RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TSG101Q99816 390 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 THEGQ9P2T0 379 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 RABGAP1Q9Y3P9 1069 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 RASSF2P50749 326 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 SEPT14Q6ZU15 432 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 RBM27Q9P2N5 1060 aaKnown RBP8.3□□□□□ -1.08
VPS53-204ENST00000437048 MSL1Q68DK7 614 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 NAP1L3Q99457 506 aaPredicted RBP8.3□□□□□ -1.08
VPS53-204ENST00000437048 TCHPQ9BT92 498 aa8.3□□□□□ -1.08
VPS53-204ENST00000437048 TIAM1Q13009 1591 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 CFAP100Q494V2 611 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 CACNA2D3Q8IZS8 1091 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 ZNF526Q8TF50 670 aaPredicted RBP8.29□□□□□ -1.08
VPS53-204ENST00000437048 LMBR1Q8WVP7 490 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 FKBP5Q13451 457 aaPredicted RBP8.29□□□□□ -1.08
VPS53-204ENST00000437048 VPS37DQ86XT2 251 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 LMNTD2Q8IXW0 634 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 HSF2BPO75031 334 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 SLU7O95391 586 aaKnown RBP8.29□□□□□ -1.08
VPS53-204ENST00000437048 TSNAXIP1Q2TAA8 658 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 KLHL10Q6JEL2 608 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 PHLDB2Q86SQ0 1253 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 GTF2E1P29083 439 aaPredicted RBP8.29□□□□□ -1.08
VPS53-204ENST00000437048 LACTBP83111 547 aaPredicted RBP8.29□□□□□ -1.08
VPS53-204ENST00000437048 TNNT1P13805 278 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 BMP2KLQ5H9B9 411 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 PPFIBP2Q8ND30 876 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 BCL2L13Q9BXK5 485 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 FBF1Q8TES7 1133 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 FIBPO43427 364 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 CCDC158Q5M9N0 1113 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 SNX21Q969T3 373 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 CUL7Q14999 1698 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 SMC6Q96SB8 1091 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 AKAP2Q9Y2D5 859 aa8.29□□□□□ -1.08
VPS53-204ENST00000437048 FOSBP53539 338 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 RIPK4P57078 832 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 NBPF11Q86T75 865 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 SOS1Q07889 1333 aaPredicted RBP8.28□□□□□ -1.08
VPS53-204ENST00000437048 GLRX3O76003 335 aaKnown RBP8.28□□□□□ -1.08
VPS53-204ENST00000437048 FERP16591 822 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 EIF5P55010 431 aaKnown RBP8.28□□□□□ -1.08
VPS53-204ENST00000437048 PDE6BP35913 854 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 FAM200AQ8TCP9 573 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 CCDC12Q8WUD4 166 aaPredicted RBP8.28□□□□□ -1.08
VPS53-204ENST00000437048 SELENOOQ9BVL4 669 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 VCX3BQ9H321 246 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 ZFYVE27Q5T4F4 411 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 ZMYND15Q9H091 742 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 IL16Q14005 1332 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 WIZO95785 1651 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 KRT83P78385 493 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 NBPF7P0C2Y1 421 aaPredicted RBP8.28□□□□□ -1.08
VPS53-204ENST00000437048 KIF4BQ2VIQ3 1234 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 TSGA10Q9BZW7 698 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 STMN1P16949 149 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 MAP7Q14244 749 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 ARMC9Q7Z3E5 817 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 ZC3H15Q8WU90 426 aaKnown RBP8.28□□□□□ -1.08
VPS53-204ENST00000437048 FBXO3Q9UK99 471 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 CACNA2D4Q7Z3S7 1137 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 TAX1BP1Q86VP1 789 aa8.28□□□□□ -1.08
VPS53-204ENST00000437048 CHD1LQ86WJ1 897 aa8.27□□□□□ -1.08
VPS53-204ENST00000437048 RBM26Q5T8P6 1007 aaKnown RBP8.27□□□□□ -1.08
VPS53-204ENST00000437048 FSD1Q9BTV5 496 aa8.27□□□□□ -1.08
VPS53-204ENST00000437048 ANKRD50Q9ULJ7 1429 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 KIAA1107Q9UPP5 1409 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 ERCC6LQ2NKX8 1250 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 LRPPRCP42704 1394 aaKnown RBP8.27□□□□□ -1.09
VPS53-204ENST00000437048 CCDC40Q4G0X9 1142 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 CFAP58Q5T655 872 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 HDXQ7Z353 690 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 GOLGA1Q92805 767 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 MYCBPQ99417 103 aaPredicted RBP8.27□□□□□ -1.09
VPS53-204ENST00000437048 CYLC1P35663 651 aaPredicted RBP8.27□□□□□ -1.09
VPS53-204ENST00000437048 LNPKQ9C0E8 428 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 APAF1O14727 1248 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 SPECC1Q5M775 1068 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 CCDC121Q6ZUS5 278 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 MROH2BQ7Z745 1585 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 ATP8B1O43520 1251 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 PPFIA1Q13136 1202 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 HSP90AA5PQ58FG0 334 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 OTUD6BQ8N6M0 293 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 NGDNQ8NEJ9 315 aaKnown RBP8.27□□□□□ -1.09
VPS53-204ENST00000437048 SLC8A1P32418 973 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 INTS4Q96HW7 963 aaKnown RBP8.27□□□□□ -1.09
VPS53-204ENST00000437048 LARSQ9P2J5 1176 aaKnown RBP8.27□□□□□ -1.09
VPS53-204ENST00000437048 IKBKGQ9Y6K9 419 aa8.27□□□□□ -1.09
VPS53-204ENST00000437048 KCNG4Q8TDN1 519 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 CTAGE9A4FU28 777 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 KRT18P05783 430 aaKnown RBP8.26□□□□□ -1.09
VPS53-204ENST00000437048 SETDB1Q15047 1291 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 TRIM7Q9C029 511 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 GBP1P32455 592 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 TRIM14Q14142 442 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 GABPB2Q8TAK5 448 aaPredicted RBP8.26□□□□□ -1.09
VPS53-204ENST00000437048 LRSAM1Q6UWE0 723 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 KRT86O43790 486 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 VAV2P52735 878 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 163.1 ms