RNA–Protein interactions for RNA: ENST00000399976.6

USP16-204, Transcript of ubiquitin specific peptidase 16, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP16, Length 2,963 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-204ENST00000399976 IL6STP40189 918 aaPredicted RBP9.8□□□□□ -0.84
USP16-204ENST00000399976 CNGB1Q14028 1251 aaPredicted RBP9.8□□□□□ -0.84
USP16-204ENST00000399976 SLC4A9Q96Q91 983 aa9.8□□□□□ -0.84
USP16-204ENST00000399976 LRRC4BQ9NT99 713 aa9.8□□□□□ -0.84
USP16-204ENST00000399976 PXDNLA1KZ92 1463 aa9.79□□□□□ -0.84
USP16-204ENST00000399976 PTF1AQ7RTS3 328 aa9.79□□□□□ -0.84
USP16-204ENST00000399976 AFDNP55196 1824 aaKnown RBP9.79□□□□□ -0.84
USP16-204ENST00000399976 BRPF1P55201 1214 aaPredicted RBP9.79□□□□□ -0.84
USP16-204ENST00000399976 TSPYL4Q9UJ04 414 aa9.79□□□□□ -0.84
USP16-204ENST00000399976 ATP10DQ9P241 1426 aa9.79□□□□□ -0.84
USP16-204ENST00000399976 ITPK1Q13572 414 aa9.78□□□□□ -0.84
USP16-204ENST00000399976 LINC00116Q8NCU8 138 aa9.78□□□□□ -0.84
USP16-204ENST00000399976 ZNF496Q96IT1 587 aaPredicted RBP9.78□□□□□ -0.84
USP16-204ENST00000399976 CCDC87Q9NVE4 849 aa9.78□□□□□ -0.84
USP16-204ENST00000399976 BRCA1P38398 1863 aaKnown RBP9.78□□□□□ -0.84
USP16-204ENST00000399976 ATP6V1AP38606 617 aa9.78□□□□□ -0.84
USP16-204ENST00000399976 SYTL4Q96C24 671 aaPredicted RBP9.78□□□□□ -0.84
USP16-204ENST00000399976 GOLGA2Q08379 1002 aa9.77□□□□□ -0.85
USP16-204ENST00000399976 SLFN5Q08AF3 891 aa9.77□□□□□ -0.85
USP16-204ENST00000399976 INTS5Q6P9B9 1019 aaKnown RBP9.77□□□□□ -0.85
USP16-204ENST00000399976 FAM9BQ8IZU0 186 aa9.77□□□□□ -0.85
USP16-204ENST00000399976 MBIPQ9NS73 344 aa9.77□□□□□ -0.85
USP16-204ENST00000399976 RNF123Q5XPI4 1314 aa9.77□□□□□ -0.85
USP16-204ENST00000399976 COL15A1P39059 1388 aa9.77□□□□□ -0.85
USP16-204ENST00000399976 EIF5P55010 431 aaKnown RBP9.77□□□□□ -0.85
USP16-204ENST00000399976 DEFB132Q7Z7B7 95 aa9.77□□□□□ -0.85
USP16-204ENST00000399976 PNPLA7Q6ZV29 1317 aa9.76□□□□□ -0.85
USP16-204ENST00000399976 FANCIQ9NVI1 1328 aa9.76□□□□□ -0.85
USP16-204ENST00000399976 ERVV-1B6SEH8 477 aa9.76□□□□□ -0.85
USP16-204ENST00000399976 CRKLP46109 303 aaKnown RBP9.76□□□□□ -0.85
USP16-204ENST00000399976 DCTN1Q14203 1278 aa9.75□□□□□ -0.85
USP16-204ENST00000399976 CLEC4GQ6UXB4 293 aa9.75□□□□□ -0.85
USP16-204ENST00000399976 AK7Q96M32 723 aa9.75□□□□□ -0.85
USP16-204ENST00000399976 ZNF827Q17R98 1081 aa9.75□□□□□ -0.85
USP16-204ENST00000399976 LRP10Q7Z4F1 713 aa9.75□□□□□ -0.85
USP16-204ENST00000399976 ARFGEF1Q9Y6D6 1849 aa9.75□□□□□ -0.85
USP16-204ENST00000399976 EP400Q96L91 3159 aa9.75□□□□□ -0.85
USP16-204ENST00000399976 ALDH1L2Q3SY69 923 aa9.75□□□□□ -0.85
USP16-204ENST00000399976 DDX21Q9NR30 783 aaKnown RBP eCLIP9.75□□□□□ -0.85
USP16-204ENST00000399976 RTCBQ9Y3I0 505 aaKnown RBP9.75□□□□□ -0.85
USP16-204ENST00000399976 MYH3P11055 1940 aa9.74□□□□□ -0.85
USP16-204ENST00000399976 USP42Q9H9J4 1324 aaKnown RBP9.74□□□□□ -0.85
USP16-204ENST00000399976 DNAJC10Q8IXB1 793 aa9.74□□□□□ -0.85
USP16-204ENST00000399976 MTFR1LQ9H019 292 aa9.74□□□□□ -0.85
USP16-204ENST00000399976 ANO8Q9HCE9 1232 aaPredicted RBP9.74□□□□□ -0.85
USP16-204ENST00000399976 HYPKQ9NX55 129 aa9.74□□□□□ -0.85
USP16-204ENST00000399976 NARFQ9UHQ1 456 aa9.74□□□□□ -0.85
USP16-204ENST00000399976 RRP7AQ9Y3A4 280 aaKnown RBP9.74□□□□□ -0.85
USP16-204ENST00000399976 SLC39A6Q13433 755 aa9.73□□□□□ -0.85
USP16-204ENST00000399976 RBM42Q9BTD8 480 aaKnown RBP9.73□□□□□ -0.85
USP16-204ENST00000399976 DBF4Q9UBU7 674 aaPredicted RBP9.73□□□□□ -0.85
USP16-204ENST00000399976 PDZRN3Q9UPQ7 1066 aa9.73□□□□□ -0.85
USP16-204ENST00000399976 DDX60Q8IY21 1712 aaKnown RBP9.73□□□□□ -0.85
USP16-204ENST00000399976 ANKRD31Q8N7Z5 1873 aa9.73□□□□□ -0.85
USP16-204ENST00000399976 CCDC30Q5VVM6 783 aa9.73□□□□□ -0.85
USP16-204ENST00000399976 SGIP1Q9BQI5 828 aa9.72□□□□□ -0.85
USP16-204ENST00000399976 KCNQ3O43525 872 aa9.72□□□□□ -0.85
USP16-204ENST00000399976 PDIA6Q15084 440 aa9.72□□□□□ -0.85
USP16-204ENST00000399976 TRAPPC3LQ5T215 181 aa9.72□□□□□ -0.85
USP16-204ENST00000399976 DUSP27Q5VZP5 1158 aa9.72□□□□□ -0.85
USP16-204ENST00000399976 THUMPD2Q9BTF0 503 aaKnown RBP9.72□□□□□ -0.85
USP16-204ENST00000399976 C10orf71Q711Q0 1435 aa9.72□□□□□ -0.85
USP16-204ENST00000399976 PELP1Q8IZL8 1130 aaKnown RBP9.72□□□□□ -0.85
USP16-204ENST00000399976 LRRC37AA6NMS7 1700 aa9.71□□□□□ -0.85
USP16-204ENST00000399976 NLGN1Q8N2Q7 840 aa9.71□□□□□ -0.85
USP16-204ENST00000399976 PTCD1O75127 700 aaKnown RBP9.71□□□□□ -0.86
USP16-204ENST00000399976 HSP90AB3PQ58FF7 597 aa9.71□□□□□ -0.86
USP16-204ENST00000399976 ZNF652Q9Y2D9 606 aa9.71□□□□□ -0.86
USP16-204ENST00000399976 GNPATO15228 680 aa9.7□□□□□ -0.86
USP16-204ENST00000399976 VAMP4O75379 141 aa9.7□□□□□ -0.86
USP16-204ENST00000399976 TRIM28Q13263 835 aaKnown RBP9.7□□□□□ -0.86
USP16-204ENST00000399976 USP16Q9Y5T5 823 aa9.7□□□□□ -0.86
USP16-204ENST00000399976 PTPRCP08575 1304 aa9.7□□□□□ -0.86
USP16-204ENST00000399976 MAP3K15Q6ZN16 1313 aa9.7□□□□□ -0.86
USP16-204ENST00000399976 NEUROD2Q15784 382 aa9.7□□□□□ -0.86
USP16-204ENST00000399976 TWISTNBQ3B726 338 aaPredicted RBP9.7□□□□□ -0.86
USP16-204ENST00000399976 TFCP2L1Q9NZI6 479 aa9.7□□□□□ -0.86
USP16-204ENST00000399976 ZBTB1Q9Y2K1 713 aa9.7□□□□□ -0.86
USP16-204ENST00000399976 NBPF26B4DH59 902 aa9.69□□□□□ -0.86
USP16-204ENST00000399976 NBPF10Q6P3W6 841 aaKnown RBP9.69□□□□□ -0.86
USP16-204ENST00000399976 COL23A1Q86Y22 540 aaPredicted RBP9.69□□□□□ -0.86
USP16-204ENST00000399976 NBPF15Q8N660 670 aa9.69□□□□□ -0.86
USP16-204ENST00000399976 ARHGAP45Q92619 1136 aa9.69□□□□□ -0.86
USP16-204ENST00000399976 CARMIL3Q8ND23 1372 aa9.69□□□□□ -0.86
USP16-204ENST00000399976 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.69□□□□□ -0.86
USP16-204ENST00000399976 CAMTA2O94983 1202 aa9.69□□□□□ -0.86
USP16-204ENST00000399976 HDGFL1Q5TGJ6 251 aa9.69□□□□□ -0.86
USP16-204ENST00000399976 TM4SF1P30408 202 aa9.69□□□□□ -0.86
USP16-204ENST00000399976 ARHGEF1Q92888 912 aaKnown RBP9.69□□□□□ -0.86
USP16-204ENST00000399976 COL11A2P13942 1736 aaPredicted RBP9.68□□□□□ -0.86
USP16-204ENST00000399976 C8orf58Q8NAV2 365 aa9.68□□□□□ -0.86
USP16-204ENST00000399976 PLBD2Q8NHP8 589 aa9.68□□□□□ -0.86
USP16-204ENST00000399976 GYS1P13807 737 aa9.68□□□□□ -0.86
USP16-204ENST00000399976 RFC4P35249 363 aa9.67□□□□□ -0.86
USP16-204ENST00000399976 PARP10Q53GL7 1025 aa9.67□□□□□ -0.86
USP16-204ENST00000399976 STK31Q9BXU1 1019 aa9.67□□□□□ -0.86
USP16-204ENST00000399976 SPON1Q9HCB6 807 aa9.67□□□□□ -0.86
USP16-204ENST00000399976 DDX58O95786 925 aaKnown RBP9.67□□□□□ -0.86
USP16-204ENST00000399976 GIGYF2Q6Y7W6 1299 aaKnown RBP9.67□□□□□ -0.86
USP16-204ENST00000399976 KIF6Q6ZMV9 814 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms