RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 PRAMEF22A3QJZ6 481 aa11.87□□□□□ -0.51
ATG4A-205ENST00000394892 KCNA3P22001 575 aa11.87□□□□□ -0.51
ATG4A-205ENST00000394892 MCM10Q7L590 875 aa11.87□□□□□ -0.51
ATG4A-205ENST00000394892 VSIG10Q8N0Z9 540 aa11.87□□□□□ -0.51
ATG4A-205ENST00000394892 A0A0G2JLW4 131 aa11.86□□□□□ -0.51
ATG4A-205ENST00000394892 DDX10Q13206 875 aaKnown RBP11.86□□□□□ -0.51
ATG4A-205ENST00000394892 USPL1Q5W0Q7 1092 aa11.86□□□□□ -0.51
ATG4A-205ENST00000394892 NUDCQ9Y266 331 aa11.86□□□□□ -0.51
ATG4A-205ENST00000394892 HEG1Q9ULI3 1381 aa11.86□□□□□ -0.51
ATG4A-205ENST00000394892 ADCY9O60503 1353 aa11.85□□□□□ -0.51
ATG4A-205ENST00000394892 POLRMTO00411 1230 aaKnown RBP11.85□□□□□ -0.51
ATG4A-205ENST00000394892 A1BGP04217 495 aa11.85□□□□□ -0.51
ATG4A-205ENST00000394892 DPEP1P16444 411 aa11.85□□□□□ -0.51
ATG4A-205ENST00000394892 EIF5P55010 431 aaKnown RBP11.85□□□□□ -0.51
ATG4A-205ENST00000394892 TEFQ10587 303 aa11.85□□□□□ -0.51
ATG4A-205ENST00000394892 COL15A1P39059 1388 aa11.84□□□□□ -0.51
ATG4A-205ENST00000394892 KIAA1551Q9HCM1 1747 aa11.84□□□□□ -0.51
ATG4A-205ENST00000394892 CANXP27824 592 aaKnown RBP11.84□□□□□ -0.51
ATG4A-205ENST00000394892 NFIXQ14938 502 aa11.84□□□□□ -0.51
ATG4A-205ENST00000394892 NARFQ9UHQ1 456 aa11.84□□□□□ -0.51
ATG4A-205ENST00000394892 USP16Q9Y5T5 823 aa11.84□□□□□ -0.51
ATG4A-205ENST00000394892 C4AP0C0L4 1744 aa11.83□□□□□ -0.52
ATG4A-205ENST00000394892 BTBD11A6QL63 1104 aa11.83□□□□□ -0.52
ATG4A-205ENST00000394892 PIP4K2AP48426 406 aaPredicted RBP11.83□□□□□ -0.52
ATG4A-205ENST00000394892 APLP1P51693 650 aa11.83□□□□□ -0.52
ATG4A-205ENST00000394892 TGFB2P61812 414 aa11.83□□□□□ -0.52
ATG4A-205ENST00000394892 MIS18AQ9NYP9 233 aa11.83□□□□□ -0.52
ATG4A-205ENST00000394892 UBR2Q8IWV8 1755 aa11.82□□□□□ -0.52
ATG4A-205ENST00000394892 TTC5Q8N0Z6 440 aa11.82□□□□□ -0.52
ATG4A-205ENST00000394892 THUMPD2Q9BTF0 503 aaKnown RBP11.82□□□□□ -0.52
ATG4A-205ENST00000394892 PARP3Q9Y6F1 533 aa11.82□□□□□ -0.52
ATG4A-205ENST00000394892 NBPF26B4DH59 902 aa11.81□□□□□ -0.52
ATG4A-205ENST00000394892 HTATSF1O43719 755 aaKnown RBP11.81□□□□□ -0.52
ATG4A-205ENST00000394892 TOMM70O94826 608 aa11.81□□□□□ -0.52
ATG4A-205ENST00000394892 CHRNA5P30532 468 aa11.81□□□□□ -0.52
ATG4A-205ENST00000394892 NBPF10Q6P3W6 841 aaKnown RBP11.81□□□□□ -0.52
ATG4A-205ENST00000394892 ARHGAP27Q6ZUM4 889 aa11.81□□□□□ -0.52
ATG4A-205ENST00000394892 NBPF15Q8N660 670 aa11.81□□□□□ -0.52
ATG4A-205ENST00000394892 FMNL2Q96PY5 1086 aa11.81□□□□□ -0.52
ATG4A-205ENST00000394892 BCS1LQ9Y276 419 aa11.81□□□□□ -0.52
ATG4A-205ENST00000394892 SIPA1L3O60292 1781 aaPredicted RBP11.81□□□□□ -0.52
ATG4A-205ENST00000394892 KIF3CO14782 793 aa11.8□□□□□ -0.52
ATG4A-205ENST00000394892 ZPR1O75312 459 aa11.8□□□□□ -0.52
ATG4A-205ENST00000394892 STARD3NLO95772 234 aa11.8□□□□□ -0.52
ATG4A-205ENST00000394892 C16orf71Q8IYS4 520 aaPredicted RBP11.8□□□□□ -0.52
ATG4A-205ENST00000394892 TBC1D2BQ9UPU7 963 aa11.8□□□□□ -0.52
ATG4A-205ENST00000394892 CARMIL3Q8ND23 1372 aa11.79□□□□□ -0.52
ATG4A-205ENST00000394892 CAMTA2O94983 1202 aa11.79□□□□□ -0.52
ATG4A-205ENST00000394892 RALBP1Q15311 655 aa11.79□□□□□ -0.52
ATG4A-205ENST00000394892 NFE2L2Q16236 605 aa11.79□□□□□ -0.52
ATG4A-205ENST00000394892 TBC1D9BQ66K14 1250 aa11.79□□□□□ -0.52
ATG4A-205ENST00000394892 SERPINB2P05120 415 aa11.78□□□□□ -0.52
ATG4A-205ENST00000394892 IL6STP40189 918 aaPredicted RBP11.78□□□□□ -0.52
ATG4A-205ENST00000394892 TAF7Q15545 349 aaPredicted RBP11.78□□□□□ -0.52
ATG4A-205ENST00000394892 RTF1Q92541 710 aaKnown RBP11.78□□□□□ -0.52
ATG4A-205ENST00000394892 TEX13AQ9BXU3 409 aaPredicted RBP11.78□□□□□ -0.52
ATG4A-205ENST00000394892 KIF13BQ9NQT8 1826 aa11.78□□□□□ -0.52
ATG4A-205ENST00000394892 SNRPA1P09661 255 aaKnown RBP11.77□□□□□ -0.53
ATG4A-205ENST00000394892 BICDL1Q6ZP65 573 aa11.77□□□□□ -0.53
ATG4A-205ENST00000394892 CCDC24Q8N4L8 307 aa11.77□□□□□ -0.53
ATG4A-205ENST00000394892 PRELPP51888 382 aa11.76□□□□□ -0.53
ATG4A-205ENST00000394892 EIF4A1P60842 406 aaKnown RBP11.76□□□□□ -0.53
ATG4A-205ENST00000394892 ZNF330Q9Y3S2 320 aaPredicted RBP11.76□□□□□ -0.53
ATG4A-205ENST00000394892 MYBBP1AQ9BQG0 1328 aaKnown RBP11.76□□□□□ -0.53
ATG4A-205ENST00000394892 N4BP2Q86UW6 1770 aaPredicted RBP11.75□□□□□ -0.53
ATG4A-205ENST00000394892 VIRMAQ69YN4 1812 aaKnown RBP11.75□□□□□ -0.53
ATG4A-205ENST00000394892 A0A087WZG4 1122 aa11.75□□□□□ -0.53
ATG4A-205ENST00000394892 PRR5LQ6MZQ0 368 aa11.75□□□□□ -0.53
ATG4A-205ENST00000394892 PRKRIP1Q9H875 184 aaPredicted RBP11.75□□□□□ -0.53
ATG4A-205ENST00000394892 PIM2Q9P1W9 311 aa11.75□□□□□ -0.53
ATG4A-205ENST00000394892 KDM2BQ8NHM5 1336 aa11.75□□□□□ -0.53
ATG4A-205ENST00000394892 C9orf131Q5VYM1 1079 aa11.74□□□□□ -0.53
ATG4A-205ENST00000394892 DZIP3Q86Y13 1208 aaKnown RBP11.74□□□□□ -0.53
ATG4A-205ENST00000394892 CCDC146Q8IYE0 955 aa11.74□□□□□ -0.53
ATG4A-205ENST00000394892 RBM46Q8TBY0 533 aaKnown RBP11.74□□□□□ -0.53
ATG4A-205ENST00000394892 RRP7AQ9Y3A4 280 aaKnown RBP11.74□□□□□ -0.53
ATG4A-205ENST00000394892 NRXN2Q9P2S2 1712 aa11.74□□□□□ -0.53
ATG4A-205ENST00000394892 TMPOP42166 694 aaKnown RBP11.73□□□□□ -0.53
ATG4A-205ENST00000394892 HLFQ16534 295 aa11.73□□□□□ -0.53
ATG4A-205ENST00000394892 DALRD3Q5D0E6 543 aaKnown RBP11.73□□□□□ -0.53
ATG4A-205ENST00000394892 LRP10Q7Z4F1 713 aa11.73□□□□□ -0.53
ATG4A-205ENST00000394892 NMRK2Q9NPI5 230 aa11.73□□□□□ -0.53
ATG4A-205ENST00000394892 ADAMTS8Q9UP79 889 aa11.73□□□□□ -0.53
ATG4A-205ENST00000394892 TRIM35Q9UPQ4 493 aa11.73□□□□□ -0.53
ATG4A-205ENST00000394892 RIPK4P57078 832 aa11.72□□□□□ -0.53
ATG4A-205ENST00000394892 FSTL1Q12841 308 aa11.72□□□□□ -0.53
ATG4A-205ENST00000394892 CCDC184Q52MB2 194 aa11.72□□□□□ -0.53
ATG4A-205ENST00000394892 PDIA6Q15084 440 aa11.71□□□□□ -0.53
ATG4A-205ENST00000394892 TTLL7Q6ZT98 887 aa11.71□□□□□ -0.53
ATG4A-205ENST00000394892 C2CD5Q86YS7 1000 aa11.71□□□□□ -0.53
ATG4A-205ENST00000394892 DNAJC5GQ8N7S2 189 aa11.71□□□□□ -0.53
ATG4A-205ENST00000394892 RNF181Q9P0P0 153 aa11.71□□□□□ -0.53
ATG4A-205ENST00000394892 CEP350Q5VT06 3117 aa11.71□□□□□ -0.53
ATG4A-205ENST00000394892 MAPK8IP3Q9UPT6 1336 aa11.7□□□□□ -0.54
ATG4A-205ENST00000394892 RASSF7Q02833 373 aa11.7□□□□□ -0.54
ATG4A-205ENST00000394892 KRT24Q2M2I5 525 aa11.7□□□□□ -0.54
ATG4A-205ENST00000394892 PROSER3Q2NL68 480 aa11.7□□□□□ -0.54
ATG4A-205ENST00000394892 PNISRQ8TF01 805 aaKnown RBP11.7□□□□□ -0.54
ATG4A-205ENST00000394892 BRIP1Q9BX63 1249 aa11.7□□□□□ -0.54
ATG4A-205ENST00000394892 SCN7AQ01118 1682 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms