RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 NLGN1Q8N2Q7 840 aa11.83□□□□□ -0.52
HDAC1-202ENST00000428704 LINC00116Q8NCU8 138 aa11.83□□□□□ -0.52
HDAC1-202ENST00000428704 RAPGEF4Q8WZA2 1011 aa11.83□□□□□ -0.52
HDAC1-202ENST00000428704 KIAA1551Q9HCM1 1747 aa11.83□□□□□ -0.52
HDAC1-202ENST00000428704 CCER2I3L3R5 266 aa11.82□□□□□ -0.52
HDAC1-202ENST00000428704 KCNA3P22001 575 aa11.82□□□□□ -0.52
HDAC1-202ENST00000428704 CARD14Q9BXL6 1004 aa11.82□□□□□ -0.52
HDAC1-202ENST00000428704 PARP3Q9Y6F1 533 aa11.82□□□□□ -0.52
HDAC1-202ENST00000428704 CGNL1Q0VF96 1302 aa11.82□□□□□ -0.52
HDAC1-202ENST00000428704 CNTNAP1P78357 1384 aa11.81□□□□□ -0.52
HDAC1-202ENST00000428704 LOC102724428A0A0B4J2F2 783 aa11.81□□□□□ -0.52
HDAC1-202ENST00000428704 FYB1O15117 783 aa11.81□□□□□ -0.52
HDAC1-202ENST00000428704 RGL2O15211 777 aa11.81□□□□□ -0.52
HDAC1-202ENST00000428704 RGS19P49795 217 aa11.81□□□□□ -0.52
HDAC1-202ENST00000428704 SIK1P57059 783 aa11.81□□□□□ -0.52
HDAC1-202ENST00000428704 ZNF467Q7Z7K2 595 aaPredicted RBP11.81□□□□□ -0.52
HDAC1-202ENST00000428704 PCDH11XQ9BZA7 1347 aa11.81□□□□□ -0.52
HDAC1-202ENST00000428704 PCDH11YQ9BZA8 1340 aa11.81□□□□□ -0.52
HDAC1-202ENST00000428704 GABBR2O75899 941 aa11.8□□□□□ -0.52
HDAC1-202ENST00000428704 TATP17735 454 aaPredicted RBP11.8□□□□□ -0.52
HDAC1-202ENST00000428704 FBLN1P23142 703 aa11.8□□□□□ -0.52
HDAC1-202ENST00000428704 RASSF7Q02833 373 aa11.8□□□□□ -0.52
HDAC1-202ENST00000428704 RNF25Q96BH1 459 aaPredicted RBP11.8□□□□□ -0.52
HDAC1-202ENST00000428704 MS4A3Q96HJ5 214 aa11.8□□□□□ -0.52
HDAC1-202ENST00000428704 TAF1LQ8IZX4 1826 aa11.8□□□□□ -0.52
HDAC1-202ENST00000428704 KIF13BQ9NQT8 1826 aa11.8□□□□□ -0.52
HDAC1-202ENST00000428704 UBR3Q6ZT12 1888 aa11.8□□□□□ -0.52
HDAC1-202ENST00000428704 MAP3K19Q56UN5 1328 aa11.8□□□□□ -0.52
HDAC1-202ENST00000428704 HOXC9P31274 260 aa11.79□□□□□ -0.52
HDAC1-202ENST00000428704 AMPHP49418 695 aa11.79□□□□□ -0.52
HDAC1-202ENST00000428704 TRAPPC3LQ5T215 181 aa11.79□□□□□ -0.52
HDAC1-202ENST00000428704 IFNL1Q8IU54 200 aa11.79□□□□□ -0.52
HDAC1-202ENST00000428704 USHBP1Q8N6Y0 703 aa11.79□□□□□ -0.52
HDAC1-202ENST00000428704 PIGBQ92521 554 aa11.79□□□□□ -0.52
HDAC1-202ENST00000428704 COG3Q96JB2 828 aa11.79□□□□□ -0.52
HDAC1-202ENST00000428704 GGNBP2Q9H3C7 697 aa11.79□□□□□ -0.52
HDAC1-202ENST00000428704 WBP1LQ9NX94 342 aa11.79□□□□□ -0.52
HDAC1-202ENST00000428704 RTCBQ9Y3I0 505 aaKnown RBP11.79□□□□□ -0.52
HDAC1-202ENST00000428704 HSPA8P11142 646 aaKnown RBP11.78□□□□□ -0.52
HDAC1-202ENST00000428704 LMNB1P20700 586 aa11.78□□□□□ -0.52
HDAC1-202ENST00000428704 ATP6V1AP38606 617 aa11.78□□□□□ -0.52
HDAC1-202ENST00000428704 CFAP44Q96MT7 982 aa11.78□□□□□ -0.52
HDAC1-202ENST00000428704 RTL1A6NKG5 1358 aa11.78□□□□□ -0.52
HDAC1-202ENST00000428704 MAP2P11137 1827 aaKnown RBP11.77□□□□□ -0.52
HDAC1-202ENST00000428704 RIOK3O14730 519 aaKnown RBP11.77□□□□□ -0.53
HDAC1-202ENST00000428704 ANP32CO43423 234 aa11.77□□□□□ -0.53
HDAC1-202ENST00000428704 GALR2O43603 387 aaPredicted RBP11.77□□□□□ -0.53
HDAC1-202ENST00000428704 GYS1P13807 737 aa11.77□□□□□ -0.53
HDAC1-202ENST00000428704 VEGFBP49765 207 aa11.77□□□□□ -0.53
HDAC1-202ENST00000428704 ITPK1Q13572 414 aa11.77□□□□□ -0.53
HDAC1-202ENST00000428704 NBPF6Q5VWK0 638 aa11.77□□□□□ -0.53
HDAC1-202ENST00000428704 NBPF4Q96M43 638 aa11.77□□□□□ -0.53
HDAC1-202ENST00000428704 PCDHB8Q9UN66 801 aa11.77□□□□□ -0.53
HDAC1-202ENST00000428704 WASHC2AQ641Q2 1341 aa11.77□□□□□ -0.53
HDAC1-202ENST00000428704 CHRNA5P30532 468 aa11.76□□□□□ -0.53
HDAC1-202ENST00000428704 C4AP0C0L4 1744 aa11.75□□□□□ -0.53
HDAC1-202ENST00000428704 POTECB2RU33 542 aa11.75□□□□□ -0.53
HDAC1-202ENST00000428704 CYP27B1O15528 508 aa11.75□□□□□ -0.53
HDAC1-202ENST00000428704 RFC4P35249 363 aa11.75□□□□□ -0.53
HDAC1-202ENST00000428704 RRS1Q15050 365 aaKnown RBP11.75□□□□□ -0.53
HDAC1-202ENST00000428704 DPY19L2Q6NUT2 758 aa11.75□□□□□ -0.53
HDAC1-202ENST00000428704 ARHGEF1Q92888 912 aaKnown RBP11.75□□□□□ -0.53
HDAC1-202ENST00000428704 KDM6AO15550 1401 aaPredicted RBP11.75□□□□□ -0.53
HDAC1-202ENST00000428704 ARFGEF1Q9Y6D6 1849 aa11.74□□□□□ -0.53
HDAC1-202ENST00000428704 POLR3GLQ9BT43 218 aa11.74□□□□□ -0.53
HDAC1-202ENST00000428704 SMG6Q86US8 1419 aaKnown RBP11.74□□□□□ -0.53
HDAC1-202ENST00000428704 BRCA1P38398 1863 aaKnown RBP11.73□□□□□ -0.53
HDAC1-202ENST00000428704 MAP2K1Q02750 393 aaPredicted RBP11.73□□□□□ -0.53
HDAC1-202ENST00000428704 TMOD3Q9NYL9 352 aa11.73□□□□□ -0.53
HDAC1-202ENST00000428704 TAOK2Q9UL54 1235 aa11.73□□□□□ -0.53
HDAC1-202ENST00000428704 ASAP1Q9ULH1 1129 aa11.73□□□□□ -0.53
HDAC1-202ENST00000428704 INSRP06213 1382 aa11.72□□□□□ -0.53
HDAC1-202ENST00000428704 FLT4P35916 1363 aa11.72□□□□□ -0.53
HDAC1-202ENST00000428704 KIF24Q5T7B8 1368 aa11.72□□□□□ -0.53
HDAC1-202ENST00000428704 KIF7Q2M1P5 1343 aa11.72□□□□□ -0.53
HDAC1-202ENST00000428704 TMEM88BA6NKF7 163 aa11.72□□□□□ -0.53
HDAC1-202ENST00000428704 POTEIP0CG38 1075 aa11.72□□□□□ -0.53
HDAC1-202ENST00000428704 POTEJP0CG39 1038 aa11.72□□□□□ -0.53
HDAC1-202ENST00000428704 YTHDC1Q96MU7 727 aaKnown RBP11.72□□□□□ -0.53
HDAC1-202ENST00000428704 NCAPD2Q15021 1401 aa11.71□□□□□ -0.53
HDAC1-202ENST00000428704 PANK3Q9H999 370 aa11.71□□□□□ -0.53
HDAC1-202ENST00000428704 EMILIN1Q9Y6C2 1016 aa11.71□□□□□ -0.53
HDAC1-202ENST00000428704 PASKQ96RG2 1323 aa11.7□□□□□ -0.54
HDAC1-202ENST00000428704 HSP90AB2PQ58FF8 381 aa11.7□□□□□ -0.54
HDAC1-202ENST00000428704 RPS6KA4O75676 772 aa11.69□□□□□ -0.54
HDAC1-202ENST00000428704 DDR1Q08345 913 aa11.69□□□□□ -0.54
HDAC1-202ENST00000428704 PDAP1Q13442 181 aaKnown RBP11.69□□□□□ -0.54
HDAC1-202ENST00000428704 RC3H1Q5TC82 1133 aaKnown RBP11.69□□□□□ -0.54
HDAC1-202ENST00000428704 BEGAINQ9BUH8 593 aa11.69□□□□□ -0.54
HDAC1-202ENST00000428704 NFKBIEO00221 500 aa11.68□□□□□ -0.54
HDAC1-202ENST00000428704 NKX1-1Q15270 411 aaPredicted RBP11.68□□□□□ -0.54
HDAC1-202ENST00000428704 DEFB115Q30KQ5 88 aa11.68□□□□□ -0.54
HDAC1-202ENST00000428704 LDHDQ86WU2 507 aa11.68□□□□□ -0.54
HDAC1-202ENST00000428704 ATG3Q9NT62 314 aa11.68□□□□□ -0.54
HDAC1-202ENST00000428704 TRPC6Q9Y210 931 aa11.68□□□□□ -0.54
HDAC1-202ENST00000428704 GTF3C3Q9Y5Q9 886 aa11.68□□□□□ -0.54
HDAC1-202ENST00000428704 CNTNAP4Q9C0A0 1308 aa11.67□□□□□ -0.54
HDAC1-202ENST00000428704 WDR33Q9C0J8 1336 aaKnown RBP11.67□□□□□ -0.54
HDAC1-202ENST00000428704 PSEN1P49768 467 aa11.67□□□□□ -0.54
HDAC1-202ENST00000428704 ERFEQ4G0M1 354 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms