RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 HDGFL1Q5TGJ6 251 aa19■□□□□ 0.63
CAPN3-207ENST00000397200 TEX13AQ9BXU3 409 aaPredicted RBP19■□□□□ 0.63
CAPN3-207ENST00000397200 APBA3O96018 575 aa19■□□□□ 0.63
CAPN3-207ENST00000397200 ATP6V1AP38606 617 aa19■□□□□ 0.63
CAPN3-207ENST00000397200 SLC4A9Q96Q91 983 aa19■□□□□ 0.63
CAPN3-207ENST00000397200 CCDC30Q5VVM6 783 aa18.99■□□□□ 0.63
CAPN3-207ENST00000397200 DNAJC10Q8IXB1 793 aa18.99■□□□□ 0.63
CAPN3-207ENST00000397200 NECTIN2Q92692 538 aa18.99■□□□□ 0.63
CAPN3-207ENST00000397200 ALDH1L2Q3SY69 923 aa18.98■□□□□ 0.63
CAPN3-207ENST00000397200 USP16Q9Y5T5 823 aa18.98■□□□□ 0.63
CAPN3-207ENST00000397200 CCNL1Q9UK58 526 aaPredicted RBP18.97■□□□□ 0.63
CAPN3-207ENST00000397200 CACNA1FO60840 1977 aa18.97■□□□□ 0.63
CAPN3-207ENST00000397200 RGPD3A6NKT7 1758 aaPredicted RBP18.97■□□□□ 0.63
CAPN3-207ENST00000397200 RGPD4Q7Z3J3 1758 aa18.97■□□□□ 0.63
CAPN3-207ENST00000397200 TCERG1O14776 1098 aaKnown RBP18.96■□□□□ 0.63
CAPN3-207ENST00000397200 STARD3NLO95772 234 aa18.96■□□□□ 0.63
CAPN3-207ENST00000397200 SF3B2Q13435 895 aaKnown RBP18.96■□□□□ 0.63
CAPN3-207ENST00000397200 CENPQQ7L2Z9 268 aaPredicted RBP18.96■□□□□ 0.63
CAPN3-207ENST00000397200 SSH1Q8WYL5 1049 aa18.96■□□□□ 0.63
CAPN3-207ENST00000397200 STK31Q9BXU1 1019 aa18.96■□□□□ 0.63
CAPN3-207ENST00000397200 SMC4Q9NTJ3 1288 aa18.96■□□□□ 0.63
CAPN3-207ENST00000397200 COL5A3P25940 1745 aaPredicted RBP18.96■□□□□ 0.63
CAPN3-207ENST00000397200 PLSCR1O15162 318 aa18.96■□□□□ 0.63
CAPN3-207ENST00000397200 AAMPQ13685 434 aa18.96■□□□□ 0.63
CAPN3-207ENST00000397200 BCL2L13Q9BXK5 485 aa18.96■□□□□ 0.63
CAPN3-207ENST00000397200 ITPK1Q13572 414 aa18.95■□□□□ 0.62
CAPN3-207ENST00000397200 TAF1LQ8IZX4 1826 aa18.94■□□□□ 0.62
CAPN3-207ENST00000397200 MS4A1P11836 297 aa18.94■□□□□ 0.62
CAPN3-207ENST00000397200 SLC27A3Q5K4L6 730 aa18.94■□□□□ 0.62
CAPN3-207ENST00000397200 CYP19A1P11511 503 aaPredicted RBP18.93■□□□□ 0.62
CAPN3-207ENST00000397200 CHPF2Q9P2E5 772 aa18.93■□□□□ 0.62
CAPN3-207ENST00000397200 DBF4Q9UBU7 674 aaPredicted RBP18.93■□□□□ 0.62
CAPN3-207ENST00000397200 ERBB4Q15303 1308 aa18.93■□□□□ 0.62
CAPN3-207ENST00000397200 SLC4A2P04920 1241 aa18.92■□□□□ 0.62
CAPN3-207ENST00000397200 KCNQ4P56696 695 aa18.92■□□□□ 0.62
CAPN3-207ENST00000397200 MRPL50Q8N5N7 158 aaKnown RBP18.92■□□□□ 0.62
CAPN3-207ENST00000397200 TXNRD1Q16881 649 aa18.92■□□□□ 0.62
CAPN3-207ENST00000397200 CCDC125Q86Z20 511 aa18.92■□□□□ 0.62
CAPN3-207ENST00000397200 A1BGP04217 495 aa18.91■□□□□ 0.62
CAPN3-207ENST00000397200 BAG6P46379 1132 aa18.91■□□□□ 0.62
CAPN3-207ENST00000397200 LINC00116Q8NCU8 138 aa18.91■□□□□ 0.62
CAPN3-207ENST00000397200 DDX21Q9NR30 783 aaKnown RBP eCLIP18.91■□□□□ 0.62
CAPN3-207ENST00000397200 HMGB2P26583 209 aaKnown RBP18.9■□□□□ 0.62
CAPN3-207ENST00000397200 CANXP27824 592 aaKnown RBP18.9■□□□□ 0.62
CAPN3-207ENST00000397200 CRKLP46109 303 aaKnown RBP18.9■□□□□ 0.62
CAPN3-207ENST00000397200 BRPF1P55201 1214 aaPredicted RBP18.9■□□□□ 0.62
CAPN3-207ENST00000397200 LRRC4BQ9NT99 713 aa18.9■□□□□ 0.62
CAPN3-207ENST00000397200 KIF16BQ96L93 1317 aa18.9■□□□□ 0.62
CAPN3-207ENST00000397200 RREB1Q92766 1687 aa18.9■□□□□ 0.62
CAPN3-207ENST00000397200 ANXA1P04083 346 aa18.89■□□□□ 0.62
CAPN3-207ENST00000397200 MYL6BP14649 208 aa18.89■□□□□ 0.62
CAPN3-207ENST00000397200 PIP4K2AP48426 406 aaPredicted RBP18.89■□□□□ 0.62
CAPN3-207ENST00000397200 PDIA6Q15084 440 aa18.89■□□□□ 0.62
CAPN3-207ENST00000397200 PROSER3Q2NL68 480 aa18.89■□□□□ 0.62
CAPN3-207ENST00000397200 PANK1Q8TE04 598 aa18.89■□□□□ 0.62
CAPN3-207ENST00000397200 CCDC87Q9NVE4 849 aa18.89■□□□□ 0.62
CAPN3-207ENST00000397200 HYPKQ9NX55 129 aa18.89■□□□□ 0.62
CAPN3-207ENST00000397200 MYH14Q7Z406 1995 aaKnown RBP18.89■□□□□ 0.62
CAPN3-207ENST00000397200 C4BP0C0L5 1744 aa18.89■□□□□ 0.61
CAPN3-207ENST00000397200 NBPF26B4DH59 902 aa18.89■□□□□ 0.61
CAPN3-207ENST00000397200 EN1Q05925 392 aaPredicted RBP18.89■□□□□ 0.61
CAPN3-207ENST00000397200 NBPF14Q5TI25 921 aa18.89■□□□□ 0.61
CAPN3-207ENST00000397200 NBPF10Q6P3W6 841 aaKnown RBP18.89■□□□□ 0.61
CAPN3-207ENST00000397200 PROM2Q8N271 834 aa18.89■□□□□ 0.61
CAPN3-207ENST00000397200 NBPF15Q8N660 670 aa18.89■□□□□ 0.61
CAPN3-207ENST00000397200 FRAT1Q92837 279 aaPredicted RBP18.89■□□□□ 0.61
CAPN3-207ENST00000397200 CNTNAP4Q9C0A0 1308 aa18.88■□□□□ 0.61
CAPN3-207ENST00000397200 CLUAP1Q96AJ1 413 aa18.88■□□□□ 0.61
CAPN3-207ENST00000397200 ZBTB1Q9Y2K1 713 aa18.88■□□□□ 0.61
CAPN3-207ENST00000397200 INTS5Q6P9B9 1019 aaKnown RBP18.87■□□□□ 0.61
CAPN3-207ENST00000397200 CAMKK2Q96RR4 588 aa18.87■□□□□ 0.61
CAPN3-207ENST00000397200 COG6Q9Y2V7 657 aa18.87■□□□□ 0.61
CAPN3-207ENST00000397200 RLBP1P12271 317 aa18.86■□□□□ 0.61
CAPN3-207ENST00000397200 FLIIQ13045 1269 aa18.86■□□□□ 0.61
CAPN3-207ENST00000397200 EZH2Q15910 746 aaKnown RBP18.86■□□□□ 0.61
CAPN3-207ENST00000397200 RC3H1Q5TC82 1133 aaKnown RBP18.86■□□□□ 0.61
CAPN3-207ENST00000397200 ZKSCAN2Q63HK3 967 aa18.86■□□□□ 0.61
CAPN3-207ENST00000397200 G2E3Q7L622 706 aa18.86■□□□□ 0.61
CAPN3-207ENST00000397200 PHAXQ9H814 394 aaKnown RBP18.86■□□□□ 0.61
CAPN3-207ENST00000397200 NOB1Q9ULX3 412 aaKnown RBP18.86■□□□□ 0.61
CAPN3-207ENST00000397200 IPO8O15397 1037 aaKnown RBP18.85■□□□□ 0.61
CAPN3-207ENST00000397200 ZNF330Q9Y3S2 320 aaPredicted RBP18.85■□□□□ 0.61
CAPN3-207ENST00000397200 IL6STP40189 918 aaPredicted RBP18.85■□□□□ 0.61
CAPN3-207ENST00000397200 ILDR2Q71H61 639 aa18.85■□□□□ 0.61
CAPN3-207ENST00000397200 DEFB132Q7Z7B7 95 aa18.85■□□□□ 0.61
CAPN3-207ENST00000397200 NPM2Q86SE8 214 aaKnown RBP18.85■□□□□ 0.61
CAPN3-207ENST00000397200 TNNQ9UQP3 1299 aa18.85■□□□□ 0.61
CAPN3-207ENST00000397200 PTPRCP08575 1304 aa18.85■□□□□ 0.61
CAPN3-207ENST00000397200 LRP10Q7Z4F1 713 aa18.84■□□□□ 0.61
CAPN3-207ENST00000397200 UPF1Q92900 1129 aaKnown RBP eCLIP18.84■□□□□ 0.61
CAPN3-207ENST00000397200 AK7Q96M32 723 aa18.84■□□□□ 0.61
CAPN3-207ENST00000397200 AIMP1Q12904 312 aaKnown RBP18.83■□□□□ 0.61
CAPN3-207ENST00000397200 FKBP5Q13451 457 aaPredicted RBP18.83■□□□□ 0.61
CAPN3-207ENST00000397200 MVPQ14764 893 aaKnown RBP18.83■□□□□ 0.61
CAPN3-207ENST00000397200 COPS6Q7L5N1 327 aa18.83■□□□□ 0.61
CAPN3-207ENST00000397200 XAGE3Q8WTP9 111 aa18.83■□□□□ 0.61
CAPN3-207ENST00000397200 ARHGAP45Q92619 1136 aa18.83■□□□□ 0.61
CAPN3-207ENST00000397200 GNPATO15228 680 aa18.82■□□□□ 0.6
CAPN3-207ENST00000397200 ATF7IPQ6VMQ6 1270 aa18.82■□□□□ 0.6
CAPN3-207ENST00000397200 API5Q9BZZ5 524 aaKnown RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms