RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 ESCO1Q5FWF5 840 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 NBPF6Q5VWK0 638 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 NBPF4Q96M43 638 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 CARD10Q9BWT7 1032 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 BCL11BQ9C0K0 894 aaPredicted RBP6.73□□□□□ -1.33
VPS41-203ENST00000395969 OSBPL3Q9H4L5 887 aa6.73□□□□□ -1.33
VPS41-203ENST00000395969 HSP90AA1P07900 732 aaKnown RBP6.72□□□□□ -1.33
VPS41-203ENST00000395969 CCT4P50991 539 aaKnown RBP6.72□□□□□ -1.33
VPS41-203ENST00000395969 FOXD4L5Q5VV16 416 aaPredicted RBP6.72□□□□□ -1.33
VPS41-203ENST00000395969 LRP10Q7Z4F1 713 aa6.72□□□□□ -1.33
VPS41-203ENST00000395969 RPAP2Q8IXW5 612 aaPredicted RBP6.72□□□□□ -1.33
VPS41-203ENST00000395969 FOXD4L4Q8WXT5 416 aaPredicted RBP6.72□□□□□ -1.33
VPS41-203ENST00000395969 KIAA1551Q9HCM1 1747 aa6.72□□□□□ -1.33
VPS41-203ENST00000395969 FSD2A1L4K1 749 aa6.72□□□□□ -1.33
VPS41-203ENST00000395969 EIF4A1P60842 406 aaKnown RBP6.72□□□□□ -1.33
VPS41-203ENST00000395969 C8orf58Q8NAV2 365 aa6.72□□□□□ -1.33
VPS41-203ENST00000395969 SBF2Q86WG5 1849 aa6.72□□□□□ -1.33
VPS41-203ENST00000395969 SALL3Q9BXA9 1300 aa6.72□□□□□ -1.33
VPS41-203ENST00000395969 RNMTO43148 476 aaKnown RBP6.71□□□□□ -1.33
VPS41-203ENST00000395969 SLAIN2Q9P270 581 aa6.71□□□□□ -1.33
VPS41-203ENST00000395969 NOB1Q9ULX3 412 aaKnown RBP6.71□□□□□ -1.33
VPS41-203ENST00000395969 THRAP3Q9Y2W1 955 aaKnown RBP6.71□□□□□ -1.33
VPS41-203ENST00000395969 TNNT2P45379 298 aaPredicted RBP6.71□□□□□ -1.34
VPS41-203ENST00000395969 PCDHB15Q9Y5E8 787 aa6.71□□□□□ -1.34
VPS41-203ENST00000395969 ERVV-2B6SEH9 535 aa6.71□□□□□ -1.34
VPS41-203ENST00000395969 RGS3P49796 1198 aa6.71□□□□□ -1.34
VPS41-203ENST00000395969 ANKRD24Q8TF21 1146 aa6.71□□□□□ -1.34
VPS41-203ENST00000395969 IGHDP01880 384 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 CCDC30Q5VVM6 783 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 ANKRD44Q8N8A2 993 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 TSR2Q969E8 191 aaKnown RBP6.7□□□□□ -1.34
VPS41-203ENST00000395969 CDCA7Q9BWT1 371 aaPredicted RBP6.7□□□□□ -1.34
VPS41-203ENST00000395969 DCTPP1Q9H773 170 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 SMC4Q9NTJ3 1288 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 MYH3P11055 1940 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 RAD21O60216 631 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 PLIN1O60240 522 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 ECM2O94769 699 aaPredicted RBP6.7□□□□□ -1.34
VPS41-203ENST00000395969 HMOX1P09601 288 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 XRCC6P12956 609 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS41-203ENST00000395969 TSPYL6Q8N831 410 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 DCAF5Q96JK2 942 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 RRP7AQ9Y3A4 280 aaKnown RBP6.7□□□□□ -1.34
VPS41-203ENST00000395969 TAF1LQ8IZX4 1826 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 JCADQ9P266 1359 aa6.7□□□□□ -1.34
VPS41-203ENST00000395969 PHKG2P15735 406 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 ANTXR1Q9H6X2 564 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 AK9Q5TCS8 1911 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 POLA2Q14181 598 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 TMEM57Q8N5G2 664 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 AXIN2Q9Y2T1 843 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 ALDH1L1O75891 902 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 KCTD17Q8N5Z5 321 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 SPG7Q9UQ90 795 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 PCDH11XQ9BZA7 1347 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 PCDH11YQ9BZA8 1340 aa6.69□□□□□ -1.34
VPS41-203ENST00000395969 RFX7Q2KHR2 1363 aa6.68□□□□□ -1.34
VPS41-203ENST00000395969 FBLN1P23142 703 aa6.68□□□□□ -1.34
VPS41-203ENST00000395969 BMP2KLQ5H9B9 411 aa6.68□□□□□ -1.34
VPS41-203ENST00000395969 ADCY9O60503 1353 aa6.68□□□□□ -1.34
VPS41-203ENST00000395969 RBM25P49756 843 aaKnown RBP6.68□□□□□ -1.34
VPS41-203ENST00000395969 MKRN4PQ13434 485 aaPredicted RBP6.68□□□□□ -1.34
VPS41-203ENST00000395969 RTF1Q92541 710 aaKnown RBP6.68□□□□□ -1.34
VPS41-203ENST00000395969 SLC52A2Q9HAB3 445 aa6.68□□□□□ -1.34
VPS41-203ENST00000395969 APBB1O00213 710 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 SIRT2Q8IXJ6 389 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 PANK1Q8TE04 598 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 STAP2Q9UGK3 403 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 HDAC5Q9UQL6 1122 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 GIGYF1O75420 1035 aaPredicted RBP6.67□□□□□ -1.34
VPS41-203ENST00000395969 FGD1P98174 961 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 BARGINQ6ZT62 677 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 SNRKQ9NRH2 765 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 MTMR7Q9Y216 660 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 ZNF335Q9H4Z2 1342 aaPredicted RBP6.67□□□□□ -1.34
VPS41-203ENST00000395969 GOLGA6L3A6NEY3 463 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 PDIA6Q15084 440 aa6.67□□□□□ -1.34
VPS41-203ENST00000395969 NUP98P52948 1817 aa6.66□□□□□ -1.34
VPS41-203ENST00000395969 DOCK2Q92608 1830 aa6.66□□□□□ -1.34
VPS41-203ENST00000395969 FOXO3O43524 673 aa6.66□□□□□ -1.34
VPS41-203ENST00000395969 HSP90B1P14625 803 aaKnown RBP6.66□□□□□ -1.34
VPS41-203ENST00000395969 IFNL2Q8IZJ0 200 aa6.66□□□□□ -1.34
VPS41-203ENST00000395969 PDCL3Q9H2J4 239 aa6.66□□□□□ -1.34
VPS41-203ENST00000395969 RIC1Q4ADV7 1423 aa6.66□□□□□ -1.34
VPS41-203ENST00000395969 FAM83GA6ND36 823 aa6.66□□□□□ -1.34
VPS41-203ENST00000395969 HYPKQ9NX55 129 aa6.66□□□□□ -1.34
VPS41-203ENST00000395969 COG6Q9Y2V7 657 aa6.66□□□□□ -1.34
VPS41-203ENST00000395969 TPM2P07951 284 aa6.65□□□□□ -1.34
VPS41-203ENST00000395969 GNAI3P08754 354 aa6.65□□□□□ -1.34
VPS41-203ENST00000395969 CEP85Q6P2H3 762 aa6.65□□□□□ -1.34
VPS41-203ENST00000395969 SSH3Q8TE77 659 aa6.65□□□□□ -1.34
VPS41-203ENST00000395969 LRRC59Q96AG4 307 aaKnown RBP6.65□□□□□ -1.34
VPS41-203ENST00000395969 PANK2Q9BZ23 570 aa6.65□□□□□ -1.34
VPS41-203ENST00000395969 TSPYL4Q9UJ04 414 aa6.65□□□□□ -1.34
VPS41-203ENST00000395969 PRDM4Q9UKN5 801 aa6.65□□□□□ -1.34
VPS41-203ENST00000395969 CAPN15O75808 1086 aa6.65□□□□□ -1.34
VPS41-203ENST00000395969 BECN1Q14457 450 aa6.65□□□□□ -1.34
VPS41-203ENST00000395969 GZF1Q9H116 711 aaPredicted RBP6.65□□□□□ -1.34
VPS41-203ENST00000395969 DDX21Q9NR30 783 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS41-203ENST00000395969 NRXN2Q9P2S2 1712 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms