RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 KANK1Q14678 1352 aa7.41□□□□□ -1.22
PTPN4-206ENST00000441089 RPRD2Q5VT52 1461 aaKnown RBP7.41□□□□□ -1.22
PTPN4-206ENST00000441089 RGPD1P0DJD0 1748 aa7.41□□□□□ -1.22
PTPN4-206ENST00000441089 LINC01559Q495D7 138 aa7.4□□□□□ -1.22
PTPN4-206ENST00000441089 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.4□□□□□ -1.22
PTPN4-206ENST00000441089 WASF2Q9Y6W5 498 aa7.4□□□□□ -1.22
PTPN4-206ENST00000441089 NINLQ9Y2I6 1382 aa7.4□□□□□ -1.22
PTPN4-206ENST00000441089 ZFYVE9O95405 1425 aa7.4□□□□□ -1.22
PTPN4-206ENST00000441089 VPS8Q8N3P4 1428 aa7.4□□□□□ -1.22
PTPN4-206ENST00000441089 RALGAPBQ86X10 1494 aa7.4□□□□□ -1.22
PTPN4-206ENST00000441089 TRPM2O94759 1503 aa7.4□□□□□ -1.22
PTPN4-206ENST00000441089 DUOX2Q9NRD8 1548 aa7.4□□□□□ -1.22
PTPN4-206ENST00000441089 GLI3P10071 1580 aa7.4□□□□□ -1.22
PTPN4-206ENST00000441089 RIMS2Q9UQ26 1411 aa7.39□□□□□ -1.23
PTPN4-206ENST00000441089 DDX17Q92841 729 aaKnown RBP7.39□□□□□ -1.23
PTPN4-206ENST00000441089 PPP1R1BQ9UD71 204 aaPredicted RBP7.39□□□□□ -1.23
PTPN4-206ENST00000441089 GCC2Q8IWJ2 1684 aa7.38□□□□□ -1.23
PTPN4-206ENST00000441089 SOS2Q07890 1332 aaPredicted RBP7.38□□□□□ -1.23
PTPN4-206ENST00000441089 USP46P62068 366 aa7.38□□□□□ -1.23
PTPN4-206ENST00000441089 KRT27Q7Z3Y8 459 aa7.38□□□□□ -1.23
PTPN4-206ENST00000441089 PURBQ96QR8 312 aaKnown RBP7.38□□□□□ -1.23
PTPN4-206ENST00000441089 AMOTL2Q9Y2J4 779 aa7.38□□□□□ -1.23
PTPN4-206ENST00000441089 MYOM2P54296 1465 aa7.37□□□□□ -1.23
PTPN4-206ENST00000441089 NOS1P29475 1434 aa7.37□□□□□ -1.23
PTPN4-206ENST00000441089 ADAMTS13Q76LX8 1427 aa7.37□□□□□ -1.23
PTPN4-206ENST00000441089 TIMP2P16035 220 aa7.37□□□□□ -1.23
PTPN4-206ENST00000441089 MAP2K5Q13163 448 aa7.37□□□□□ -1.23
PTPN4-206ENST00000441089 RETREG3Q86VR2 466 aa7.37□□□□□ -1.23
PTPN4-206ENST00000441089 UNC5CLQ8IV45 518 aa7.37□□□□□ -1.23
PTPN4-206ENST00000441089 SEPT12Q8IYM1 358 aa7.37□□□□□ -1.23
PTPN4-206ENST00000441089 KLF16Q9BXK1 252 aaPredicted RBP7.37□□□□□ -1.23
PTPN4-206ENST00000441089 LMTK2Q8IWU2 1503 aa7.37□□□□□ -1.23
PTPN4-206ENST00000441089 ERBINQ96RT1 1412 aa7.36□□□□□ -1.23
PTPN4-206ENST00000441089 TULP1O00294 542 aaPredicted RBP7.36□□□□□ -1.23
PTPN4-206ENST00000441089 IRF6O14896 467 aa7.36□□□□□ -1.23
PTPN4-206ENST00000441089 VSIG8P0DPA2 414 aa7.36□□□□□ -1.23
PTPN4-206ENST00000441089 NNTQ13423 1086 aa7.36□□□□□ -1.23
PTPN4-206ENST00000441089 MRPL14Q6P1L8 145 aaKnown RBP7.36□□□□□ -1.23
PTPN4-206ENST00000441089 BAP1Q92560 729 aa7.36□□□□□ -1.23
PTPN4-206ENST00000441089 UNC93B1Q9H1C4 597 aa7.36□□□□□ -1.23
PTPN4-206ENST00000441089 ADGRL3Q9HAR2 1447 aa7.35□□□□□ -1.23
PTPN4-206ENST00000441089 XRN1Q8IZH2 1706 aaKnown RBP7.35□□□□□ -1.23
PTPN4-206ENST00000441089 KCTD17Q8N5Z5 321 aa7.35□□□□□ -1.23
PTPN4-206ENST00000441089 FAM217BQ9NTX9 383 aaPredicted RBP7.35□□□□□ -1.23
PTPN4-206ENST00000441089 NALCNQ8IZF0 1738 aa7.35□□□□□ -1.23
PTPN4-206ENST00000441089 DISP2A7MBM2 1401 aa7.35□□□□□ -1.23
PTPN4-206ENST00000441089 CAMTA1Q9Y6Y1 1673 aa7.35□□□□□ -1.23
PTPN4-206ENST00000441089 TMEM131LA2VDJ0 1609 aa7.34□□□□□ -1.23
PTPN4-206ENST00000441089 SLIT2O94813 1529 aa7.34□□□□□ -1.23
PTPN4-206ENST00000441089 CCNYL3P0C7X3 344 aa7.34□□□□□ -1.23
PTPN4-206ENST00000441089 SPON1Q9HCB6 807 aa7.34□□□□□ -1.23
PTPN4-206ENST00000441089 C1orf167Q5SNV9 1468 aa7.34□□□□□ -1.23
PTPN4-206ENST00000441089 PTPN23Q9H3S7 1636 aa7.34□□□□□ -1.24
PTPN4-206ENST00000441089 PARD3Q8TEW0 1356 aa7.33□□□□□ -1.24
PTPN4-206ENST00000441089 ADGRB2O60241 1585 aa7.33□□□□□ -1.24
PTPN4-206ENST00000441089 NWD2Q9ULI1 1742 aa7.33□□□□□ -1.24
PTPN4-206ENST00000441089 CCDC102AQ96A19 550 aa7.33□□□□□ -1.24
PTPN4-206ENST00000441089 PTPRUQ92729 1446 aa7.33□□□□□ -1.24
PTPN4-206ENST00000441089 KIF15Q9NS87 1388 aa7.33□□□□□ -1.24
PTPN4-206ENST00000441089 TNS1Q9HBL0 1735 aaKnown RBP7.32□□□□□ -1.24
PTPN4-206ENST00000441089 GIGYF1O75420 1035 aaPredicted RBP7.32□□□□□ -1.24
PTPN4-206ENST00000441089 FDX1P10109 184 aa7.32□□□□□ -1.24
PTPN4-206ENST00000441089 MS4A1P11836 297 aa7.32□□□□□ -1.24
PTPN4-206ENST00000441089 WDR4P57081 412 aaKnown RBP7.32□□□□□ -1.24
PTPN4-206ENST00000441089 KRT76Q01546 638 aa7.32□□□□□ -1.24
PTPN4-206ENST00000441089 VPS72Q15906 364 aa7.32□□□□□ -1.24
PTPN4-206ENST00000441089 ZNF511Q8NB15 262 aa7.32□□□□□ -1.24
PTPN4-206ENST00000441089 ZFAND3Q9H8U3 227 aa7.32□□□□□ -1.24
PTPN4-206ENST00000441089 NPHP3Q7Z494 1330 aa7.31□□□□□ -1.24
PTPN4-206ENST00000441089 KCNQ2O43526 872 aa7.31□□□□□ -1.24
PTPN4-206ENST00000441089 NDUFV2P19404 249 aa7.31□□□□□ -1.24
PTPN4-206ENST00000441089 NBPF8Q3BBV2 869 aa7.31□□□□□ -1.24
PTPN4-206ENST00000441089 NBPF14Q5TI25 921 aa7.31□□□□□ -1.24
PTPN4-206ENST00000441089 PPARGC1BQ86YN6 1023 aaKnown RBP7.31□□□□□ -1.24
PTPN4-206ENST00000441089 EVA1BQ9NVM1 165 aa7.31□□□□□ -1.24
PTPN4-206ENST00000441089 CCDC9Q9Y3X0 531 aaKnown RBP7.31□□□□□ -1.24
PTPN4-206ENST00000441089 C6orf229H3BNL8 230 aa7.3□□□□□ -1.24
PTPN4-206ENST00000441089 NR3C2P08235 984 aa7.3□□□□□ -1.24
PTPN4-206ENST00000441089 KCNMA1Q12791 1236 aa7.3□□□□□ -1.24
PTPN4-206ENST00000441089 EZH2Q15910 746 aaKnown RBP7.3□□□□□ -1.24
PTPN4-206ENST00000441089 KANK4Q5T7N3 995 aaPredicted RBP7.3□□□□□ -1.24
PTPN4-206ENST00000441089 ORAI2Q96SN7 254 aa7.3□□□□□ -1.24
PTPN4-206ENST00000441089 USP32Q8NFA0 1604 aa7.3□□□□□ -1.24
PTPN4-206ENST00000441089 PLCH1Q4KWH8 1693 aa7.29□□□□□ -1.24
PTPN4-206ENST00000441089 RREB1Q92766 1687 aa7.29□□□□□ -1.24
PTPN4-206ENST00000441089 ADH1CP00326 375 aa7.29□□□□□ -1.24
PTPN4-206ENST00000441089 KCNH2Q12809 1159 aa7.29□□□□□ -1.24
PTPN4-206ENST00000441089 PTPRNQ16849 979 aa7.29□□□□□ -1.24
PTPN4-206ENST00000441089 GPR161Q8N6U8 529 aaKnown RBP7.29□□□□□ -1.24
PTPN4-206ENST00000441089 GPCPD1Q9NPB8 672 aa7.29□□□□□ -1.24
PTPN4-206ENST00000441089 MYOM3Q5VTT5 1437 aa7.28□□□□□ -1.24
PTPN4-206ENST00000441089 NUP188Q5SRE5 1749 aa7.28□□□□□ -1.24
PTPN4-206ENST00000441089 PPFIA3O75145 1194 aa7.28□□□□□ -1.24
PTPN4-206ENST00000441089 C6orf118Q5T5N4 469 aa7.28□□□□□ -1.24
PTPN4-206ENST00000441089 MPNDQ8N594 471 aa7.28□□□□□ -1.24
PTPN4-206ENST00000441089 FOXJ1Q92949 421 aa7.28□□□□□ -1.24
PTPN4-206ENST00000441089 ITPKCQ96DU7 683 aa7.28□□□□□ -1.24
PTPN4-206ENST00000441089 CAMKK2Q96RR4 588 aa7.28□□□□□ -1.24
PTPN4-206ENST00000441089 LRPPRCP42704 1394 aaKnown RBP7.28□□□□□ -1.24
PTPN4-206ENST00000441089 CROCC2H7BZ55 1655 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 136.5 ms