RNA–Protein interactions for RNA: ENST00000428828.1

CECR3-201, Transcript of cat eye syndrome chromosome region, candidate 3, humanhuman

TSL 1 (best) BASIC

Gene CECR3, Length 1,915 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CECR3-201ENST00000428828 ZNF790Q6PG37 636 aa14.35□□□□□ -0.11
CECR3-201ENST00000428828 TRMT2AQ8IZ69 625 aaKnown RBP14.35□□□□□ -0.11
CECR3-201ENST00000428828 ASAP1Q9ULH1 1129 aa14.35□□□□□ -0.11
CECR3-201ENST00000428828 KCPQ6ZWJ8 1503 aa14.34□□□□□ -0.11
CECR3-201ENST00000428828 RCAN3Q9UKA8 241 aa14.34□□□□□ -0.11
CECR3-201ENST00000428828 TRIM37O94972 964 aa14.33□□□□□ -0.11
CECR3-201ENST00000428828 FAM161AQ3B820 660 aa14.33□□□□□ -0.11
CECR3-201ENST00000428828 LY75O60449 1722 aa14.33□□□□□ -0.12
CECR3-201ENST00000428828 PTCD1O75127 700 aaKnown RBP14.33□□□□□ -0.12
CECR3-201ENST00000428828 TSPYL6Q8N831 410 aa14.33□□□□□ -0.12
CECR3-201ENST00000428828 C8orf58Q8NAV2 365 aa14.33□□□□□ -0.12
CECR3-201ENST00000428828 BABAM1Q9NWV8 329 aa14.33□□□□□ -0.12
CECR3-201ENST00000428828 EIF4A1P60842 406 aaKnown RBP14.32□□□□□ -0.12
CECR3-201ENST00000428828 RBM42Q9BTD8 480 aaKnown RBP14.32□□□□□ -0.12
CECR3-201ENST00000428828 ATG3Q9NT62 314 aa14.32□□□□□ -0.12
CECR3-201ENST00000428828 TJP1Q07157 1748 aa14.32□□□□□ -0.12
CECR3-201ENST00000428828 FSD2A1L4K1 749 aa14.31□□□□□ -0.12
CECR3-201ENST00000428828 ZNF496Q96IT1 587 aaPredicted RBP14.31□□□□□ -0.12
CECR3-201ENST00000428828 TWISTNBQ3B726 338 aaPredicted RBP14.31□□□□□ -0.12
CECR3-201ENST00000428828 PALLDQ8WX93 1383 aa14.3□□□□□ -0.12
CECR3-201ENST00000428828 PRAMEF22A3QJZ6 481 aa14.3□□□□□ -0.12
CECR3-201ENST00000428828 NECTIN2Q92692 538 aa14.3□□□□□ -0.12
CECR3-201ENST00000428828 FMNL2Q96PY5 1086 aa14.3□□□□□ -0.12
CECR3-201ENST00000428828 ISY1Q9ULR0 285 aaKnown RBP14.3□□□□□ -0.12
CECR3-201ENST00000428828 TAF1LQ8IZX4 1826 aa14.3□□□□□ -0.12
CECR3-201ENST00000428828 AAMPQ13685 434 aa14.29□□□□□ -0.12
CECR3-201ENST00000428828 BCL11BQ9C0K0 894 aaPredicted RBP14.29□□□□□ -0.12
CECR3-201ENST00000428828 KDM2BQ8NHM5 1336 aa14.29□□□□□ -0.12
CECR3-201ENST00000428828 CACNA1FO60840 1977 aa14.29□□□□□ -0.12
CECR3-201ENST00000428828 COL5A3P25940 1745 aaPredicted RBP14.29□□□□□ -0.12
CECR3-201ENST00000428828 PRDM4Q9UKN5 801 aa14.28□□□□□ -0.12
CECR3-201ENST00000428828 HEG1Q9ULI3 1381 aa14.28□□□□□ -0.12
CECR3-201ENST00000428828 EIF2S2P20042 333 aaKnown RBP14.27□□□□□ -0.12
CECR3-201ENST00000428828 CENPQQ7L2Z9 268 aaPredicted RBP14.27□□□□□ -0.12
CECR3-201ENST00000428828 BCL2L13Q9BXK5 485 aa14.27□□□□□ -0.12
CECR3-201ENST00000428828 GIGYF1O75420 1035 aaPredicted RBP14.27□□□□□ -0.13
CECR3-201ENST00000428828 FGD1P98174 961 aa14.27□□□□□ -0.13
CECR3-201ENST00000428828 RBM10P98175 930 aaKnown RBP14.27□□□□□ -0.13
CECR3-201ENST00000428828 C8orf34Q49A92 452 aa14.27□□□□□ -0.13
CECR3-201ENST00000428828 SMARCC1Q92922 1105 aaPredicted RBP14.27□□□□□ -0.13
CECR3-201ENST00000428828 VAMP4O75379 141 aa14.26□□□□□ -0.13
CECR3-201ENST00000428828 KCNQ4P56696 695 aa14.26□□□□□ -0.13
CECR3-201ENST00000428828 ZNF831Q5JPB2 1677 aa14.26□□□□□ -0.13
CECR3-201ENST00000428828 CICQ96RK0 1608 aaPredicted RBP14.25□□□□□ -0.13
CECR3-201ENST00000428828 SNRPA1P09661 255 aaKnown RBP14.25□□□□□ -0.13
CECR3-201ENST00000428828 SLC4A3P48751 1232 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 TERF1P54274 439 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 HDGFL1Q5TGJ6 251 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 SLC4A9Q96Q91 983 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 MAP7D2Q96T17 732 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 MYH14Q7Z406 1995 aaKnown RBP14.25□□□□□ -0.13
CECR3-201ENST00000428828 LOC102724428A0A0B4J2F2 783 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 GOLGA6L3A6NEY3 463 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 APBA3O96018 575 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 ATP6V1AP38606 617 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 SIK1P57059 783 aa14.25□□□□□ -0.13
CECR3-201ENST00000428828 RGPD3A6NKT7 1758 aaPredicted RBP14.24□□□□□ -0.13
CECR3-201ENST00000428828 RGPD4Q7Z3J3 1758 aa14.24□□□□□ -0.13
CECR3-201ENST00000428828 XRCC6P12956 609 aaKnown RBP eCLIP14.24□□□□□ -0.13
CECR3-201ENST00000428828 DNAJC10Q8IXB1 793 aa14.24□□□□□ -0.13
CECR3-201ENST00000428828 USP16Q9Y5T5 823 aa14.24□□□□□ -0.13
CECR3-201ENST00000428828 PIP4K2AP48426 406 aaPredicted RBP14.23□□□□□ -0.13
CECR3-201ENST00000428828 SMC4Q9NTJ3 1288 aa14.23□□□□□ -0.13
CECR3-201ENST00000428828 BCAR3O75815 825 aa14.23□□□□□ -0.13
CECR3-201ENST00000428828 CT47B1P0C2W7 299 aaPredicted RBP14.23□□□□□ -0.13
CECR3-201ENST00000428828 RARSP54136 660 aaKnown RBP14.23□□□□□ -0.13
CECR3-201ENST00000428828 SSH1Q8WYL5 1049 aa14.23□□□□□ -0.13
CECR3-201ENST00000428828 CCNL1Q9UK58 526 aaPredicted RBP14.23□□□□□ -0.13
CECR3-201ENST00000428828 ANXA1P04083 346 aa14.22□□□□□ -0.13
CECR3-201ENST00000428828 HOXB7P09629 217 aa14.22□□□□□ -0.13
CECR3-201ENST00000428828 CHPF2Q9P2E5 772 aa14.22□□□□□ -0.13
CECR3-201ENST00000428828 MRE11P49959 708 aa14.21□□□□□ -0.13
CECR3-201ENST00000428828 ITPK1Q13572 414 aa14.21□□□□□ -0.13
CECR3-201ENST00000428828 BECN1Q14457 450 aa14.21□□□□□ -0.13
CECR3-201ENST00000428828 CCDC30Q5VVM6 783 aa14.21□□□□□ -0.13
CECR3-201ENST00000428828 STK31Q9BXU1 1019 aa14.21□□□□□ -0.13
CECR3-201ENST00000428828 C4BP0C0L5 1744 aa14.21□□□□□ -0.13
CECR3-201ENST00000428828 SF3B2Q13435 895 aaKnown RBP14.21□□□□□ -0.14
CECR3-201ENST00000428828 SOS1Q07889 1333 aaPredicted RBP14.21□□□□□ -0.14
CECR3-201ENST00000428828 RREB1Q92766 1687 aa14.2□□□□□ -0.14
CECR3-201ENST00000428828 MYL6BP14649 208 aa14.2□□□□□ -0.14
CECR3-201ENST00000428828 ZNF330Q9Y3S2 320 aaPredicted RBP14.2□□□□□ -0.14
CECR3-201ENST00000428828 ESPNB1AK53 854 aa14.19□□□□□ -0.14
CECR3-201ENST00000428828 A1BGP04217 495 aa14.19□□□□□ -0.14
CECR3-201ENST00000428828 SLC4A2P04920 1241 aa14.19□□□□□ -0.14
CECR3-201ENST00000428828 PROSER3Q2NL68 480 aa14.19□□□□□ -0.14
CECR3-201ENST00000428828 TUBGCP6Q96RT7 1819 aa14.19□□□□□ -0.14
CECR3-201ENST00000428828 STARD3NLO95772 234 aa14.19□□□□□ -0.14
CECR3-201ENST00000428828 CANXP27824 592 aaKnown RBP14.19□□□□□ -0.14
CECR3-201ENST00000428828 ALDH1L2Q3SY69 923 aa14.19□□□□□ -0.14
CECR3-201ENST00000428828 LINC00116Q8NCU8 138 aa14.19□□□□□ -0.14
CECR3-201ENST00000428828 TEX13AQ9BXU3 409 aaPredicted RBP14.19□□□□□ -0.14
CECR3-201ENST00000428828 NUP188Q5SRE5 1749 aa14.18□□□□□ -0.14
CECR3-201ENST00000428828 CYP19A1P11511 503 aaPredicted RBP14.18□□□□□ -0.14
CECR3-201ENST00000428828 EN1Q05925 392 aaPredicted RBP14.18□□□□□ -0.14
CECR3-201ENST00000428828 TXNRD1Q16881 649 aa14.18□□□□□ -0.14
CECR3-201ENST00000428828 MRPL50Q8N5N7 158 aaKnown RBP14.18□□□□□ -0.14
CECR3-201ENST00000428828 ZNF428Q96B54 188 aa14.18□□□□□ -0.14
CECR3-201ENST00000428828 LRRC4BQ9NT99 713 aa14.18□□□□□ -0.14
CECR3-201ENST00000428828 UBR3Q6ZT12 1888 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms