RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MMP10P09238 476 aa20.02■□□□□ 0.8
LIMS3-201ENST00000437679 CANXP27824 592 aaKnown RBP20.02■□□□□ 0.8
LIMS3-201ENST00000437679 CCDC146Q8IYE0 955 aa20.02■□□□□ 0.8
LIMS3-201ENST00000437679 ADAMTS8Q9UP79 889 aa20.02■□□□□ 0.8
LIMS3-201ENST00000437679 CD2APQ9Y5K6 639 aa20.02■□□□□ 0.8
LIMS3-201ENST00000437679 USP42Q9H9J4 1324 aaKnown RBP20.02■□□□□ 0.79
LIMS3-201ENST00000437679 ZPR1O75312 459 aa20.01■□□□□ 0.79
LIMS3-201ENST00000437679 TMPOP42166 694 aaKnown RBP20.01■□□□□ 0.79
LIMS3-201ENST00000437679 LMOD3Q0VAK6 560 aa20.01■□□□□ 0.79
LIMS3-201ENST00000437679 RUNDC1Q96C34 613 aa20.01■□□□□ 0.79
LIMS3-201ENST00000437679 SRP68Q9UHB9 627 aaKnown RBP20.01■□□□□ 0.79
LIMS3-201ENST00000437679 COL15A1P39059 1388 aa20■□□□□ 0.79
LIMS3-201ENST00000437679 SNRPA1P09661 255 aaKnown RBP20■□□□□ 0.79
LIMS3-201ENST00000437679 NLGN2Q8NFZ4 835 aa20■□□□□ 0.79
LIMS3-201ENST00000437679 THUMPD2Q9BTF0 503 aaKnown RBP20■□□□□ 0.79
LIMS3-201ENST00000437679 MIS18AQ9NYP9 233 aa20■□□□□ 0.79
LIMS3-201ENST00000437679 ANP32CO43423 234 aa19.99■□□□□ 0.79
LIMS3-201ENST00000437679 A0A087WZG4 1122 aa19.98■□□□□ 0.79
LIMS3-201ENST00000437679 NEUROD2Q15784 382 aa19.98■□□□□ 0.79
LIMS3-201ENST00000437679 NPM2Q86SE8 214 aaKnown RBP19.98■□□□□ 0.79
LIMS3-201ENST00000437679 NARFQ9UHQ1 456 aa19.98■□□□□ 0.79
LIMS3-201ENST00000437679 RRP7AQ9Y3A4 280 aaKnown RBP19.98■□□□□ 0.79
LIMS3-201ENST00000437679 PARP3Q9Y6F1 533 aa19.98■□□□□ 0.79
LIMS3-201ENST00000437679 A1BGP04217 495 aa19.97■□□□□ 0.79
LIMS3-201ENST00000437679 EIF5P55010 431 aaKnown RBP19.97■□□□□ 0.79
LIMS3-201ENST00000437679 FKBP8Q14318 412 aa19.97■□□□□ 0.79
LIMS3-201ENST00000437679 GPR162Q16538 588 aa19.97■□□□□ 0.79
LIMS3-201ENST00000437679 USPL1Q5W0Q7 1092 aa19.97■□□□□ 0.79
LIMS3-201ENST00000437679 IL6STP40189 918 aaPredicted RBP19.96■□□□□ 0.79
LIMS3-201ENST00000437679 PELP1Q8IZL8 1130 aaKnown RBP19.96■□□□□ 0.79
LIMS3-201ENST00000437679 ZNF330Q9Y3S2 320 aaPredicted RBP19.96■□□□□ 0.79
LIMS3-201ENST00000437679 USP16Q9Y5T5 823 aa19.96■□□□□ 0.79
LIMS3-201ENST00000437679 KDM3BQ7LBC6 1761 aa19.95■□□□□ 0.78
LIMS3-201ENST00000437679 PRAMEF22A3QJZ6 481 aa19.94■□□□□ 0.78
LIMS3-201ENST00000437679 TSPYL4Q9UJ04 414 aa19.94■□□□□ 0.78
LIMS3-201ENST00000437679 EIF4A1P60842 406 aaKnown RBP19.92■□□□□ 0.78
LIMS3-201ENST00000437679 BABAM1Q9NWV8 329 aa19.92■□□□□ 0.78
LIMS3-201ENST00000437679 TM4SF1P30408 202 aa19.91■□□□□ 0.78
LIMS3-201ENST00000437679 DDR1Q08345 913 aa19.91■□□□□ 0.78
LIMS3-201ENST00000437679 CCDC184Q52MB2 194 aa19.91■□□□□ 0.78
LIMS3-201ENST00000437679 TBC1D2BQ9UPU7 963 aa19.91■□□□□ 0.78
LIMS3-201ENST00000437679 GIGYF1O75420 1035 aaPredicted RBP19.9■□□□□ 0.78
LIMS3-201ENST00000437679 PIP4K2AP48426 406 aaPredicted RBP19.9■□□□□ 0.78
LIMS3-201ENST00000437679 BCL2L12Q9HB09 334 aa19.9■□□□□ 0.78
LIMS3-201ENST00000437679 TRIM35Q9UPQ4 493 aa19.9■□□□□ 0.78
LIMS3-201ENST00000437679 C10orf71Q711Q0 1435 aa19.9■□□□□ 0.78
LIMS3-201ENST00000437679 LAMB4A4D0S4 1761 aa19.89■□□□□ 0.77
LIMS3-201ENST00000437679 POLRMTO00411 1230 aaKnown RBP19.89■□□□□ 0.77
LIMS3-201ENST00000437679 APAF1O14727 1248 aa19.89■□□□□ 0.77
LIMS3-201ENST00000437679 YY1P25490 414 aa19.89■□□□□ 0.77
LIMS3-201ENST00000437679 TGFB2P61812 414 aa19.89■□□□□ 0.77
LIMS3-201ENST00000437679 NFIXQ14938 502 aa19.89■□□□□ 0.77
LIMS3-201ENST00000437679 MRS2Q9HD23 443 aa19.89■□□□□ 0.77
LIMS3-201ENST00000437679 KIF13BQ9NQT8 1826 aa19.89■□□□□ 0.77
LIMS3-201ENST00000437679 UTRNP46939 3433 aa19.88■□□□□ 0.77
LIMS3-201ENST00000437679 GRIN3BO60391 1043 aa19.88■□□□□ 0.77
LIMS3-201ENST00000437679 DZIP3Q86Y13 1208 aaKnown RBP19.88■□□□□ 0.77
LIMS3-201ENST00000437679 LAS1LQ9Y4W2 734 aaKnown RBP19.87■□□□□ 0.77
LIMS3-201ENST00000437679 CHD4Q14839 1912 aa19.86■□□□□ 0.77
LIMS3-201ENST00000437679 NBPF26B4DH59 902 aa19.86■□□□□ 0.77
LIMS3-201ENST00000437679 YBX3P16989 372 aaKnown RBP eCLIP19.86■□□□□ 0.77
LIMS3-201ENST00000437679 NBPF10Q6P3W6 841 aaKnown RBP19.86■□□□□ 0.77
LIMS3-201ENST00000437679 BICDL1Q6ZP65 573 aa19.86■□□□□ 0.77
LIMS3-201ENST00000437679 NBPF15Q8N660 670 aa19.86■□□□□ 0.77
LIMS3-201ENST00000437679 SCN7AQ01118 1682 aa19.86■□□□□ 0.77
LIMS3-201ENST00000437679 GOLGB1Q14789 3259 aaKnown RBP19.86■□□□□ 0.77
LIMS3-201ENST00000437679 CAMTA2O94983 1202 aa19.85■□□□□ 0.77
LIMS3-201ENST00000437679 PXDNLA1KZ92 1463 aa19.85■□□□□ 0.77
LIMS3-201ENST00000437679 CHL1O00533 1208 aa19.84■□□□□ 0.77
LIMS3-201ENST00000437679 SERPINB2P05120 415 aa19.84■□□□□ 0.77
LIMS3-201ENST00000437679 TBC1D9BQ66K14 1250 aa19.84■□□□□ 0.77
LIMS3-201ENST00000437679 WWC3Q9ULE0 1092 aa19.84■□□□□ 0.77
LIMS3-201ENST00000437679 AFDNP55196 1824 aaKnown RBP19.83■□□□□ 0.77
LIMS3-201ENST00000437679 N4BP2Q86UW6 1770 aaPredicted RBP19.83■□□□□ 0.77
LIMS3-201ENST00000437679 A0A0G2JLW4 131 aa19.83■□□□□ 0.77
LIMS3-201ENST00000437679 DPEP1P16444 411 aa19.83■□□□□ 0.77
LIMS3-201ENST00000437679 CALD1Q05682 793 aaKnown RBP19.83■□□□□ 0.77
LIMS3-201ENST00000437679 ZNF652Q9Y2D9 606 aa19.83■□□□□ 0.77
LIMS3-201ENST00000437679 SETDB2Q96T68 719 aa19.82■□□□□ 0.76
LIMS3-201ENST00000437679 BCORQ6W2J9 1755 aa19.82■□□□□ 0.76
LIMS3-201ENST00000437679 KIAA1551Q9HCM1 1747 aa19.82■□□□□ 0.76
LIMS3-201ENST00000437679 ERBB4Q15303 1308 aa19.81■□□□□ 0.76
LIMS3-201ENST00000437679 EIF2S2P20042 333 aaKnown RBP19.81■□□□□ 0.76
LIMS3-201ENST00000437679 CLEC4GQ6UXB4 293 aa19.81■□□□□ 0.76
LIMS3-201ENST00000437679 NGEFQ8N5V2 710 aa19.81■□□□□ 0.76
LIMS3-201ENST00000437679 CFAP44Q96MT7 982 aa19.81■□□□□ 0.76
LIMS3-201ENST00000437679 NRXN2Q9P2S2 1712 aa19.81■□□□□ 0.76
LIMS3-201ENST00000437679 CARMIL3Q8ND23 1372 aa19.81■□□□□ 0.76
LIMS3-201ENST00000437679 RGL2O15211 777 aa19.8■□□□□ 0.76
LIMS3-201ENST00000437679 MYL6BP14649 208 aa19.8■□□□□ 0.76
LIMS3-201ENST00000437679 BCS1LQ9Y276 419 aa19.79■□□□□ 0.76
LIMS3-201ENST00000437679 NPHP1O15259 732 aa19.78■□□□□ 0.76
LIMS3-201ENST00000437679 KIF6Q6ZMV9 814 aa19.78■□□□□ 0.76
LIMS3-201ENST00000437679 IFT57Q9NWB7 429 aa19.78■□□□□ 0.76
LIMS3-201ENST00000437679 PIM2Q9P1W9 311 aa19.78■□□□□ 0.76
LIMS3-201ENST00000437679 KCNA3P22001 575 aa19.77■□□□□ 0.76
LIMS3-201ENST00000437679 CHRNA5P30532 468 aa19.77■□□□□ 0.76
LIMS3-201ENST00000437679 GNAI1P63096 354 aa19.77■□□□□ 0.76
LIMS3-201ENST00000437679 ERVV-1B6SEH8 477 aa19.76■□□□□ 0.75
LIMS3-201ENST00000437679 ZNF853P0CG23 659 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms