RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 NOB1Q9ULX3 412 aaKnown RBP18.23■□□□□ 0.51
SF3B1-204ENST00000414963 CICQ96RK0 1608 aaPredicted RBP18.23■□□□□ 0.51
SF3B1-204ENST00000414963 C5P01031 1676 aa18.22■□□□□ 0.51
SF3B1-204ENST00000414963 CYP19A1P11511 503 aaPredicted RBP18.22■□□□□ 0.51
SF3B1-204ENST00000414963 ZKSCAN2Q63HK3 967 aa18.22■□□□□ 0.51
SF3B1-204ENST00000414963 NECTIN2Q92692 538 aa18.22■□□□□ 0.51
SF3B1-204ENST00000414963 HYPKQ9NX55 129 aa18.22■□□□□ 0.51
SF3B1-204ENST00000414963 PTPRCP08575 1304 aa18.22■□□□□ 0.51
SF3B1-204ENST00000414963 ATP6V1AP38606 617 aa18.21■□□□□ 0.51
SF3B1-204ENST00000414963 PDE3AQ14432 1141 aa18.21■□□□□ 0.51
SF3B1-204ENST00000414963 LAMB4A4D0S4 1761 aa18.2■□□□□ 0.5
SF3B1-204ENST00000414963 PLIN1O60240 522 aa18.2■□□□□ 0.5
SF3B1-204ENST00000414963 ITPK1Q13572 414 aa18.2■□□□□ 0.5
SF3B1-204ENST00000414963 ATF7IPQ6VMQ6 1270 aa18.2■□□□□ 0.5
SF3B1-204ENST00000414963 LRP10Q7Z4F1 713 aa18.2■□□□□ 0.5
SF3B1-204ENST00000414963 FRAT1Q92837 279 aaPredicted RBP18.2■□□□□ 0.5
SF3B1-204ENST00000414963 NBPF26B4DH59 902 aa18.19■□□□□ 0.5
SF3B1-204ENST00000414963 PLSCR1O15162 318 aa18.19■□□□□ 0.5
SF3B1-204ENST00000414963 MS4A1P11836 297 aa18.19■□□□□ 0.5
SF3B1-204ENST00000414963 NBPF14Q5TI25 921 aa18.19■□□□□ 0.5
SF3B1-204ENST00000414963 NBPF10Q6P3W6 841 aaKnown RBP18.19■□□□□ 0.5
SF3B1-204ENST00000414963 G2E3Q7L622 706 aa18.19■□□□□ 0.5
SF3B1-204ENST00000414963 NBPF15Q8N660 670 aa18.19■□□□□ 0.5
SF3B1-204ENST00000414963 API5Q9BZZ5 524 aaKnown RBP18.19■□□□□ 0.5
SF3B1-204ENST00000414963 A1BGP04217 495 aa18.18■□□□□ 0.5
SF3B1-204ENST00000414963 TRIM27P14373 513 aa18.18■□□□□ 0.5
SF3B1-204ENST00000414963 HMGB2P26583 209 aaKnown RBP18.18■□□□□ 0.5
SF3B1-204ENST00000414963 FLIIQ13045 1269 aa18.18■□□□□ 0.5
SF3B1-204ENST00000414963 PROSER3Q2NL68 480 aa18.18■□□□□ 0.5
SF3B1-204ENST00000414963 SLC27A3Q5K4L6 730 aa18.18■□□□□ 0.5
SF3B1-204ENST00000414963 CACNA1FO60840 1977 aa18.18■□□□□ 0.5
SF3B1-204ENST00000414963 TJP1Q07157 1748 aa18.18■□□□□ 0.5
SF3B1-204ENST00000414963 CANXP27824 592 aaKnown RBP18.17■□□□□ 0.5
SF3B1-204ENST00000414963 LY75O60449 1722 aa18.17■□□□□ 0.5
SF3B1-204ENST00000414963 RC3H1Q5TC82 1133 aaKnown RBP18.16■□□□□ 0.5
SF3B1-204ENST00000414963 INTS5Q6P9B9 1019 aaKnown RBP18.16■□□□□ 0.5
SF3B1-204ENST00000414963 PHAXQ9H814 394 aaKnown RBP18.16■□□□□ 0.5
SF3B1-204ENST00000414963 CCNL1Q9UK58 526 aaPredicted RBP18.16■□□□□ 0.5
SF3B1-204ENST00000414963 APBA3O96018 575 aa18.15■□□□□ 0.5
SF3B1-204ENST00000414963 ANXA1P04083 346 aa18.15■□□□□ 0.5
SF3B1-204ENST00000414963 DZIP1LQ8IYY4 767 aaKnown RBP18.15■□□□□ 0.5
SF3B1-204ENST00000414963 CCDC87Q9NVE4 849 aa18.15■□□□□ 0.5
SF3B1-204ENST00000414963 CNTNAP4Q9C0A0 1308 aa18.15■□□□□ 0.5
SF3B1-204ENST00000414963 NEFLP07196 543 aa18.14■□□□□ 0.49
SF3B1-204ENST00000414963 MYL6BP14649 208 aa18.14■□□□□ 0.49
SF3B1-204ENST00000414963 CRKLP46109 303 aaKnown RBP18.14■□□□□ 0.49
SF3B1-204ENST00000414963 C20orf194Q5TEA3 1177 aa18.14■□□□□ 0.49
SF3B1-204ENST00000414963 LINC00116Q8NCU8 138 aa18.14■□□□□ 0.49
SF3B1-204ENST00000414963 ABCC4O15439 1325 aa18.14■□□□□ 0.49
SF3B1-204ENST00000414963 EP400Q96L91 3159 aa18.14■□□□□ 0.49
SF3B1-204ENST00000414963 RLBP1P12271 317 aa18.13■□□□□ 0.49
SF3B1-204ENST00000414963 IL6STP40189 918 aaPredicted RBP18.13■□□□□ 0.49
SF3B1-204ENST00000414963 FKBP5Q13451 457 aaPredicted RBP18.13■□□□□ 0.49
SF3B1-204ENST00000414963 COPS6Q7L5N1 327 aa18.13■□□□□ 0.49
SF3B1-204ENST00000414963 PROM2Q8N271 834 aa18.13■□□□□ 0.49
SF3B1-204ENST00000414963 TNNQ9UQP3 1299 aa18.13■□□□□ 0.49
SF3B1-204ENST00000414963 RREB1Q92766 1687 aa18.12■□□□□ 0.49
SF3B1-204ENST00000414963 DDX58O95786 925 aaKnown RBP18.12■□□□□ 0.49
SF3B1-204ENST00000414963 KSR2Q6VAB6 950 aa18.12■□□□□ 0.49
SF3B1-204ENST00000414963 PANK1Q8TE04 598 aa18.12■□□□□ 0.49
SF3B1-204ENST00000414963 XAGE3Q8WTP9 111 aa18.12■□□□□ 0.49
SF3B1-204ENST00000414963 LRRC4BQ9NT99 713 aa18.12■□□□□ 0.49
SF3B1-204ENST00000414963 ZBTB1Q9Y2K1 713 aa18.12■□□□□ 0.49
SF3B1-204ENST00000414963 PIP4K2AP48426 406 aaPredicted RBP18.11■□□□□ 0.49
SF3B1-204ENST00000414963 EIF5P55010 431 aaKnown RBP18.11■□□□□ 0.49
SF3B1-204ENST00000414963 KCNQ4P56696 695 aa18.11■□□□□ 0.49
SF3B1-204ENST00000414963 TXNRD1Q16881 649 aa18.11■□□□□ 0.49
SF3B1-204ENST00000414963 ERICH6BQ5W0A0 696 aa18.11■□□□□ 0.49
SF3B1-204ENST00000414963 INTS3Q68E01 1043 aaKnown RBP18.11■□□□□ 0.49
SF3B1-204ENST00000414963 CCDC125Q86Z20 511 aa18.11■□□□□ 0.49
SF3B1-204ENST00000414963 FTSJ3Q8IY81 847 aaKnown RBP18.11■□□□□ 0.49
SF3B1-204ENST00000414963 COL5A3P25940 1745 aaPredicted RBP18.11■□□□□ 0.49
SF3B1-204ENST00000414963 TNS1Q9HBL0 1735 aaKnown RBP18.11■□□□□ 0.49
SF3B1-204ENST00000414963 PI4KAP2A4QPH2 592 aa18.1■□□□□ 0.49
SF3B1-204ENST00000414963 PI4KAP1Q8N8J0 262 aa18.1■□□□□ 0.49
SF3B1-204ENST00000414963 CLUAP1Q96AJ1 413 aa18.1■□□□□ 0.49
SF3B1-204ENST00000414963 ADCY9O60503 1353 aa18.09■□□□□ 0.49
SF3B1-204ENST00000414963 ANKRD13DQ6ZTN6 518 aa18.09■□□□□ 0.49
SF3B1-204ENST00000414963 PLBD2Q8NHP8 589 aa18.09■□□□□ 0.49
SF3B1-204ENST00000414963 RGPD3A6NKT7 1758 aaPredicted RBP18.09■□□□□ 0.49
SF3B1-204ENST00000414963 RGPD4Q7Z3J3 1758 aa18.09■□□□□ 0.49
SF3B1-204ENST00000414963 F6X3S4 739 aa18.08■□□□□ 0.48
SF3B1-204ENST00000414963 RPS6KA4O75676 772 aa18.08■□□□□ 0.48
SF3B1-204ENST00000414963 CCT4P50991 539 aaKnown RBP18.08■□□□□ 0.48
SF3B1-204ENST00000414963 IRX6P78412 446 aaPredicted RBP18.08■□□□□ 0.48
SF3B1-204ENST00000414963 AIMP1Q12904 312 aaKnown RBP18.08■□□□□ 0.48
SF3B1-204ENST00000414963 FKBP8Q14318 412 aa18.08■□□□□ 0.48
SF3B1-204ENST00000414963 MVPQ14764 893 aaKnown RBP18.08■□□□□ 0.48
SF3B1-204ENST00000414963 TMEM57Q8N5G2 664 aa18.08■□□□□ 0.48
SF3B1-204ENST00000414963 DNAAF4Q8WXU2 420 aa18.08■□□□□ 0.48
SF3B1-204ENST00000414963 CAMKK2Q96RR4 588 aa18.08■□□□□ 0.48
SF3B1-204ENST00000414963 CRBNQ96SW2 442 aa18.08■□□□□ 0.48
SF3B1-204ENST00000414963 PXDNLA1KZ92 1463 aa18.07■□□□□ 0.48
SF3B1-204ENST00000414963 IBTKQ9P2D0 1353 aaPredicted RBP18.07■□□□□ 0.48
SF3B1-204ENST00000414963 TTLL7Q6ZT98 887 aa18.07■□□□□ 0.48
SF3B1-204ENST00000414963 MAP3K2Q9Y2U5 619 aa18.07■□□□□ 0.48
SF3B1-204ENST00000414963 A0A087WZG4 1122 aa18.06■□□□□ 0.48
SF3B1-204ENST00000414963 SF3B2Q13435 895 aaKnown RBP18.06■□□□□ 0.48
SF3B1-204ENST00000414963 AAMPQ13685 434 aa18.06■□□□□ 0.48
SF3B1-204ENST00000414963 RIC3Q7Z5B4 369 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms