RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 OSBPL3Q9H4L5 887 aa14.17□□□□□ -0.14
UBR4-207ENST00000425413 DDIT3P35638 169 aa14.17□□□□□ -0.14
UBR4-207ENST00000425413 SALL3Q9BXA9 1300 aa14.17□□□□□ -0.14
UBR4-207ENST00000425413 HOXB7P09629 217 aa14.16□□□□□ -0.14
UBR4-207ENST00000425413 TATP17735 454 aaPredicted RBP14.16□□□□□ -0.14
UBR4-207ENST00000425413 ESYT1Q9BSJ8 1104 aa14.16□□□□□ -0.14
UBR4-207ENST00000425413 FOXD4L5Q5VV16 416 aaPredicted RBP14.16□□□□□ -0.14
UBR4-207ENST00000425413 FOXD4L4Q8WXT5 416 aaPredicted RBP14.16□□□□□ -0.14
UBR4-207ENST00000425413 IL25Q9H293 177 aa14.16□□□□□ -0.14
UBR4-207ENST00000425413 PALD1Q9ULE6 856 aa14.16□□□□□ -0.14
UBR4-207ENST00000425413 CHMLP26374 656 aa14.15□□□□□ -0.14
UBR4-207ENST00000425413 NEK4P51957 841 aa14.15□□□□□ -0.14
UBR4-207ENST00000425413 NCOA3Q9Y6Q9 1424 aa14.15□□□□□ -0.14
UBR4-207ENST00000425413 PKP1Q13835 747 aa14.15□□□□□ -0.14
UBR4-207ENST00000425413 ZNF790Q6PG37 636 aa14.15□□□□□ -0.14
UBR4-207ENST00000425413 ZGPATQ8N5A5 531 aaKnown RBP14.15□□□□□ -0.14
UBR4-207ENST00000425413 KSR2Q6VAB6 950 aa14.14□□□□□ -0.15
UBR4-207ENST00000425413 USP54Q70EL1 1684 aa14.14□□□□□ -0.15
UBR4-207ENST00000425413 POLA2Q14181 598 aa14.14□□□□□ -0.15
UBR4-207ENST00000425413 RIC3Q7Z5B4 369 aa14.14□□□□□ -0.15
UBR4-207ENST00000425413 ZNF496Q96IT1 587 aaPredicted RBP14.14□□□□□ -0.15
UBR4-207ENST00000425413 SIL1Q9H173 461 aa14.14□□□□□ -0.15
UBR4-207ENST00000425413 ST18O60284 1047 aa14.13□□□□□ -0.15
UBR4-207ENST00000425413 RAB3GAP1Q15042 981 aa14.13□□□□□ -0.15
UBR4-207ENST00000425413 UPF3BQ9BZI7 483 aaKnown RBP14.13□□□□□ -0.15
UBR4-207ENST00000425413 NPHP3Q7Z494 1330 aa14.13□□□□□ -0.15
UBR4-207ENST00000425413 PHKG2P15735 406 aa14.13□□□□□ -0.15
UBR4-207ENST00000425413 KLHDC4Q8TBB5 520 aa14.13□□□□□ -0.15
UBR4-207ENST00000425413 KIF1BPQ96EK5 621 aa14.13□□□□□ -0.15
UBR4-207ENST00000425413 SLC52A2Q9HAB3 445 aa14.13□□□□□ -0.15
UBR4-207ENST00000425413 SLIT3O75094 1523 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 MST1RQ04912 1400 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 XAGE3Q8WTP9 111 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 CHAMP1Q96JM3 812 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 SPG7Q9UQ90 795 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 USP16Q9Y5T5 823 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 CYP27B1O15528 508 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 CADPS2Q86UW7 1296 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 SUCLG2Q96I99 432 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 GBP4Q96PP9 640 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 STAP2Q9UGK3 403 aa14.12□□□□□ -0.15
UBR4-207ENST00000425413 DDX11L8A8MPP1 907 aa14.11□□□□□ -0.15
UBR4-207ENST00000425413 COPS6Q7L5N1 327 aa14.11□□□□□ -0.15
UBR4-207ENST00000425413 CHMP4AQ9BY43 222 aa14.11□□□□□ -0.15
UBR4-207ENST00000425413 DDX21Q9NR30 783 aaKnown RBP eCLIP14.11□□□□□ -0.15
UBR4-207ENST00000425413 HYPKQ9NX55 129 aa14.11□□□□□ -0.15
UBR4-207ENST00000425413 CIZ1Q9ULV3 898 aaPredicted RBP14.11□□□□□ -0.15
UBR4-207ENST00000425413 MED1Q15648 1581 aaPredicted RBP14.11□□□□□ -0.15
UBR4-207ENST00000425413 RAB11FIP3O75154 756 aa14.11□□□□□ -0.15
UBR4-207ENST00000425413 PDIA6Q15084 440 aa14.11□□□□□ -0.15
UBR4-207ENST00000425413 TTC5Q8N0Z6 440 aa14.11□□□□□ -0.15
UBR4-207ENST00000425413 BICC1Q9H694 974 aaKnown RBP14.11□□□□□ -0.15
UBR4-207ENST00000425413 EIF5BO60841 1220 aaKnown RBP14.1□□□□□ -0.15
UBR4-207ENST00000425413 CWC27Q6UX04 472 aaKnown RBP14.1□□□□□ -0.15
UBR4-207ENST00000425413 IFNL2Q8IZJ0 200 aa14.1□□□□□ -0.15
UBR4-207ENST00000425413 PI4K2BQ8TCG2 481 aa14.1□□□□□ -0.15
UBR4-207ENST00000425413 MYD88Q99836 296 aa14.1□□□□□ -0.15
UBR4-207ENST00000425413 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.1□□□□□ -0.15
UBR4-207ENST00000425413 PXDNLA1KZ92 1463 aa14.1□□□□□ -0.15
UBR4-207ENST00000425413 MEGF6O75095 1541 aa14.1□□□□□ -0.15
UBR4-207ENST00000425413 RGPD5Q99666 1765 aa14.1□□□□□ -0.15
UBR4-207ENST00000425413 KDM6AO15550 1401 aaPredicted RBP14.1□□□□□ -0.15
UBR4-207ENST00000425413 GRM8O00222 908 aa14.1□□□□□ -0.15
UBR4-207ENST00000425413 DDX58O95786 925 aaKnown RBP14.1□□□□□ -0.15
UBR4-207ENST00000425413 LARP6Q9BRS8 491 aaKnown RBP14.1□□□□□ -0.15
UBR4-207ENST00000425413 PRDM11Q9NQV5 511 aa14.09□□□□□ -0.15
UBR4-207ENST00000425413 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.09□□□□□ -0.15
UBR4-207ENST00000425413 GOLGA6L3A6NEY3 463 aa14.09□□□□□ -0.15
UBR4-207ENST00000425413 ATP5J2-PTCD1G3V325 749 aa14.09□□□□□ -0.15
UBR4-207ENST00000425413 PTCD1O75127 700 aaKnown RBP14.09□□□□□ -0.15
UBR4-207ENST00000425413 IGKV5-2P06315 115 aa14.09□□□□□ -0.15
UBR4-207ENST00000425413 CABP4P57796 275 aa14.09□□□□□ -0.15
UBR4-207ENST00000425413 CLASRPQ8N2M8 674 aaKnown RBP14.09□□□□□ -0.15
UBR4-207ENST00000425413 LINS1Q8NG48 757 aa14.09□□□□□ -0.15
UBR4-207ENST00000425413 CCDC8Q9H0W5 538 aaPredicted RBP14.09□□□□□ -0.15
UBR4-207ENST00000425413 ANO8Q9HCE9 1232 aaPredicted RBP14.09□□□□□ -0.15
UBR4-207ENST00000425413 NCAPD2Q15021 1401 aa14.08□□□□□ -0.15
UBR4-207ENST00000425413 DTNBO60941 627 aa14.08□□□□□ -0.16
UBR4-207ENST00000425413 MCCP23508 829 aa14.08□□□□□ -0.16
UBR4-207ENST00000425413 MCTP1Q6DN14 999 aa14.08□□□□□ -0.16
UBR4-207ENST00000425413 AACSQ86V21 672 aa14.08□□□□□ -0.16
UBR4-207ENST00000425413 KAZALD1Q96I82 304 aa14.08□□□□□ -0.16
UBR4-207ENST00000425413 PANK2Q9BZ23 570 aa14.08□□□□□ -0.16
UBR4-207ENST00000425413 ALDH1L1O75891 902 aa14.08□□□□□ -0.16
UBR4-207ENST00000425413 IFIT2P09913 472 aaKnown RBP14.08□□□□□ -0.16
UBR4-207ENST00000425413 FOXD4L6Q3SYB3 417 aaPredicted RBP14.08□□□□□ -0.16
UBR4-207ENST00000425413 FOXD4L3Q6VB84 417 aaPredicted RBP14.08□□□□□ -0.16
UBR4-207ENST00000425413 TOM1L2Q6ZVM7 507 aa14.08□□□□□ -0.16
UBR4-207ENST00000425413 STRN4Q9NRL3 753 aa14.08□□□□□ -0.16
UBR4-207ENST00000425413 NCLP19338 710 aaKnown RBP14.07□□□□□ -0.16
UBR4-207ENST00000425413 CCDC9Q9Y3X0 531 aaKnown RBP14.07□□□□□ -0.16
UBR4-207ENST00000425413 TRPM3Q9HCF6 1732 aaPredicted RBP14.07□□□□□ -0.16
UBR4-207ENST00000425413 LMO7Q8WWI1 1683 aa14.07□□□□□ -0.16
UBR4-207ENST00000425413 BRINP3Q76B58 766 aa14.07□□□□□ -0.16
UBR4-207ENST00000425413 DDX54Q8TDD1 881 aaKnown RBP14.07□□□□□ -0.16
UBR4-207ENST00000425413 TMX3Q96JJ7 454 aa14.07□□□□□ -0.16
UBR4-207ENST00000425413 KDM3BQ7LBC6 1761 aa14.07□□□□□ -0.16
UBR4-207ENST00000425413 HEG1Q9ULI3 1381 aa14.07□□□□□ -0.16
UBR4-207ENST00000425413 SPATA31A3Q5VYP0 1347 aa14.07□□□□□ -0.16
UBR4-207ENST00000425413 NEXNQ0ZGT2 675 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms