RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 USH1CQ9Y6N9 552 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 MCM4P33991 863 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 OPA1O60313 960 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 KIF5AQ12840 1032 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 PSMD1Q99460 953 aa13.4□□□□□ -0.26
VPS13A-205ENST00000376636 FAM184BQ9ULE4 1060 aa13.4□□□□□ -0.27
VPS13A-205ENST00000376636 ARL1P40616 181 aaPredicted RBP13.39□□□□□ -0.27
VPS13A-205ENST00000376636 STX1AQ16623 288 aa13.39□□□□□ -0.27
VPS13A-205ENST00000376636 CCDC121Q6ZUS5 278 aa13.39□□□□□ -0.27
VPS13A-205ENST00000376636 CEP120Q8N960 986 aa13.39□□□□□ -0.27
VPS13A-205ENST00000376636 FKBP4Q02790 459 aaKnown RBP eCLIP13.39□□□□□ -0.27
VPS13A-205ENST00000376636 JAKMIP1Q96N16 626 aaKnown RBP13.39□□□□□ -0.27
VPS13A-205ENST00000376636 DHX57Q6P158 1386 aaKnown RBP13.39□□□□□ -0.27
VPS13A-205ENST00000376636 SELENOOQ9BVL4 669 aa13.39□□□□□ -0.27
VPS13A-205ENST00000376636 SMARCA2P51531 1590 aa13.39□□□□□ -0.27
VPS13A-205ENST00000376636 ATF3P18847 181 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 DNA2P51530 1060 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 CCDC77Q9BR77 488 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 CCDC14Q49A88 953 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 KIAA1524Q8TCG1 905 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 FAM114A2Q9NRY5 505 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 ZBTB16Q05516 673 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 POLA1P09884 1462 aaPredicted RBP13.38□□□□□ -0.27
VPS13A-205ENST00000376636 NDC80O14777 642 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 A0A087WZG4 1122 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 WDHD1O75717 1129 aaPredicted RBP13.38□□□□□ -0.27
VPS13A-205ENST00000376636 USP5P45974 858 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 SH2B1Q9NRF2 756 aaPredicted RBP13.38□□□□□ -0.27
VPS13A-205ENST00000376636 TTC31Q49AM3 519 aaPredicted RBP13.38□□□□□ -0.27
VPS13A-205ENST00000376636 UBA5Q9GZZ9 404 aa13.38□□□□□ -0.27
VPS13A-205ENST00000376636 KANK3Q6NY19 840 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 TBC1D5Q92609 795 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 PDZRN3Q9UPQ7 1066 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 ALDH3A1P30838 453 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 CEP57Q86XR8 500 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 CUL5Q93034 780 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 GPRASP1Q5JY77 1395 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 VCX3BQ9H321 246 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 RGS22Q8NE09 1264 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 AIDAQ96BJ3 306 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 NOP2P46087 812 aaKnown RBP13.37□□□□□ -0.27
VPS13A-205ENST00000376636 USP37Q86T82 979 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 PPP1R9BQ96SB3 815 aa13.37□□□□□ -0.27
VPS13A-205ENST00000376636 A0A1B0GUA9 196 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 AACSQ86V21 672 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 NLRP2Q9NX02 1062 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 PLEKHO1Q53GL0 409 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-205ENST00000376636 CHD1LQ86WJ1 897 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 CCDC174Q6PII3 467 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 ZSCAN29Q8IWY8 852 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-205ENST00000376636 JAKMIP2Q96AA8 810 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 PAIP2Q9BPZ3 127 aaKnown RBP13.36□□□□□ -0.27
VPS13A-205ENST00000376636 CWC27Q6UX04 472 aaKnown RBP13.36□□□□□ -0.27
VPS13A-205ENST00000376636 GBP6Q6ZN66 633 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 STMN2Q93045 179 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 LUC7L2Q9Y383 392 aaKnown RBP13.36□□□□□ -0.27
VPS13A-205ENST00000376636 STMN1P16949 149 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 SARNPP82979 210 aaKnown RBP13.36□□□□□ -0.27
VPS13A-205ENST00000376636 CNNM3Q8NE01 707 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 ZHX1Q9UKY1 873 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-205ENST00000376636 SOGA1O94964 1423 aa13.36□□□□□ -0.27
VPS13A-205ENST00000376636 DZIP1Q86YF9 867 aaKnown RBP13.36□□□□□ -0.27
VPS13A-205ENST00000376636 GBP7Q8N8V2 638 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-205ENST00000376636 SNX16P57768 344 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 KANK4Q5T7N3 995 aaPredicted RBP13.35□□□□□ -0.27
VPS13A-205ENST00000376636 TRERF1Q96PN7 1200 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 EBAG9O00559 213 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 TWISTNBQ3B726 338 aaPredicted RBP13.35□□□□□ -0.27
VPS13A-205ENST00000376636 ATP2A2P16615 1042 aaKnown RBP13.35□□□□□ -0.27
VPS13A-205ENST00000376636 CTAGE1Q96RT6 745 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 PNISRQ8TF01 805 aaKnown RBP13.35□□□□□ -0.27
VPS13A-205ENST00000376636 FYCO1Q9BQS8 1478 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 ATP11AP98196 1134 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 CCDC12Q8WUD4 166 aaPredicted RBP13.35□□□□□ -0.27
VPS13A-205ENST00000376636 LRP2BPQ9P2M1 347 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 PIP4K2BP78356 416 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 SETDB1Q15047 1291 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 CALML4Q96GE6 196 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 TMOD2Q9NZR1 351 aa13.35□□□□□ -0.27
VPS13A-205ENST00000376636 C8orf76Q96K31 380 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 DDX19AQ9NUU7 478 aaKnown RBP13.34□□□□□ -0.27
VPS13A-205ENST00000376636 PRC1O43663 620 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 CASQ2O14958 399 aaPredicted RBP13.34□□□□□ -0.27
VPS13A-205ENST00000376636 TUBB4AP04350 444 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 LRRC27Q9C0I9 530 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 SYNCQ9H7C4 482 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 MTIF2P46199 727 aaKnown RBP13.34□□□□□ -0.27
VPS13A-205ENST00000376636 CCDC96Q2M329 555 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 SF3B2Q13435 895 aaKnown RBP13.34□□□□□ -0.27
VPS13A-205ENST00000376636 STRN4Q9NRL3 753 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 CTAGE9A4FU28 777 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 BACH2Q9BYV9 841 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 NOB1Q9ULX3 412 aaKnown RBP13.34□□□□□ -0.27
VPS13A-205ENST00000376636 SRRTQ9BXP5 876 aaKnown RBP13.34□□□□□ -0.27
VPS13A-205ENST00000376636 RSPH14Q9UHP6 348 aa13.34□□□□□ -0.27
VPS13A-205ENST00000376636 LACTBP83111 547 aaPredicted RBP13.33□□□□□ -0.27
VPS13A-205ENST00000376636 OTUD6BQ8N6M0 293 aa13.33□□□□□ -0.27
VPS13A-205ENST00000376636 IFT74Q96LB3 600 aa13.33□□□□□ -0.27
VPS13A-205ENST00000376636 BAG4O95429 457 aaKnown RBP13.33□□□□□ -0.27
VPS13A-205ENST00000376636 EPSTI1Q96J88 318 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 187.3 ms