RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 ZPR1O75312 459 aa21.83■■□□□ 1.09
LINC00404-201ENST00000418660 FKBP8Q14318 412 aa21.83■■□□□ 1.09
LINC00404-201ENST00000418660 MAPK8IP3Q9UPT6 1336 aa21.82■■□□□ 1.08
LINC00404-201ENST00000418660 GRIN3BO60391 1043 aa21.82■■□□□ 1.08
LINC00404-201ENST00000418660 YBX3P16989 372 aaKnown RBP eCLIP21.82■■□□□ 1.08
LINC00404-201ENST00000418660 CANXP27824 592 aaKnown RBP21.82■■□□□ 1.08
LINC00404-201ENST00000418660 NFE2L2Q16236 605 aa21.82■■□□□ 1.08
LINC00404-201ENST00000418660 COL15A1P39059 1388 aa21.82■■□□□ 1.08
LINC00404-201ENST00000418660 TAF7Q15545 349 aaPredicted RBP21.81■■□□□ 1.08
LINC00404-201ENST00000418660 USPL1Q5W0Q7 1092 aa21.81■■□□□ 1.08
LINC00404-201ENST00000418660 NARFQ9UHQ1 456 aa21.81■■□□□ 1.08
LINC00404-201ENST00000418660 EIF5P55010 431 aaKnown RBP21.8■■□□□ 1.08
LINC00404-201ENST00000418660 TM4SF1P30408 202 aa21.79■■□□□ 1.08
LINC00404-201ENST00000418660 TGFB2P61812 414 aa21.79■■□□□ 1.08
LINC00404-201ENST00000418660 PRKRIP1Q9H875 184 aaPredicted RBP21.79■■□□□ 1.08
LINC00404-201ENST00000418660 C10orf71Q711Q0 1435 aa21.79■■□□□ 1.08
LINC00404-201ENST00000418660 A0A087WZG4 1122 aa21.78■■□□□ 1.08
LINC00404-201ENST00000418660 A1BGP04217 495 aa21.77■■□□□ 1.08
LINC00404-201ENST00000418660 SNRPA1P09661 255 aaKnown RBP21.77■■□□□ 1.08
LINC00404-201ENST00000418660 DDR1Q08345 913 aa21.77■■□□□ 1.08
LINC00404-201ENST00000418660 KIF13BQ9NQT8 1826 aa21.77■■□□□ 1.08
LINC00404-201ENST00000418660 IL6STP40189 918 aaPredicted RBP21.76■■□□□ 1.07
LINC00404-201ENST00000418660 PNISRQ8TF01 805 aaKnown RBP21.76■■□□□ 1.07
LINC00404-201ENST00000418660 USP16Q9Y5T5 823 aa21.76■■□□□ 1.07
LINC00404-201ENST00000418660 CHD4Q14839 1912 aa21.76■■□□□ 1.07
LINC00404-201ENST00000418660 DLG5Q8TDM6 1919 aa21.76■■□□□ 1.07
LINC00404-201ENST00000418660 POLRMTO00411 1230 aaKnown RBP21.75■■□□□ 1.07
LINC00404-201ENST00000418660 BCL2L12Q9HB09 334 aa21.75■■□□□ 1.07
LINC00404-201ENST00000418660 PXDNLA1KZ92 1463 aa21.75■■□□□ 1.07
LINC00404-201ENST00000418660 MIS18AQ9NYP9 233 aa21.74■■□□□ 1.07
LINC00404-201ENST00000418660 PRAMEF22A3QJZ6 481 aa21.73■■□□□ 1.07
LINC00404-201ENST00000418660 NFIXQ14938 502 aa21.73■■□□□ 1.07
LINC00404-201ENST00000418660 A0A0G2JLW4 131 aa21.72■■□□□ 1.07
LINC00404-201ENST00000418660 RIPK4P57078 832 aa21.72■■□□□ 1.07
LINC00404-201ENST00000418660 WDR43Q15061 677 aaKnown RBP eCLIP21.72■■□□□ 1.07
LINC00404-201ENST00000418660 NPM2Q86SE8 214 aaKnown RBP21.72■■□□□ 1.07
LINC00404-201ENST00000418660 THUMPD2Q9BTF0 503 aaKnown RBP21.72■■□□□ 1.07
LINC00404-201ENST00000418660 WWC3Q9ULE0 1092 aa21.72■■□□□ 1.07
LINC00404-201ENST00000418660 ZNF330Q9Y3S2 320 aaPredicted RBP21.72■■□□□ 1.07
LINC00404-201ENST00000418660 KIAA1551Q9HCM1 1747 aa21.72■■□□□ 1.07
LINC00404-201ENST00000418660 UTRNP46939 3433 aa21.71■■□□□ 1.07
LINC00404-201ENST00000418660 DPEP1P16444 411 aa21.71■■□□□ 1.07
LINC00404-201ENST00000418660 TMPOP42166 694 aaKnown RBP21.71■■□□□ 1.07
LINC00404-201ENST00000418660 TBC1D2BQ9UPU7 963 aa21.71■■□□□ 1.07
LINC00404-201ENST00000418660 ZNF784Q8NCA9 323 aaPredicted RBP21.7■■□□□ 1.06
LINC00404-201ENST00000418660 LMOD3Q0VAK6 560 aa21.69■■□□□ 1.06
LINC00404-201ENST00000418660 RUNDC1Q96C34 613 aa21.69■■□□□ 1.06
LINC00404-201ENST00000418660 KDM3BQ7LBC6 1761 aa21.69■■□□□ 1.06
LINC00404-201ENST00000418660 N4BP2Q86UW6 1770 aaPredicted RBP21.69■■□□□ 1.06
LINC00404-201ENST00000418660 SERPINB2P05120 415 aa21.68■■□□□ 1.06
LINC00404-201ENST00000418660 EIF4A1P60842 406 aaKnown RBP21.68■■□□□ 1.06
LINC00404-201ENST00000418660 CCDC146Q8IYE0 955 aa21.68■■□□□ 1.06
LINC00404-201ENST00000418660 ADAMTS8Q9UP79 889 aa21.68■■□□□ 1.06
LINC00404-201ENST00000418660 KCNA3P22001 575 aa21.67■■□□□ 1.06
LINC00404-201ENST00000418660 PIP4K2AP48426 406 aaPredicted RBP21.67■■□□□ 1.06
LINC00404-201ENST00000418660 DZIP3Q86Y13 1208 aaKnown RBP21.67■■□□□ 1.06
LINC00404-201ENST00000418660 ZNF316A6NFI3 1004 aaPredicted RBP21.66■■□□□ 1.06
LINC00404-201ENST00000418660 GIGYF1O75420 1035 aaPredicted RBP21.66■■□□□ 1.06
LINC00404-201ENST00000418660 CAMTA2O94983 1202 aa21.66■■□□□ 1.06
LINC00404-201ENST00000418660 TBC1D9BQ66K14 1250 aa21.66■■□□□ 1.06
LINC00404-201ENST00000418660 BICDL1Q6ZP65 573 aa21.66■■□□□ 1.06
LINC00404-201ENST00000418660 BCS1LQ9Y276 419 aa21.66■■□□□ 1.06
LINC00404-201ENST00000418660 SCN7AQ01118 1682 aa21.66■■□□□ 1.06
LINC00404-201ENST00000418660 NBPF26B4DH59 902 aa21.65■■□□□ 1.06
LINC00404-201ENST00000418660 NBPF10Q6P3W6 841 aaKnown RBP21.65■■□□□ 1.06
LINC00404-201ENST00000418660 NBPF15Q8N660 670 aa21.65■■□□□ 1.06
LINC00404-201ENST00000418660 BABAM1Q9NWV8 329 aa21.65■■□□□ 1.06
LINC00404-201ENST00000418660 PIM2Q9P1W9 311 aa21.65■■□□□ 1.06
LINC00404-201ENST00000418660 RRP7AQ9Y3A4 280 aaKnown RBP21.65■■□□□ 1.06
LINC00404-201ENST00000418660 NRXN2Q9P2S2 1712 aa21.65■■□□□ 1.06
LINC00404-201ENST00000418660 NEUROD2Q15784 382 aa21.64■■□□□ 1.05
LINC00404-201ENST00000418660 TSPYL4Q9UJ04 414 aa21.64■■□□□ 1.05
LINC00404-201ENST00000418660 GOLGB1Q14789 3259 aaKnown RBP21.63■■□□□ 1.05
LINC00404-201ENST00000418660 CHRNA5P30532 468 aa21.63■■□□□ 1.05
LINC00404-201ENST00000418660 AFDNP55196 1824 aaKnown RBP21.63■■□□□ 1.05
LINC00404-201ENST00000418660 LAMB4A4D0S4 1761 aa21.62■■□□□ 1.05
LINC00404-201ENST00000418660 SETDB2Q96T68 719 aa21.62■■□□□ 1.05
LINC00404-201ENST00000418660 CARMIL3Q8ND23 1372 aa21.61■■□□□ 1.05
LINC00404-201ENST00000418660 DALRD3Q5D0E6 543 aaKnown RBP21.61■■□□□ 1.05
LINC00404-201ENST00000418660 CLEC4GQ6UXB4 293 aa21.61■■□□□ 1.05
LINC00404-201ENST00000418660 BRCA1P38398 1863 aaKnown RBP21.6■■□□□ 1.05
LINC00404-201ENST00000418660 RGL2O15211 777 aa21.6■■□□□ 1.05
LINC00404-201ENST00000418660 TRIM35Q9UPQ4 493 aa21.6■■□□□ 1.05
LINC00404-201ENST00000418660 ZNF652Q9Y2D9 606 aa21.6■■□□□ 1.05
LINC00404-201ENST00000418660 BCORQ6W2J9 1755 aa21.6■■□□□ 1.05
LINC00404-201ENST00000418660 ARHGAP27Q6ZUM4 889 aa21.58■■□□□ 1.05
LINC00404-201ENST00000418660 PRR5LQ6MZQ0 368 aa21.57■■□□□ 1.04
LINC00404-201ENST00000418660 BRIP1Q9BX63 1249 aa21.57■■□□□ 1.04
LINC00404-201ENST00000418660 ERBB4Q15303 1308 aa21.56■■□□□ 1.04
LINC00404-201ENST00000418660 H0YIN7 160 aa21.56■■□□□ 1.04
LINC00404-201ENST00000418660 CHL1O00533 1208 aa21.56■■□□□ 1.04
LINC00404-201ENST00000418660 C2CD5Q86YS7 1000 aa21.56■■□□□ 1.04
LINC00404-201ENST00000418660 PDZRN3Q9UPQ7 1066 aa21.56■■□□□ 1.04
LINC00404-201ENST00000418660 ADCY9O60503 1353 aa21.56■■□□□ 1.04
LINC00404-201ENST00000418660 PDE6BP35913 854 aa21.55■■□□□ 1.04
LINC00404-201ENST00000418660 CNBD1Q8NA66 436 aa21.55■■□□□ 1.04
LINC00404-201ENST00000418660 ARFGEF1Q9Y6D6 1849 aa21.55■■□□□ 1.04
LINC00404-201ENST00000418660 ATP10DQ9P241 1426 aa21.55■■□□□ 1.04
LINC00404-201ENST00000418660 APAF1O14727 1248 aa21.54■■□□□ 1.04
LINC00404-201ENST00000418660 NGEFQ8N5V2 710 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms