RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 GUCY1B3Q02153 619 aa10.42□□□□□ -0.74
USP40-203ENST00000427112 NEXMIFQ5QGS0 1516 aa10.42□□□□□ -0.74
USP40-203ENST00000427112 ROBO2Q9HCK4 1378 aa10.42□□□□□ -0.74
USP40-203ENST00000427112 CCDC30Q5VVM6 783 aa10.42□□□□□ -0.74
USP40-203ENST00000427112 FGD1P98174 961 aa10.42□□□□□ -0.74
USP40-203ENST00000427112 AACSQ86V21 672 aa10.42□□□□□ -0.74
USP40-203ENST00000427112 RHPN1Q8TCX5 695 aa10.42□□□□□ -0.74
USP40-203ENST00000427112 MYO3AQ8NEV4 1616 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 ZC3H13Q5T200 1668 aaKnown RBP10.41□□□□□ -0.74
USP40-203ENST00000427112 RRP9O43818 475 aaKnown RBP10.41□□□□□ -0.74
USP40-203ENST00000427112 OFD1O75665 1012 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 SYT1P21579 422 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 GJB2P29033 226 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 CCT4P50991 539 aaKnown RBP10.41□□□□□ -0.74
USP40-203ENST00000427112 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.41□□□□□ -0.74
USP40-203ENST00000427112 TLR7Q9NYK1 1049 aaKnown RBP10.41□□□□□ -0.74
USP40-203ENST00000427112 UHRF1BP1LA0JNW5 1464 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 SRCAPQ6ZRS2 3230 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 VWDEQ8N2E2 1590 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 PTCH1Q13635 1447 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 GNAT3A8MTJ3 354 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 TEFQ10587 303 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 CHST3Q7LGC8 479 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 ARHGEF28Q8N1W1 1705 aaKnown RBP10.41□□□□□ -0.74
USP40-203ENST00000427112 A0A0G2JS52 829 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 CYP2E1P05181 493 aaPredicted RBP10.41□□□□□ -0.74
USP40-203ENST00000427112 PPP1R9BQ96SB3 815 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 PPLO60437 1756 aa10.41□□□□□ -0.74
USP40-203ENST00000427112 ZNF445P59923 1031 aa10.4□□□□□ -0.74
USP40-203ENST00000427112 ATP8B2P98198 1209 aa10.4□□□□□ -0.74
USP40-203ENST00000427112 AEBP2Q6ZN18 517 aaPredicted RBP10.4□□□□□ -0.74
USP40-203ENST00000427112 CCDC129Q6ZRS4 1044 aa10.4□□□□□ -0.74
USP40-203ENST00000427112 DNAJC2Q99543 621 aaKnown RBP10.4□□□□□ -0.74
USP40-203ENST00000427112 CWC22Q9HCG8 908 aaKnown RBP10.4□□□□□ -0.74
USP40-203ENST00000427112 ZKSCAN5Q9Y2L8 839 aa10.4□□□□□ -0.74
USP40-203ENST00000427112 SNX14Q9Y5W7 946 aa10.4□□□□□ -0.74
USP40-203ENST00000427112 TSPOAP1O95153 1857 aa10.4□□□□□ -0.74
USP40-203ENST00000427112 DEPDC5O75140 1603 aa10.4□□□□□ -0.74
USP40-203ENST00000427112 IFIT2P09913 472 aaKnown RBP10.4□□□□□ -0.74
USP40-203ENST00000427112 HSP90B1P14625 803 aaKnown RBP10.4□□□□□ -0.74
USP40-203ENST00000427112 RUFY3Q7L099 469 aa10.4□□□□□ -0.74
USP40-203ENST00000427112 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.4□□□□□ -0.74
USP40-203ENST00000427112 V9GYY5 206 aaPredicted RBP10.4□□□□□ -0.74
USP40-203ENST00000427112 GOLGA6L4A6NEF3 574 aa10.4□□□□□ -0.75
USP40-203ENST00000427112 BRD1O95696 1058 aa10.4□□□□□ -0.75
USP40-203ENST00000427112 GNAI3P08754 354 aa10.4□□□□□ -0.75
USP40-203ENST00000427112 ZC3H6P61129 1189 aaKnown RBP10.4□□□□□ -0.75
USP40-203ENST00000427112 LUZP1Q86V48 1076 aa10.39□□□□□ -0.75
USP40-203ENST00000427112 KIAA2012Q0VF49 1180 aa10.39□□□□□ -0.75
USP40-203ENST00000427112 NAA30Q147X3 362 aaPredicted RBP10.39□□□□□ -0.75
USP40-203ENST00000427112 DDX17Q92841 729 aaKnown RBP10.39□□□□□ -0.75
USP40-203ENST00000427112 ADGRB2O60241 1585 aa10.39□□□□□ -0.75
USP40-203ENST00000427112 PIK3C2BO00750 1634 aa10.39□□□□□ -0.75
USP40-203ENST00000427112 ATP5J2-PTCD1G3V325 749 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 STX6O43752 255 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 PTCD1O75127 700 aaKnown RBP10.38□□□□□ -0.75
USP40-203ENST00000427112 ZNF530Q6P9A1 599 aaPredicted RBP10.38□□□□□ -0.75
USP40-203ENST00000427112 MAP3K2Q9Y2U5 619 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 TCHHQ07283 1943 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 ARHGEF40Q8TER5 1519 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 LRMPQ12912 555 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 PTPN21Q16825 1174 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 HSP90AB3PQ58FF7 597 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 ESCO1Q5FWF5 840 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 FTOQ9C0B1 505 aaKnown RBP eCLIP10.38□□□□□ -0.75
USP40-203ENST00000427112 PDRG1Q9NUG6 133 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 NOL7Q9UMY1 257 aaKnown RBP10.38□□□□□ -0.75
USP40-203ENST00000427112 CFAP74Q9C0B2 1584 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 SEC62Q99442 399 aaKnown RBP10.38□□□□□ -0.75
USP40-203ENST00000427112 ABCA9Q8IUA7 1624 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 PTPRCP08575 1304 aa10.38□□□□□ -0.75
USP40-203ENST00000427112 PLCD3Q8N3E9 789 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 FSD1Q9BTV5 496 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 NRBP1Q9UHY1 535 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 RGS12O14924 1447 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 KNDC1Q76NI1 1749 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 PIK3R4Q99570 1358 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 ALKQ9UM73 1620 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 BTBD11A6QL63 1104 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 AP5Z1O43299 807 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 NBPF6Q5VWK0 638 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 LARP1BQ659C4 914 aaKnown RBP10.37□□□□□ -0.75
USP40-203ENST00000427112 ISM2Q6H9L7 571 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 NBPF4Q96M43 638 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 FMNL2Q96PY5 1086 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 CCDC39Q9UFE4 941 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 RAB11FIP3O75154 756 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 PYCARDQ9ULZ3 195 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 ZFYVE9O95405 1425 aa10.37□□□□□ -0.75
USP40-203ENST00000427112 GOLGB1Q14789 3259 aaKnown RBP10.37□□□□□ -0.75
USP40-203ENST00000427112 RIMS1Q86UR5 1692 aaKnown RBP10.36□□□□□ -0.75
USP40-203ENST00000427112 MED14O60244 1454 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 TPM2P07951 284 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 LIG1P18858 919 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 CDC37L1Q7L3B6 337 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 BICD2Q8TD16 824 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 C16orf45Q96MC5 204 aaPredicted RBP10.36□□□□□ -0.75
USP40-203ENST00000427112 PUS7Q96PZ0 661 aaKnown RBP10.36□□□□□ -0.75
USP40-203ENST00000427112 EDC4Q6P2E9 1401 aaKnown RBP10.36□□□□□ -0.75
USP40-203ENST00000427112 KIAA1210Q9ULL0 1709 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 190.6 ms