RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 DCTN1Q14203 1278 aa14.43□□□□□ -0.1
USP49-204ENST00000423567 AMIGO3Q86WK7 504 aa14.43□□□□□ -0.1
USP49-204ENST00000423567 KLHL34Q8N239 644 aa14.43□□□□□ -0.1
USP49-204ENST00000423567 FMNL2Q96PY5 1086 aa14.43□□□□□ -0.1
USP49-204ENST00000423567 TEX13AQ9BXU3 409 aaPredicted RBP14.43□□□□□ -0.1
USP49-204ENST00000423567 FHDC1Q9C0D6 1143 aaPredicted RBP14.43□□□□□ -0.1
USP49-204ENST00000423567 TUBGCP6Q96RT7 1819 aa14.43□□□□□ -0.1
USP49-204ENST00000423567 STARD3NLO95772 234 aa14.42□□□□□ -0.1
USP49-204ENST00000423567 LMOD3Q0VAK6 560 aa14.42□□□□□ -0.1
USP49-204ENST00000423567 SMIM5Q71RC9 77 aa14.42□□□□□ -0.1
USP49-204ENST00000423567 ZNF496Q96IT1 587 aaPredicted RBP14.42□□□□□ -0.1
USP49-204ENST00000423567 CCDC87Q9NVE4 849 aa14.42□□□□□ -0.1
USP49-204ENST00000423567 KCPQ6ZWJ8 1503 aa14.41□□□□□ -0.1
USP49-204ENST00000423567 RIPK4P57078 832 aa14.41□□□□□ -0.1
USP49-204ENST00000423567 TAF7Q15545 349 aaPredicted RBP14.41□□□□□ -0.1
USP49-204ENST00000423567 PNISRQ8TF01 805 aaKnown RBP14.41□□□□□ -0.1
USP49-204ENST00000423567 ARHGEF1Q92888 912 aaKnown RBP14.41□□□□□ -0.1
USP49-204ENST00000423567 SYT17Q9BSW7 474 aa14.41□□□□□ -0.1
USP49-204ENST00000423567 HEG1Q9ULI3 1381 aa14.41□□□□□ -0.1
USP49-204ENST00000423567 CYP19A1P11511 503 aaPredicted RBP14.4□□□□□ -0.1
USP49-204ENST00000423567 CCDC146Q8IYE0 955 aa14.4□□□□□ -0.1
USP49-204ENST00000423567 RUNDC1Q96C34 613 aa14.4□□□□□ -0.1
USP49-204ENST00000423567 ADAMTS8Q9UP79 889 aa14.4□□□□□ -0.1
USP49-204ENST00000423567 UBR3Q6ZT12 1888 aa14.4□□□□□ -0.1
USP49-204ENST00000423567 INTS5Q6P9B9 1019 aaKnown RBP14.39□□□□□ -0.11
USP49-204ENST00000423567 NPM2Q86SE8 214 aaKnown RBP14.39□□□□□ -0.11
USP49-204ENST00000423567 NLGN1Q8N2Q7 840 aa14.39□□□□□ -0.11
USP49-204ENST00000423567 VIRMAQ69YN4 1812 aaKnown RBP14.38□□□□□ -0.11
USP49-204ENST00000423567 COL5A3P25940 1745 aaPredicted RBP14.38□□□□□ -0.11
USP49-204ENST00000423567 CICQ96RK0 1608 aaPredicted RBP14.38□□□□□ -0.11
USP49-204ENST00000423567 KCNQ3O43525 872 aa14.38□□□□□ -0.11
USP49-204ENST00000423567 ZPR1O75312 459 aa14.38□□□□□ -0.11
USP49-204ENST00000423567 TMPOP42166 694 aaKnown RBP14.38□□□□□ -0.11
USP49-204ENST00000423567 NEUROD2Q15784 382 aa14.38□□□□□ -0.11
USP49-204ENST00000423567 TJP1Q07157 1748 aa14.38□□□□□ -0.11
USP49-204ENST00000423567 PITPNM1O00562 1244 aa14.37□□□□□ -0.11
USP49-204ENST00000423567 SNRPA1P09661 255 aaKnown RBP14.37□□□□□ -0.11
USP49-204ENST00000423567 CANXP27824 592 aaKnown RBP14.37□□□□□ -0.11
USP49-204ENST00000423567 ZBTB1Q9Y2K1 713 aa14.37□□□□□ -0.11
USP49-204ENST00000423567 SOS1Q07889 1333 aaPredicted RBP14.37□□□□□ -0.11
USP49-204ENST00000423567 A0A087WZG4 1122 aa14.36□□□□□ -0.11
USP49-204ENST00000423567 THUMPD2Q9BTF0 503 aaKnown RBP14.36□□□□□ -0.11
USP49-204ENST00000423567 MIS18AQ9NYP9 233 aa14.36□□□□□ -0.11
USP49-204ENST00000423567 RRP7AQ9Y3A4 280 aaKnown RBP14.36□□□□□ -0.11
USP49-204ENST00000423567 SIPA1L3O60292 1781 aaPredicted RBP14.36□□□□□ -0.11
USP49-204ENST00000423567 UBR2Q8IWV8 1755 aa14.36□□□□□ -0.11
USP49-204ENST00000423567 COL15A1P39059 1388 aa14.35□□□□□ -0.11
USP49-204ENST00000423567 MMP10P09238 476 aa14.35□□□□□ -0.11
USP49-204ENST00000423567 GYS1P13807 737 aa14.35□□□□□ -0.11
USP49-204ENST00000423567 MRS2Q9HD23 443 aa14.35□□□□□ -0.11
USP49-204ENST00000423567 ZNF330Q9Y3S2 320 aaPredicted RBP14.35□□□□□ -0.11
USP49-204ENST00000423567 CD2APQ9Y5K6 639 aa14.35□□□□□ -0.11
USP49-204ENST00000423567 USP42Q9H9J4 1324 aaKnown RBP14.35□□□□□ -0.11
USP49-204ENST00000423567 SRP68Q9UHB9 627 aaKnown RBP14.34□□□□□ -0.11
USP49-204ENST00000423567 PARP3Q9Y6F1 533 aa14.34□□□□□ -0.11
USP49-204ENST00000423567 COL24A1Q17RW2 1714 aa14.34□□□□□ -0.11
USP49-204ENST00000423567 IL6STP40189 918 aaPredicted RBP14.33□□□□□ -0.12
USP49-204ENST00000423567 BABAM1Q9NWV8 329 aa14.33□□□□□ -0.12
USP49-204ENST00000423567 NARFQ9UHQ1 456 aa14.33□□□□□ -0.12
USP49-204ENST00000423567 TSPYL4Q9UJ04 414 aa14.33□□□□□ -0.12
USP49-204ENST00000423567 MYH14Q7Z406 1995 aaKnown RBP14.33□□□□□ -0.12
USP49-204ENST00000423567 EIF5P55010 431 aaKnown RBP14.32□□□□□ -0.12
USP49-204ENST00000423567 USPL1Q5W0Q7 1092 aa14.32□□□□□ -0.12
USP49-204ENST00000423567 APAF1O14727 1248 aa14.31□□□□□ -0.12
USP49-204ENST00000423567 A1BGP04217 495 aa14.31□□□□□ -0.12
USP49-204ENST00000423567 EIF4A1P60842 406 aaKnown RBP14.31□□□□□ -0.12
USP49-204ENST00000423567 FKBP8Q14318 412 aa14.31□□□□□ -0.12
USP49-204ENST00000423567 GPR162Q16538 588 aa14.31□□□□□ -0.12
USP49-204ENST00000423567 PELP1Q8IZL8 1130 aaKnown RBP14.31□□□□□ -0.12
USP49-204ENST00000423567 USP16Q9Y5T5 823 aa14.31□□□□□ -0.12
USP49-204ENST00000423567 DLG5Q8TDM6 1919 aa14.31□□□□□ -0.12
USP49-204ENST00000423567 PRAMEF22A3QJZ6 481 aa14.3□□□□□ -0.12
USP49-204ENST00000423567 CCDC184Q52MB2 194 aa14.3□□□□□ -0.12
USP49-204ENST00000423567 NLGN2Q8NFZ4 835 aa14.3□□□□□ -0.12
USP49-204ENST00000423567 GIGYF1O75420 1035 aaPredicted RBP14.29□□□□□ -0.12
USP49-204ENST00000423567 CALD1Q05682 793 aaKnown RBP14.29□□□□□ -0.12
USP49-204ENST00000423567 TRIM35Q9UPQ4 493 aa14.29□□□□□ -0.12
USP49-204ENST00000423567 LAS1LQ9Y4W2 734 aaKnown RBP14.29□□□□□ -0.12
USP49-204ENST00000423567 C4AP0C0L4 1744 aa14.28□□□□□ -0.12
USP49-204ENST00000423567 TBC1D2BQ9UPU7 963 aa14.28□□□□□ -0.12
USP49-204ENST00000423567 PIP4K2AP48426 406 aaPredicted RBP14.27□□□□□ -0.13
USP49-204ENST00000423567 DZIP3Q86Y13 1208 aaKnown RBP14.27□□□□□ -0.13
USP49-204ENST00000423567 CHL1O00533 1208 aa14.26□□□□□ -0.13
USP49-204ENST00000423567 TM4SF1P30408 202 aa14.26□□□□□ -0.13
USP49-204ENST00000423567 DDR1Q08345 913 aa14.26□□□□□ -0.13
USP49-204ENST00000423567 NFIXQ14938 502 aa14.26□□□□□ -0.13
USP49-204ENST00000423567 BICDL1Q6ZP65 573 aa14.26□□□□□ -0.13
USP49-204ENST00000423567 ZNF652Q9Y2D9 606 aa14.26□□□□□ -0.13
USP49-204ENST00000423567 KDM3BQ7LBC6 1761 aa14.26□□□□□ -0.13
USP49-204ENST00000423567 POLRMTO00411 1230 aaKnown RBP14.25□□□□□ -0.13
USP49-204ENST00000423567 GRIN3BO60391 1043 aa14.25□□□□□ -0.13
USP49-204ENST00000423567 TGFB2P61812 414 aa14.25□□□□□ -0.13
USP49-204ENST00000423567 SPDYE1Q8NFV5 336 aaPredicted RBP14.25□□□□□ -0.13
USP49-204ENST00000423567 CFAP44Q96MT7 982 aa14.25□□□□□ -0.13
USP49-204ENST00000423567 BCL2L12Q9HB09 334 aa14.25□□□□□ -0.13
USP49-204ENST00000423567 C10orf71Q711Q0 1435 aa14.24□□□□□ -0.13
USP49-204ENST00000423567 ERBB4Q15303 1308 aa14.24□□□□□ -0.13
USP49-204ENST00000423567 NBPF26B4DH59 902 aa14.24□□□□□ -0.13
USP49-204ENST00000423567 CAMTA2O94983 1202 aa14.24□□□□□ -0.13
USP49-204ENST00000423567 EIF2S2P20042 333 aaKnown RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms