RNA–Protein interactions for RNA: ENST00000399973.1

USP16-202, Transcript of ubiquitin specific peptidase 16, humanhuman

TSL 3

Gene USP16, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-202ENST00000399973 COL15A1P39059 1388 aa11.14□□□□□ -0.63
USP16-202ENST00000399973 AFDNP55196 1824 aaKnown RBP11.14□□□□□ -0.63
USP16-202ENST00000399973 ZNF316A6NFI3 1004 aaPredicted RBP11.13□□□□□ -0.63
USP16-202ENST00000399973 CYP19A1P11511 503 aaPredicted RBP11.13□□□□□ -0.63
USP16-202ENST00000399973 NFE2L2Q16236 605 aa11.13□□□□□ -0.63
USP16-202ENST00000399973 CCDC146Q8IYE0 955 aa11.13□□□□□ -0.63
USP16-202ENST00000399973 ZNF496Q96IT1 587 aaPredicted RBP11.13□□□□□ -0.63
USP16-202ENST00000399973 FMNL2Q96PY5 1086 aa11.13□□□□□ -0.63
USP16-202ENST00000399973 PNNQ9H307 717 aaKnown RBP11.13□□□□□ -0.63
USP16-202ENST00000399973 SRP68Q9UHB9 627 aaKnown RBP11.13□□□□□ -0.63
USP16-202ENST00000399973 ZBTB1Q9Y2K1 713 aa11.13□□□□□ -0.63
USP16-202ENST00000399973 ZNF330Q9Y3S2 320 aaPredicted RBP11.13□□□□□ -0.63
USP16-202ENST00000399973 KCNQ3O43525 872 aa11.12□□□□□ -0.63
USP16-202ENST00000399973 MMP10P09238 476 aa11.12□□□□□ -0.63
USP16-202ENST00000399973 CANXP27824 592 aaKnown RBP11.12□□□□□ -0.63
USP16-202ENST00000399973 INTS5Q6P9B9 1019 aaKnown RBP11.12□□□□□ -0.63
USP16-202ENST00000399973 VSIG10Q8N0Z9 540 aa11.12□□□□□ -0.63
USP16-202ENST00000399973 PLEKHF1Q96S99 279 aa11.12□□□□□ -0.63
USP16-202ENST00000399973 THUMPD2Q9BTF0 503 aaKnown RBP11.12□□□□□ -0.63
USP16-202ENST00000399973 SOS1Q07889 1333 aaPredicted RBP11.11□□□□□ -0.63
USP16-202ENST00000399973 USP42Q9H9J4 1324 aaKnown RBP11.11□□□□□ -0.63
USP16-202ENST00000399973 HTATSF1O43719 755 aaKnown RBP11.11□□□□□ -0.63
USP16-202ENST00000399973 STARD3NLO95772 234 aa11.11□□□□□ -0.63
USP16-202ENST00000399973 GYS1P13807 737 aa11.11□□□□□ -0.63
USP16-202ENST00000399973 BRCA1P38398 1863 aaKnown RBP11.1□□□□□ -0.63
USP16-202ENST00000399973 GPR162Q16538 588 aa11.1□□□□□ -0.63
USP16-202ENST00000399973 NLGN1Q8N2Q7 840 aa11.1□□□□□ -0.63
USP16-202ENST00000399973 WWC3Q9ULE0 1092 aa11.1□□□□□ -0.63
USP16-202ENST00000399973 RRP7AQ9Y3A4 280 aaKnown RBP11.1□□□□□ -0.63
USP16-202ENST00000399973 C10orf71Q711Q0 1435 aa11.09□□□□□ -0.63
USP16-202ENST00000399973 CACNA1SQ13698 1873 aa11.09□□□□□ -0.63
USP16-202ENST00000399973 ZPR1O75312 459 aa11.09□□□□□ -0.63
USP16-202ENST00000399973 NEUROD2Q15784 382 aa11.09□□□□□ -0.63
USP16-202ENST00000399973 USPL1Q5W0Q7 1092 aa11.09□□□□□ -0.63
USP16-202ENST00000399973 MIS18AQ9NYP9 233 aa11.09□□□□□ -0.63
USP16-202ENST00000399973 PARP3Q9Y6F1 533 aa11.09□□□□□ -0.63
USP16-202ENST00000399973 DLEC1Q9Y238 1755 aa11.08□□□□□ -0.64
USP16-202ENST00000399973 PXDNLA1KZ92 1463 aa11.08□□□□□ -0.64
USP16-202ENST00000399973 PRAMEF22A3QJZ6 481 aa11.08□□□□□ -0.64
USP16-202ENST00000399973 PIP4K2AP48426 406 aaPredicted RBP11.08□□□□□ -0.64
USP16-202ENST00000399973 RIPK4P57078 832 aa11.08□□□□□ -0.64
USP16-202ENST00000399973 FKBP8Q14318 412 aa11.08□□□□□ -0.64
USP16-202ENST00000399973 TAF7Q15545 349 aaPredicted RBP11.08□□□□□ -0.64
USP16-202ENST00000399973 NPM2Q86SE8 214 aaKnown RBP11.08□□□□□ -0.64
USP16-202ENST00000399973 TEX13AQ9BXU3 409 aaPredicted RBP11.08□□□□□ -0.64
USP16-202ENST00000399973 CD2APQ9Y5K6 639 aa11.08□□□□□ -0.64
USP16-202ENST00000399973 NRXN2Q9P2S2 1712 aa11.08□□□□□ -0.64
USP16-202ENST00000399973 YY1P25490 414 aa11.07□□□□□ -0.64
USP16-202ENST00000399973 TMPOP42166 694 aaKnown RBP11.07□□□□□ -0.64
USP16-202ENST00000399973 LMOD3Q0VAK6 560 aa11.07□□□□□ -0.64
USP16-202ENST00000399973 PNISRQ8TF01 805 aaKnown RBP11.07□□□□□ -0.64
USP16-202ENST00000399973 RUNDC1Q96C34 613 aa11.07□□□□□ -0.64
USP16-202ENST00000399973 ADAMTS8Q9UP79 889 aa11.07□□□□□ -0.64
USP16-202ENST00000399973 ANKRD31Q8N7Z5 1873 aa11.06□□□□□ -0.64
USP16-202ENST00000399973 ANP32CO43423 234 aa11.06□□□□□ -0.64
USP16-202ENST00000399973 A1BGP04217 495 aa11.06□□□□□ -0.64
USP16-202ENST00000399973 SNRPA1P09661 255 aaKnown RBP11.06□□□□□ -0.64
USP16-202ENST00000399973 DDR1Q08345 913 aa11.06□□□□□ -0.64
USP16-202ENST00000399973 NARFQ9UHQ1 456 aa11.06□□□□□ -0.64
USP16-202ENST00000399973 COL11A2P13942 1736 aaPredicted RBP11.06□□□□□ -0.64
USP16-202ENST00000399973 ARFGEF1Q9Y6D6 1849 aa11.05□□□□□ -0.64
USP16-202ENST00000399973 A0A087WZG4 1122 aa11.05□□□□□ -0.64
USP16-202ENST00000399973 YBX3P16989 372 aaKnown RBP eCLIP11.05□□□□□ -0.643e-8■□□□□ 10.7
USP16-202ENST00000399973 IL6STP40189 918 aaPredicted RBP11.05□□□□□ -0.64
USP16-202ENST00000399973 BICDL1Q6ZP65 573 aa11.05□□□□□ -0.64
USP16-202ENST00000399973 TSPYL4Q9UJ04 414 aa11.05□□□□□ -0.64
USP16-202ENST00000399973 TBC1D2BQ9UPU7 963 aa11.05□□□□□ -0.64
USP16-202ENST00000399973 USP16Q9Y5T5 823 aa11.05□□□□□ -0.64
USP16-202ENST00000399973 NUP98P52948 1817 aa11.05□□□□□ -0.64
USP16-202ENST00000399973 ANKRD36CQ5JPF3 1778 aa11.04□□□□□ -0.64
USP16-202ENST00000399973 EIF5P55010 431 aaKnown RBP11.04□□□□□ -0.64
USP16-202ENST00000399973 LAS1LQ9Y4W2 734 aaKnown RBP11.04□□□□□ -0.64
USP16-202ENST00000399973 POLRMTO00411 1230 aaKnown RBP11.03□□□□□ -0.64
USP16-202ENST00000399973 NFIXQ14938 502 aa11.03□□□□□ -0.64
USP16-202ENST00000399973 CCDC184Q52MB2 194 aa11.03□□□□□ -0.64
USP16-202ENST00000399973 DZIP3Q86Y13 1208 aaKnown RBP11.03□□□□□ -0.64
USP16-202ENST00000399973 BCL2L12Q9HB09 334 aa11.03□□□□□ -0.64
USP16-202ENST00000399973 MRS2Q9HD23 443 aa11.03□□□□□ -0.64
USP16-202ENST00000399973 CARMIL3Q8ND23 1372 aa11.03□□□□□ -0.64
USP16-202ENST00000399973 SENP3-EIF4A1A0A087X0R7 540 aa11.02□□□□□ -0.65
USP16-202ENST00000399973 A0A0G2JLW4 131 aa11.02□□□□□ -0.65
USP16-202ENST00000399973 NPHP1O15259 732 aa11.02□□□□□ -0.65
USP16-202ENST00000399973 EIF4A1P60842 406 aaKnown RBP11.02□□□□□ -0.65
USP16-202ENST00000399973 GRIN3BO60391 1043 aa11.01□□□□□ -0.65
USP16-202ENST00000399973 SERPINB2P05120 415 aa11.01□□□□□ -0.65
USP16-202ENST00000399973 MYL6BP14649 208 aa11.01□□□□□ -0.65
USP16-202ENST00000399973 DPEP1P16444 411 aa11.01□□□□□ -0.65
USP16-202ENST00000399973 TBC1D9BQ66K14 1250 aa11.01□□□□□ -0.65
USP16-202ENST00000399973 NGEFQ8N5V2 710 aa11.01□□□□□ -0.65
USP16-202ENST00000399973 BCS1LQ9Y276 419 aa11.01□□□□□ -0.65
USP16-202ENST00000399973 NBPF26B4DH59 902 aa11□□□□□ -0.65
USP16-202ENST00000399973 APAF1O14727 1248 aa11□□□□□ -0.65
USP16-202ENST00000399973 GIGYF1O75420 1035 aaPredicted RBP11□□□□□ -0.65
USP16-202ENST00000399973 CAMTA2O94983 1202 aa11□□□□□ -0.65
USP16-202ENST00000399973 TM4SF1P30408 202 aa11□□□□□ -0.65
USP16-202ENST00000399973 TGFB2P61812 414 aa11□□□□□ -0.65
USP16-202ENST00000399973 NBPF10Q6P3W6 841 aaKnown RBP11□□□□□ -0.65
USP16-202ENST00000399973 NBPF15Q8N660 670 aa11□□□□□ -0.65
USP16-202ENST00000399973 TRIM35Q9UPQ4 493 aa11□□□□□ -0.65
USP16-202ENST00000399973 ZNF652Q9Y2D9 606 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms