10.45□□□□□ -0.74
CD44-211ENST00000442151 TGFB2P61812 414 aa10.45□□□□□ -0.74
CD44-211ENST00000442151 CCDC87Q9NVE4 849 aa10.45□□□□□ -0.74
CD44-211ENST00000442151 NUDCQ9Y266 331 aa10.45□□□□□ -0.74
CD44-211ENST00000442151 KDRP35968 1356 aa10.45□□□□□ -0.74
CD44-211ENST00000442151 UTRNP46939 3433 aa10.44□□□□□ -0.74
CD44-211ENST00000442151 PER1O15534 1290 aaPredicted RBP10.44□□□□□ -0.74
CD44-211ENST00000442151 ITPK1Q13572 414 aa10.44□□□□□ -0.74
CD44-211ENST00000442151 RASEFQ8IZ41 740 aa10.44□□□□□ -0.74
CD44-211ENST00000442151 NFATC2IPQ8NCF5 419 aa10.44□□□□□ -0.74
CD44-211ENST00000442151 PARP3Q9Y6F1 533 aa10.44□□□□□ -0.74
CD44-211ENST00000442151 TAF1LQ8IZX4 1826 aa10.44□□□□□ -0.74
CD44-211ENST00000442151 CC2D1BQ5T0F9 858 aaKnown RBP10.44□□□□□ -0.74
CD44-211ENST00000442151 NLGN2Q8NFZ4 835 aa10.44□□□□□ -0.74
CD44-211ENST00000442151 GAS2L2Q8NHY3 880 aa10.43□□□□□ -0.74
CD44-211ENST00000442151 TEX13AQ9BXU3 409 aaPredicted RBP10.43□□□□□ -0.74
CD44-211ENST00000442151 SLC52A2Q9HAB3 445 aa10.43□□□□□ -0.74
CD44-211ENST00000442151 RNMTO43148 476 aaKnown RBP10.42□□□□□ -0.74
CD44-211ENST00000442151 PTCD1O75127 700 aaKnown RBP10.42□□□□□ -0.74
CD44-211ENST00000442151 AEBP1Q8IUX7 1158 aa10.42□□□□□ -0.74
CD44-211ENST00000442151 ZNF831Q5JPB2 1677 aa10.42□□□□□ -0.74
CD44-211ENST00000442151 TUBGCP6Q96RT7 1819 aa10.42□□□□□ -0.74
CD44-211ENST00000442151 TOGARAM1Q9Y4F4 1720 aa10.42□□□□□ -0.74
CD44-211ENST00000442151 ZPR1O75312 459 aa10.42□□□□□ -0.74
CD44-211ENST00000442151 NEFMP07197 916 aa10.42□□□□□ -0.74
CD44-211ENST00000442151 MMP10P09238 476 aa10.42□□□□□ -0.74
CD44-211ENST00000442151 NPM2Q86SE8 214 aaKnown RBP10.42□□□□□ -0.74
CD44-211ENST00000442151 VSIG10Q8N0Z9 540 aa10.42□□□□□ -0.74
CD44-211ENST00000442151 ARHGEF1Q92888 912 aaKnown RBP10.42□□□□□ -0.74
CD44-211ENST00000442151 U2SURPO15042 1029 aaKnown RBP10.41□□□□□ -0.74
CD44-211ENST00000442151 GIGYF1O75420 1035 aaPredicted RBP10.41□□□□□ -0.74
CD44-211ENST00000442151 STARD3NLO95772 234 aa10.41□□□□□ -0.74
CD44-211ENST00000442151 HMOX1P09601 288 aa10.41□□□□□ -0.74
CD44-211ENST00000442151 TTC5Q8N0Z6 440 aa10.41□□□□□ -0.74
CD44-211ENST00000442151 A0A087WZG4 1122 aa10.4□□□□□ -0.74
CD44-211ENST00000442151 TEFQ10587 303 aa10.4□□□□□ -0.74
CD44-211ENST00000442151 GNAT3A8MTJ3 354 aa10.4□□□□□ -0.75
CD44-211ENST00000442151 CRKLP46109 303 aaKnown RBP10.4□□□□□ -0.75
CD44-211ENST00000442151 PNNQ9H307 717 aaKnown RBP10.4□□□□□ -0.75
CD44-211ENST00000442151 KDM6AO15550 1401 aaPredicted RBP10.4□□□□□ -0.75
CD44-211ENST00000442151 UBR3Q6ZT12 1888 aa10.39□□□□□ -0.75
CD44-211ENST00000442151 YBX3P16989 372 aaKnown RBP eCLIP10.39□□□□□ -0.75
CD44-211ENST00000442151 C1QTNF8P60827 252 aa10.39□□□□□ -0.75
CD44-211ENST00000442151 GYS1P13807 737 aa10.38□□□□□ -0.75
CD44-211ENST00000442151 MTHFSDQ2M296 383 aaKnown RBP10.38□□□□□ -0.75
CD44-211ENST00000442151 IFNL1Q8IU54 200 aa10.37□□□□□ -0.75
CD44-211ENST00000442151 RTF1Q92541 710 aaKnown RBP10.37□□□□□ -0.75
CD44-211ENST00000442151 SLC4A9Q96Q91 983 aa10.37□□□□□ -0.75
CD44-211ENST00000442151 LGR6Q9HBX8 967 aa10.37□□□□□ -0.75
CD44-211ENST00000442151 PDZRN3Q9UPQ7 1066 aa10.37□□□□□ -0.75
CD44-211ENST00000442151 GPBP1L1Q9HC44 474 aaPredicted RBP10.37□□□□□ -0.75
CD44-211ENST00000442151 PIM2Q9P1W9 311 aa10.37□□□□□ -0.75
CD44-211ENST00000442151 HTATSF1O43719 755 aaKnown RBP10.36□□□□□ -0.75
CD44-211ENST00000442151 FCHSD2O94868 740 aa10.36□□□□□ -0.75
CD44-211ENST00000442151 C3orf67Q6ZVT6 689 aa10.36□□□□□ -0.75
CD44-211ENST00000442151 AMIGO3Q86WK7 504 aa10.36□□□□□ -0.75
CD44-211ENST00000442151 DNAJC10Q8IXB1 793 aa10.36□□□□□ -0.75
CD44-211ENST00000442151 USP42Q9H9J4 1324 aaKnown RBP10.36□□□□□ -0.75
CD44-211ENST00000442151 CYP19A1P11511 503 aaPredicted RBP10.35□□□□□ -0.75
CD44-211ENST00000442151 CNGB1Q14028 1251 aaPredicted RBP10.35□□□□□ -0.75
CD44-211ENST00000442151 INTS5Q6P9B9 1019 aaKnown RBP10.35□□□□□ -0.75
CD44-211ENST00000442151 NARFQ9UHQ1 456 aa10.35□□□□□ -0.75
CD44-211ENST00000442151 BCS1LQ9Y276 419 aa10.35□□□□□ -0.75
CD44-211ENST00000442151 SCN11AQ9UI33 1791 aa10.35□□□□□ -0.75
CD44-211ENST00000442151 SMIM5Q71RC9 77 aa10.35□□□□□ -0.75
CD44-211ENST00000442151 FMNL2Q96PY5 1086 aa10.35□□□□□ -0.75
CD44-211ENST00000442151 U2AF1L5P0DN76 240 aaPredicted RBP10.34□□□□□ -0.75
CD44-211ENST00000442151 U2AF1Q01081 240 aaKnown RBP eCLIP10.34□□□□□ -0.75
CD44-211ENST00000442151 SLC39A6Q13433 755 aa10.34□□□□□ -0.75
CD44-211ENST00000442151 DALRD3Q5D0E6 543 aaKnown RBP10.34□□□□□ -0.75
CD44-211ENST00000442151 ARHGAP27Q6ZUM4 889 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms