RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 RC3H1Q5TC82 1133 aaKnown RBP15.83■□□□□ 0.12
LINC00339-204ENST00000434233 LRRC4BQ9NT99 713 aa15.83■□□□□ 0.12
LINC00339-204ENST00000434233 ERBB4Q15303 1308 aa15.83■□□□□ 0.12
LINC00339-204ENST00000434233 C5P01031 1676 aa15.83■□□□□ 0.12
LINC00339-204ENST00000434233 CACNA1FO60840 1977 aa15.82■□□□□ 0.12
LINC00339-204ENST00000434233 CENPBP07199 599 aaPredicted RBP15.82■□□□□ 0.12
LINC00339-204ENST00000434233 RARSP54136 660 aaKnown RBP15.82■□□□□ 0.12
LINC00339-204ENST00000434233 EZH2Q15910 746 aaKnown RBP15.82■□□□□ 0.12
LINC00339-204ENST00000434233 DBF4Q9UBU7 674 aaPredicted RBP15.82■□□□□ 0.12
LINC00339-204ENST00000434233 TJP1Q07157 1748 aa15.82■□□□□ 0.12
LINC00339-204ENST00000434233 LAMB4A4D0S4 1761 aa15.81■□□□□ 0.12
LINC00339-204ENST00000434233 A1BGP04217 495 aa15.81■□□□□ 0.12
LINC00339-204ENST00000434233 BRPF1P55201 1214 aaPredicted RBP15.81■□□□□ 0.12
LINC00339-204ENST00000434233 KCNQ4P56696 695 aa15.81■□□□□ 0.12
LINC00339-204ENST00000434233 TAF1LQ8IZX4 1826 aa15.81■□□□□ 0.12
LINC00339-204ENST00000434233 LINC00116Q8NCU8 138 aa15.81■□□□□ 0.12
LINC00339-204ENST00000434233 NECTIN2Q92692 538 aa15.81■□□□□ 0.12
LINC00339-204ENST00000434233 STK31Q9BXU1 1019 aa15.81■□□□□ 0.12
LINC00339-204ENST00000434233 DDX21Q9NR30 783 aaKnown RBP eCLIP15.81■□□□□ 0.12
LINC00339-204ENST00000434233 RCAN3Q9UKA8 241 aa15.81■□□□□ 0.12
LINC00339-204ENST00000434233 CNTNAP4Q9C0A0 1308 aa15.8■□□□□ 0.12
LINC00339-204ENST00000434233 PDIA6Q15084 440 aa15.8■□□□□ 0.12
LINC00339-204ENST00000434233 INTS5Q6P9B9 1019 aaKnown RBP15.8■□□□□ 0.12
LINC00339-204ENST00000434233 DEFB132Q7Z7B7 95 aa15.8■□□□□ 0.12
LINC00339-204ENST00000434233 SSH1Q8WYL5 1049 aa15.8■□□□□ 0.12
LINC00339-204ENST00000434233 CCDC87Q9NVE4 849 aa15.8■□□□□ 0.12
LINC00339-204ENST00000434233 SLC4A2P04920 1241 aa15.79■□□□□ 0.12
LINC00339-204ENST00000434233 CRKLP46109 303 aaKnown RBP15.79■□□□□ 0.12
LINC00339-204ENST00000434233 MRPL50Q8N5N7 158 aaKnown RBP15.79■□□□□ 0.12
LINC00339-204ENST00000434233 HYPKQ9NX55 129 aa15.79■□□□□ 0.12
LINC00339-204ENST00000434233 CHPF2Q9P2E5 772 aa15.79■□□□□ 0.12
LINC00339-204ENST00000434233 COL5A3P25940 1745 aaPredicted RBP15.79■□□□□ 0.12
LINC00339-204ENST00000434233 NBPF26B4DH59 902 aa15.78■□□□□ 0.12
LINC00339-204ENST00000434233 TCERG1O14776 1098 aaKnown RBP15.78■□□□□ 0.12
LINC00339-204ENST00000434233 IL6STP40189 918 aaPredicted RBP15.78■□□□□ 0.12
LINC00339-204ENST00000434233 NBPF14Q5TI25 921 aa15.78■□□□□ 0.12
LINC00339-204ENST00000434233 NBPF10Q6P3W6 841 aaKnown RBP15.78■□□□□ 0.12
LINC00339-204ENST00000434233 NBPF15Q8N660 670 aa15.78■□□□□ 0.12
LINC00339-204ENST00000434233 MYH14Q7Z406 1995 aaKnown RBP15.78■□□□□ 0.12
LINC00339-204ENST00000434233 RPS6KA4O75676 772 aa15.77■□□□□ 0.12
LINC00339-204ENST00000434233 CANXP27824 592 aaKnown RBP15.77■□□□□ 0.12
LINC00339-204ENST00000434233 SMC4Q9NTJ3 1288 aa15.77■□□□□ 0.12
LINC00339-204ENST00000434233 ZBTB1Q9Y2K1 713 aa15.77■□□□□ 0.12
LINC00339-204ENST00000434233 BCAR3O75815 825 aa15.76■□□□□ 0.11
LINC00339-204ENST00000434233 EIF5P55010 431 aaKnown RBP15.76■□□□□ 0.11
LINC00339-204ENST00000434233 PROSER3Q2NL68 480 aa15.76■□□□□ 0.11
LINC00339-204ENST00000434233 LRP10Q7Z4F1 713 aa15.76■□□□□ 0.11
LINC00339-204ENST00000434233 C4BP0C0L5 1744 aa15.75■□□□□ 0.11
LINC00339-204ENST00000434233 ANXA1P04083 346 aa15.75■□□□□ 0.11
LINC00339-204ENST00000434233 MYL6BP14649 208 aa15.75■□□□□ 0.11
LINC00339-204ENST00000434233 AKT1S1Q96B36 256 aa15.75■□□□□ 0.11
LINC00339-204ENST00000434233 RREB1Q92766 1687 aa15.75■□□□□ 0.11
LINC00339-204ENST00000434233 EP400Q96L91 3159 aa15.74■□□□□ 0.11
LINC00339-204ENST00000434233 PIP4K2AP48426 406 aaPredicted RBP15.74■□□□□ 0.11
LINC00339-204ENST00000434233 G2E3Q7L622 706 aa15.74■□□□□ 0.11
LINC00339-204ENST00000434233 NPM2Q86SE8 214 aaKnown RBP15.74■□□□□ 0.11
LINC00339-204ENST00000434233 ARHGAP45Q92619 1136 aa15.74■□□□□ 0.11
LINC00339-204ENST00000434233 AK7Q96M32 723 aa15.74■□□□□ 0.11
LINC00339-204ENST00000434233 BCL2L13Q9BXK5 485 aa15.74■□□□□ 0.11
LINC00339-204ENST00000434233 PHAXQ9H814 394 aaKnown RBP15.74■□□□□ 0.11
LINC00339-204ENST00000434233 RTCBQ9Y3I0 505 aaKnown RBP15.74■□□□□ 0.11
LINC00339-204ENST00000434233 A0A087WZG4 1122 aa15.73■□□□□ 0.11
LINC00339-204ENST00000434233 IPO8O15397 1037 aaKnown RBP15.73■□□□□ 0.11
LINC00339-204ENST00000434233 FLIIQ13045 1269 aa15.73■□□□□ 0.11
LINC00339-204ENST00000434233 COPS6Q7L5N1 327 aa15.73■□□□□ 0.11
LINC00339-204ENST00000434233 NOB1Q9ULX3 412 aaKnown RBP15.73■□□□□ 0.11
LINC00339-204ENST00000434233 PTPRCP08575 1304 aa15.72■□□□□ 0.11
LINC00339-204ENST00000434233 KIF16BQ96L93 1317 aa15.72■□□□□ 0.11
LINC00339-204ENST00000434233 GNPATO15228 680 aa15.72■□□□□ 0.11
LINC00339-204ENST00000434233 TRAPPC3LQ5T215 181 aa15.72■□□□□ 0.11
LINC00339-204ENST00000434233 XAGE3Q8WTP9 111 aa15.72■□□□□ 0.11
LINC00339-204ENST00000434233 STK32BQ9NY57 414 aa15.72■□□□□ 0.11
LINC00339-204ENST00000434233 DDX58O95786 925 aaKnown RBP15.71■□□□□ 0.11
LINC00339-204ENST00000434233 SSFA2P28290 1259 aa15.71■□□□□ 0.11
LINC00339-204ENST00000434233 AIMP1Q12904 312 aaKnown RBP15.71■□□□□ 0.11
LINC00339-204ENST00000434233 SLC15A2Q16348 729 aa15.71■□□□□ 0.11
LINC00339-204ENST00000434233 ANKRD13DQ6ZTN6 518 aa15.71■□□□□ 0.11
LINC00339-204ENST00000434233 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.71■□□□□ 0.11
LINC00339-204ENST00000434233 FLAD1Q8NFF5 587 aa15.71■□□□□ 0.11
LINC00339-204ENST00000434233 ZNF827Q17R98 1081 aa15.7■□□□□ 0.1
LINC00339-204ENST00000434233 ZKSCAN2Q63HK3 967 aa15.7■□□□□ 0.1
LINC00339-204ENST00000434233 KSR2Q6VAB6 950 aa15.7■□□□□ 0.1
LINC00339-204ENST00000434233 TFCP2L1Q9NZI6 479 aa15.7■□□□□ 0.1
LINC00339-204ENST00000434233 ZNF330Q9Y3S2 320 aaPredicted RBP15.7■□□□□ 0.1
LINC00339-204ENST00000434233 NUP188Q5SRE5 1749 aa15.7■□□□□ 0.1
LINC00339-204ENST00000434233 UBR3Q6ZT12 1888 aa15.69■□□□□ 0.1
LINC00339-204ENST00000434233 ERVV-1B6SEH8 477 aa15.69■□□□□ 0.1
LINC00339-204ENST00000434233 FKBP5Q13451 457 aaPredicted RBP15.69■□□□□ 0.1
LINC00339-204ENST00000434233 TTLL7Q6ZT98 887 aa15.69■□□□□ 0.1
LINC00339-204ENST00000434233 DZIP3Q86Y13 1208 aaKnown RBP15.69■□□□□ 0.1
LINC00339-204ENST00000434233 PLBD2Q8NHP8 589 aa15.69■□□□□ 0.1
LINC00339-204ENST00000434233 FRAT1Q92837 279 aaPredicted RBP15.69■□□□□ 0.1
LINC00339-204ENST00000434233 ARHGEF1Q92888 912 aaKnown RBP15.69■□□□□ 0.1
LINC00339-204ENST00000434233 API5Q9BZZ5 524 aaKnown RBP15.69■□□□□ 0.1
LINC00339-204ENST00000434233 SUPT16HQ9Y5B9 1047 aaKnown RBP15.69■□□□□ 0.1
LINC00339-204ENST00000434233 RNF123Q5XPI4 1314 aa15.68■□□□□ 0.1
LINC00339-204ENST00000434233 COL15A1P39059 1388 aa15.68■□□□□ 0.1
LINC00339-204ENST00000434233 RGL2O15211 777 aa15.68■□□□□ 0.1
LINC00339-204ENST00000434233 MS4A1P11836 297 aa15.68■□□□□ 0.1
LINC00339-204ENST00000434233 ATF7IPQ6VMQ6 1270 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms