RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 MPNDQ8N594 471 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 CCDC148Q8NFR7 591 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 NUDT16Q96DE0 195 aaKnown RBP8.34□□□□□ -1.07
UPF2-203ENST00000397053 BICD1Q96G01 975 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 BOLA2Q9H3K6 86 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 STX6O43752 255 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 ECM2O94769 699 aaPredicted RBP8.34□□□□□ -1.07
UPF2-203ENST00000397053 DNA2P51530 1060 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 ST5P78524 1137 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 MTERF4Q7Z6M4 381 aaKnown RBP8.34□□□□□ -1.07
UPF2-203ENST00000397053 CCDC102AQ96A19 550 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 LRRC45Q96CN5 670 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 TCP11L1Q9NUJ3 509 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 WWC3Q9ULE0 1092 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 TSPY2A6NKD2 308 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 B4DLN1 442 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 FERP16591 822 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 MRPL12P52815 198 aaKnown RBP8.34□□□□□ -1.07
UPF2-203ENST00000397053 TRAF1Q13077 416 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 NBPF6Q5VWK0 638 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 NBPF5PQ86XG9 351 aaPredicted RBP8.34□□□□□ -1.07
UPF2-203ENST00000397053 NBPF4Q96M43 638 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 TSNARE1Q96NA8 513 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 CRACR2AQ9BSW2 395 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 ZBTB3Q9H5J0 574 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 PHF8Q9UPP1 1060 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 EXOC6BQ9Y2D4 811 aa8.34□□□□□ -1.07
UPF2-203ENST00000397053 ZNF213O14771 459 aa8.34□□□□□ -1.08
UPF2-203ENST00000397053 PRC1O43663 620 aa8.34□□□□□ -1.08
UPF2-203ENST00000397053 UBE4AQ14139 1066 aa8.34□□□□□ -1.08
UPF2-203ENST00000397053 SPECC1Q5M775 1068 aa8.34□□□□□ -1.08
UPF2-203ENST00000397053 LDHAL6AQ6ZMR3 332 aa8.34□□□□□ -1.08
UPF2-203ENST00000397053 FERMT3Q86UX7 667 aa8.34□□□□□ -1.08
UPF2-203ENST00000397053 NUTM1Q86Y26 1132 aa8.34□□□□□ -1.08
UPF2-203ENST00000397053 JDP2Q8WYK2 163 aa8.34□□□□□ -1.08
UPF2-203ENST00000397053 TEX13AQ9BXU3 409 aaPredicted RBP8.34□□□□□ -1.08
UPF2-203ENST00000397053 FANCD2Q9BXW9 1451 aa8.34□□□□□ -1.08
UPF2-203ENST00000397053 SCAPERQ9BY12 1400 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 KIF5BP33176 963 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 PPP1R42Q7Z4L9 355 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 TCHPQ9BT92 498 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 PODXL2Q9NZ53 605 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 A0A087WZG4 1122 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 PDE4BQ07343 736 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 IFFO1Q0D2I5 559 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 C8orf76Q96K31 380 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 CCDC40Q4G0X9 1142 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 CCDC178Q5BJE1 867 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 CALML4Q96GE6 196 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 SYNCQ9H7C4 482 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 PAFAH1B1P43034 410 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 NCBP1Q09161 790 aaKnown RBP8.33□□□□□ -1.08
UPF2-203ENST00000397053 SMC1AQ14683 1233 aaKnown RBP8.33□□□□□ -1.08
UPF2-203ENST00000397053 STX8Q9UNK0 236 aa8.33□□□□□ -1.08
UPF2-203ENST00000397053 FCHSD2O94868 740 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 CASTP20810 708 aaKnown RBP8.32□□□□□ -1.08
UPF2-203ENST00000397053 DUSP27Q5VZP5 1158 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 ATAD2Q6PL18 1390 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 UBA7P41226 1012 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 LMAN1P49257 510 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 CCDC117Q8IWD4 279 aaPredicted RBP8.32□□□□□ -1.08
UPF2-203ENST00000397053 CDCA7LQ96GN5 454 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.32□□□□□ -1.08
UPF2-203ENST00000397053 TAOK3Q9H2K8 898 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 MIS18AQ9NYP9 233 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 FSD2A1L4K1 749 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 CEP63Q96MT8 703 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 GOPCQ9HD26 462 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.32□□□□□ -1.08
UPF2-203ENST00000397053 CCDC7Q96M83 1385 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 GOLGA8AA7E2F4 631 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 GOLGA8BA8MQT2 603 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 USO1O60763 962 aaKnown RBP8.32□□□□□ -1.08
UPF2-203ENST00000397053 AMPD3Q01432 767 aa8.32□□□□□ -1.08
UPF2-203ENST00000397053 PHACTR2O75167 634 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 MTIF2P46199 727 aaKnown RBP8.31□□□□□ -1.08
UPF2-203ENST00000397053 TAF7Q15545 349 aaPredicted RBP8.31□□□□□ -1.08
UPF2-203ENST00000397053 UBXN4Q92575 508 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 KAT14Q9H8E8 782 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 TMCO5BA8MYB1 307 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 TBCAO75347 108 aaKnown RBP8.31□□□□□ -1.08
UPF2-203ENST00000397053 USP37Q86T82 979 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 RAB3IL1Q8TBN0 382 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 SFPQP23246 707 aaKnown RBP eCLIP8.31□□□□□ -1.08
UPF2-203ENST00000397053 RBM26Q5T8P6 1007 aaKnown RBP8.31□□□□□ -1.08
UPF2-203ENST00000397053 USHBP1Q8N6Y0 703 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 DDX23Q9BUQ8 820 aaKnown RBP8.31□□□□□ -1.08
UPF2-203ENST00000397053 K7ELQ4 463 aaPredicted RBP8.31□□□□□ -1.08
UPF2-203ENST00000397053 CADPS2Q86UW7 1296 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 GBP3Q9H0R5 595 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 ARHGAP5Q13017 1502 aa8.31□□□□□ -1.08
UPF2-203ENST00000397053 BRD4O60885 1362 aaPredicted RBP8.31□□□□□ -1.08
UPF2-203ENST00000397053 GCOM1H8Y6P7 765 aaPredicted RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 MYZAPP0CAP1 466 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 PRPF4BQ13523 1007 aaKnown RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 NFE2L2Q16236 605 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 PRPF40BQ6NWY9 871 aaKnown RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 WDR63Q8IWG1 891 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 LMOD1P29536 600 aaPredicted RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 NBPF1Q3BBV0 1214 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms