RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 IL25Q9H293 177 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 AMOTL2Q9Y2J4 779 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 MAP3K5Q99683 1374 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 SLIT1O75093 1534 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 NUTM2FA1L443 756 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 TRIM6-TRIM34B2RNG4 842 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 GADD45BO75293 160 aaPredicted RBP11.87□□□□□ -0.51
CD44-206ENST00000415148 RILPL2Q969X0 211 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 USP44Q9H0E7 712 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 ANKARQ7Z5J8 1434 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 DIP2AQ14689 1571 aa11.87□□□□□ -0.51
CD44-206ENST00000415148 PLEKHG5O94827 1062 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 TPRNQ4KMQ1 711 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 KLHL34Q8N239 644 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 SYAP1Q96A49 352 aaPredicted RBP11.86□□□□□ -0.51
CD44-206ENST00000415148 ANO2Q9NQ90 1003 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 ZKSCAN5Q9Y2L8 839 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 TCHHQ07283 1943 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 ARHGAP23Q9P227 1491 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 NWD1Q149M9 1564 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 UQCRHLA0A096LP55 91 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 UQCRHP07919 91 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 UBTFL1P0CB47 393 aaPredicted RBP11.86□□□□□ -0.51
CD44-206ENST00000415148 HSPA4P34932 840 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 UNC5CLQ8IV45 518 aa11.86□□□□□ -0.51
CD44-206ENST00000415148 LRRFIP2Q9Y608 721 aaKnown RBP11.86□□□□□ -0.51
CD44-206ENST00000415148 SOX12O15370 315 aa11.85□□□□□ -0.51
CD44-206ENST00000415148 HOXC9P31274 260 aa11.85□□□□□ -0.51
CD44-206ENST00000415148 POLA2Q14181 598 aa11.85□□□□□ -0.51
CD44-206ENST00000415148 IL17REQ8NFR9 667 aa11.85□□□□□ -0.51
CD44-206ENST00000415148 PLPPR3Q6T4P5 718 aa11.85□□□□□ -0.51
CD44-206ENST00000415148 UPF3BQ9BZI7 483 aaKnown RBP11.85□□□□□ -0.51
CD44-206ENST00000415148 WDR33Q9C0J8 1336 aaKnown RBP11.85□□□□□ -0.51
CD44-206ENST00000415148 PHF14O94880 888 aa11.84□□□□□ -0.51
CD44-206ENST00000415148 HOXB7P09629 217 aa11.84□□□□□ -0.51
CD44-206ENST00000415148 ZNF830Q96NB3 372 aaPredicted RBP11.84□□□□□ -0.51
CD44-206ENST00000415148 RGPD8O14715 1765 aaPredicted RBP11.84□□□□□ -0.51
CD44-206ENST00000415148 NLRP6P59044 892 aa11.84□□□□□ -0.51
CD44-206ENST00000415148 HSP90AB4PQ58FF6 505 aa11.84□□□□□ -0.51
CD44-206ENST00000415148 TSC1Q92574 1164 aa11.84□□□□□ -0.51
CD44-206ENST00000415148 SLC26A8Q96RN1 970 aa11.84□□□□□ -0.51
CD44-206ENST00000415148 MARF1Q9Y4F3 1742 aaKnown RBP11.83□□□□□ -0.52
CD44-206ENST00000415148 C17orf53Q8N3J3 647 aaPredicted RBP11.83□□□□□ -0.52
CD44-206ENST00000415148 KIF1BPQ96EK5 621 aa11.83□□□□□ -0.52
CD44-206ENST00000415148 LARP6Q9BRS8 491 aaKnown RBP11.83□□□□□ -0.52
CD44-206ENST00000415148 CCDC39Q9UFE4 941 aa11.83□□□□□ -0.52
CD44-206ENST00000415148 CEMIPQ8WUJ3 1361 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 CSPP1Q1MSJ5 1256 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 HDGFL1Q5TGJ6 251 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 TMEM87AQ8NBN3 555 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 RHPN1Q8TCX5 695 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 NECTIN2Q92692 538 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 USP42Q9H9J4 1324 aaKnown RBP11.82□□□□□ -0.52
CD44-206ENST00000415148 SGSM2O43147 1006 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 LETM1O95202 739 aaPredicted RBP11.82□□□□□ -0.52
CD44-206ENST00000415148 UVSSAQ2YD98 709 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 CNTROBQ8N137 903 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 PI4K2BQ8TCG2 481 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 TSPY26PQ9H489 355 aa11.82□□□□□ -0.52
CD44-206ENST00000415148 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.82□□□□□ -0.52
CD44-206ENST00000415148 RAD50Q92878 1312 aa11.81□□□□□ -0.52
CD44-206ENST00000415148 SURF6O75683 361 aaKnown RBP11.81□□□□□ -0.52
CD44-206ENST00000415148 MAP4K4O95819 1239 aaPredicted RBP11.81□□□□□ -0.52
CD44-206ENST00000415148 PPP1R42Q7Z4L9 355 aa11.81□□□□□ -0.52
CD44-206ENST00000415148 FAM184AQ8NB25 1140 aa11.81□□□□□ -0.52
CD44-206ENST00000415148 USP48Q86UV5 1035 aa11.81□□□□□ -0.52
CD44-206ENST00000415148 TTC41PQ6P2S7 1318 aa11.8□□□□□ -0.52
CD44-206ENST00000415148 MED1Q15648 1581 aaPredicted RBP11.8□□□□□ -0.52
CD44-206ENST00000415148 CRYBG1Q9Y4K1 1723 aa11.8□□□□□ -0.52
CD44-206ENST00000415148 TTC14Q96N46 770 aa11.8□□□□□ -0.52
CD44-206ENST00000415148 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.8□□□□□ -0.52
CD44-206ENST00000415148 FAM177BA6PVY3 158 aa11.79□□□□□ -0.52
CD44-206ENST00000415148 NUTM1Q86Y26 1132 aa11.79□□□□□ -0.52
CD44-206ENST00000415148 THEMISQ8N1K5 641 aaPredicted RBP11.79□□□□□ -0.52
CD44-206ENST00000415148 PHAXQ9H814 394 aaKnown RBP11.79□□□□□ -0.52
CD44-206ENST00000415148 IL1RAPL2Q9NP60 686 aa11.79□□□□□ -0.52
CD44-206ENST00000415148 HDAC5Q9UQL6 1122 aa11.79□□□□□ -0.52
CD44-206ENST00000415148 EIF4A1P60842 406 aaKnown RBP11.79□□□□□ -0.52
CD44-206ENST00000415148 BEND3Q5T5X7 828 aa11.79□□□□□ -0.52
CD44-206ENST00000415148 RUFY2Q8WXA3 655 aa11.79□□□□□ -0.52
CD44-206ENST00000415148 LSG1Q9H089 658 aaKnown RBP11.79□□□□□ -0.52
CD44-206ENST00000415148 LIMCH1Q9UPQ0 1083 aa11.79□□□□□ -0.52
CD44-206ENST00000415148 SNX14Q9Y5W7 946 aa11.79□□□□□ -0.52
CD44-206ENST00000415148 KDM3BQ7LBC6 1761 aa11.79□□□□□ -0.52
CD44-206ENST00000415148 SRGAP3O43295 1099 aa11.78□□□□□ -0.52
CD44-206ENST00000415148 MTX1Q13505 466 aa11.78□□□□□ -0.52
CD44-206ENST00000415148 ABTB2Q8N961 1025 aa11.78□□□□□ -0.52
CD44-206ENST00000415148 DNAAF4Q8WXU2 420 aa11.78□□□□□ -0.52
CD44-206ENST00000415148 ATP6V1DQ9Y5K8 247 aa11.78□□□□□ -0.52
CD44-206ENST00000415148 RPAP1Q9BWH6 1393 aaPredicted RBP11.78□□□□□ -0.52
CD44-206ENST00000415148 GLRX3O76003 335 aaKnown RBP11.78□□□□□ -0.52
CD44-206ENST00000415148 PDIA4P13667 645 aaKnown RBP11.78□□□□□ -0.52
CD44-206ENST00000415148 IP6K1Q92551 441 aa11.78□□□□□ -0.52
CD44-206ENST00000415148 USP25Q9UHP3 1055 aa11.78□□□□□ -0.52
CD44-206ENST00000415148 PRDM4Q9UKN5 801 aa11.78□□□□□ -0.52
CD44-206ENST00000415148 ZSCAN22P10073 491 aaPredicted RBP11.77□□□□□ -0.52
CD44-206ENST00000415148 TTC12Q9H892 705 aaPredicted RBP11.77□□□□□ -0.52
CD44-206ENST00000415148 ADGRL3Q9HAR2 1447 aa11.77□□□□□ -0.52
CD44-206ENST00000415148 CNPY2Q9Y2B0 182 aa11.77□□□□□ -0.52
CD44-206ENST00000415148 CPA1P15085 419 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms